Wall clock time and date at job start Tue Mar 31 2020 06:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46791 * 2 1 4 4 N 1.46498 * 109.47210 * 120.00069 * 2 1 3 5 5 C 1.38855 * 119.99831 * 275.00100 * 4 2 1 6 6 C 1.39570 * 119.84083 * 179.97438 * 5 4 2 7 7 C 1.36339 * 120.16012 * 180.25235 * 6 5 4 8 8 C 1.40887 * 119.83668 * 359.50290 * 7 6 5 9 9 C 1.41138 * 120.15717 * 180.24827 * 8 7 6 10 10 H 1.07993 * 120.00433 * 205.18075 * 9 8 7 11 11 C 1.39868 * 119.99920 * 25.18694 * 9 8 7 12 12 N 1.30909 * 120.00088 * 18.00238 * 11 9 8 13 13 Si 1.86801 * 120.00195 * 198.00244 * 11 9 8 14 14 H 1.48498 * 109.46643 * 94.51143 * 13 11 9 15 15 H 1.48493 * 109.47078 * 214.50948 * 13 11 9 16 16 H 1.48496 * 109.46808 * 334.51363 * 13 11 9 17 17 C 1.40885 * 119.68810 * 0.47632 * 8 7 6 18 18 C 1.36342 * 119.83864 * 359.77131 * 17 8 7 19 19 C 1.52996 * 109.46990 * 240.00144 * 2 1 3 20 20 C 1.52584 * 109.22840 * 180.59876 * 19 2 1 21 21 C 1.53114 * 109.94785 * 168.95841 * 20 19 2 22 22 S 1.81749 * 108.80548 * 63.08960 * 21 20 19 23 23 C 1.81751 * 102.22147 * 306.70966 * 22 21 20 24 24 C 1.52583 * 109.22857 * 59.40142 * 19 2 1 25 25 H 1.09004 * 109.47283 * 300.00139 * 1 2 3 26 26 H 1.09002 * 109.47151 * 59.99945 * 1 2 3 27 27 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 28 28 H 0.97002 * 120.00019 * 94.99442 * 4 2 1 29 29 H 1.08000 * 119.91833 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.08500 * 179.74364 * 7 6 5 31 31 H 0.96998 * 120.00024 * 179.97438 * 12 11 9 32 32 H 1.08006 * 120.08173 * 179.75905 * 17 8 7 33 33 H 1.07997 * 119.92133 * 179.97438 * 18 17 8 34 34 H 1.09001 * 109.22530 * 300.00077 * 19 2 1 35 35 H 1.09006 * 109.38798 * 289.15458 * 20 19 2 36 36 H 1.09005 * 109.38767 * 48.85047 * 20 19 2 37 37 H 1.08996 * 109.61091 * 303.28062 * 21 20 19 38 38 H 1.09003 * 109.57395 * 182.86769 * 21 20 19 39 39 H 1.09002 * 109.57359 * 293.46278 * 23 22 21 40 40 H 1.08997 * 109.57819 * 173.07646 * 23 22 21 41 41 H 1.08998 * 109.38722 * 311.14548 * 24 19 2 42 42 H 1.08997 * 109.38776 * 70.94796 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1510 0.0021 2.3922 6 6 2.6160 -0.6592 3.5299 7 6 2.7438 0.0133 4.7090 8 6 2.4151 1.3818 4.7746 9 6 2.5499 2.0858 5.9903 10 1 1.9517 2.9661 6.1738 11 6 3.4582 1.6436 6.9576 12 7 4.4184 0.8183 6.6251 13 14 3.3011 2.2305 8.7241 14 1 2.5153 1.2423 9.5059 15 1 4.6535 2.3712 9.3210 16 1 2.6096 3.5444 8.7494 17 6 1.9467 2.0429 3.6220 18 6 1.8190 1.3565 2.4509 19 6 2.0400 -0.7212 -1.2492 20 6 3.5657 -0.7310 -1.2362 21 6 4.0913 -1.6757 -2.3205 22 16 3.5772 -1.0456 -3.9459 23 6 1.7817 -0.8580 -3.7355 24 6 1.5161 -0.0063 -2.4913 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2490 -1.6318 1.1526 29 1 2.8710 -1.7074 3.4772 30 1 3.0999 -0.5006 5.5896 31 1 5.0485 0.5119 7.2959 32 1 1.6891 3.0909 3.6661 33 1 1.4597 1.8618 1.5667 34 1 1.6744 -1.7481 -1.2452 35 1 3.9357 0.2772 -1.4230 36 1 3.9171 -1.0690 -0.2612 37 1 3.6788 -2.6730 -2.1682 38 1 5.1795 -1.7172 -2.2725 39 1 1.3241 -1.8394 -3.6108 40 1 1.3607 -0.3654 -4.6119 41 1 0.4437 0.1591 -2.3882 42 1 2.0218 0.9534 -2.5967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192725970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:10 Heat of formation + Delta-G solvation = 4.284245 kcal Electronic energy + Delta-G solvation = -20812.950395 eV Core-core repulsion = 17882.733084 eV Total energy + Delta-G solvation = -2930.217311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.00544 -37.39290 -34.72743 -32.99592 -31.85913 -30.61667 -29.29990 -28.09718 -26.84464 -24.47544 -23.07363 -22.15843 -21.15541 -20.22101 -19.64782 -17.22887 -17.08958 -16.08172 -15.70242 -14.97745 -14.77453 -14.35824 -14.04065 -13.90077 -13.81884 -13.15171 -13.04653 -12.97984 -12.62477 -12.45051 -12.31224 -12.00567 -11.71868 -11.60525 -11.45836 -11.26704 -11.06589 -10.92185 -10.84716 -10.53533 -10.43452 -10.38796 -9.78918 -9.64744 -9.30284 -9.22311 -8.55505 -7.85616 -7.49529 -6.64797 -6.39079 -4.03696 1.61296 2.36349 2.90840 3.09513 3.15170 3.18819 3.35216 4.05227 4.13493 4.43426 4.57043 4.72905 4.76636 4.83485 5.04192 5.08129 5.20589 5.33577 5.47375 5.51281 5.57417 5.67292 5.78428 5.82393 5.88142 5.89723 6.02760 6.15079 6.24435 6.28170 6.33157 6.49798 6.86478 7.05616 7.19963 7.31587 7.59435 7.66054 7.79547 8.14949 8.33552 8.49058 8.67265 8.79926 9.05946 9.14970 10.37228 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035521 B = 0.003055 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.087552 B = 9163.703107 C = 9554.777583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.167 3.833 3 H 0.073 0.927 4 N -0.754 5.754 5 C 0.095 3.905 6 C -0.164 4.164 7 C -0.123 4.123 8 C 0.075 3.925 9 C -0.468 4.468 10 H 0.072 0.928 11 C 0.075 3.925 12 N -0.808 5.808 13 Si 0.902 3.098 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.264 1.264 17 C -0.189 4.189 18 C -0.160 4.160 19 C -0.099 4.099 20 C -0.117 4.117 21 C -0.076 4.076 22 S -0.281 6.281 23 C -0.076 4.076 24 C -0.119 4.119 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.382 0.618 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.276 0.724 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 -4.867 -15.655 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.060 3.940 3 H 0.091 0.909 4 N -0.389 5.389 5 C -0.002 4.002 6 C -0.186 4.186 7 C -0.143 4.143 8 C 0.073 3.927 9 C -0.499 4.499 10 H 0.090 0.910 11 C -0.140 4.140 12 N -0.435 5.435 13 Si 0.728 3.272 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.188 1.188 17 C -0.209 4.209 18 C -0.182 4.182 19 C -0.118 4.118 20 C -0.156 4.156 21 C -0.224 4.224 22 S -0.056 6.056 23 C -0.225 4.225 24 C -0.158 4.158 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.215 0.785 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.941 -4.610 -16.541 17.422 hybrid contribution -0.578 -0.436 1.846 1.983 sum -3.518 -5.046 -14.695 15.931 Atomic orbital electron populations 1.22393 0.97159 1.01633 1.01695 1.20512 0.92676 0.96694 0.84118 0.90914 1.43925 1.77100 1.10936 1.06942 1.17308 1.05332 0.91863 0.85705 1.20028 1.07427 0.97804 0.93300 1.20896 1.02704 0.94379 0.96272 1.17486 0.91621 0.91551 0.92091 1.19381 1.19685 1.11223 0.99637 0.90960 1.25791 0.93679 0.94067 1.00483 1.69859 1.10979 1.27674 1.35014 0.86400 0.78188 0.80011 0.82632 1.19630 1.20565 1.18820 1.20569 1.09739 0.97787 0.92815 1.19885 1.08085 0.92795 0.97388 1.21373 0.95472 1.00109 0.94874 1.21763 0.94990 1.00074 0.98737 1.23481 1.04264 1.01307 0.93344 1.86845 1.09317 1.87382 1.22020 1.23428 0.93673 1.03392 1.01978 1.21851 1.02478 0.99167 0.92351 0.91874 0.92634 0.93071 0.78495 0.89672 0.86525 0.91357 0.89208 0.89393 0.91209 0.90622 0.89628 0.90078 0.87919 0.90054 0.87967 0.89997 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.06 37.16 0.34 -1.78 16 2 C 0.17 2.20 1.83 -67.93 -0.12 2.08 16 3 H 0.07 1.08 6.45 -51.93 -0.33 0.75 16 4 N -0.75 -12.09 4.32 -52.04 -0.22 -12.31 16 5 C 0.09 1.97 6.65 -83.69 -0.56 1.42 16 6 C -0.16 -3.74 9.82 -39.77 -0.39 -4.13 16 7 C -0.12 -3.18 8.63 -39.26 -0.34 -3.52 16 8 C 0.08 2.02 5.57 -106.79 -0.59 1.43 16 9 C -0.47 -12.71 9.03 -37.87 -0.34 -13.05 16 10 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 11 C 0.07 1.93 5.12 -17.34 -0.09 1.84 16 12 N -0.81 -21.43 11.00 55.54 0.61 -20.82 16 13 Si 0.90 19.26 29.60 -169.99 -5.03 14.23 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 16 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 17 C -0.19 -4.64 9.74 -39.26 -0.38 -5.02 16 18 C -0.16 -3.49 8.74 -39.77 -0.35 -3.84 16 19 C -0.10 -1.04 1.58 -91.05 -0.14 -1.18 16 20 C -0.12 -1.29 5.01 -26.88 -0.13 -1.43 16 21 C -0.08 -0.75 6.46 37.22 0.24 -0.51 16 22 S -0.28 -2.98 22.33 -107.50 -2.40 -5.38 16 23 C -0.08 -0.65 6.46 37.21 0.24 -0.41 16 24 C -0.12 -1.08 4.94 -26.89 -0.13 -1.21 16 25 H 0.06 0.93 7.67 -51.93 -0.40 0.53 16 26 H 0.05 0.57 6.17 -51.93 -0.32 0.25 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.38 5.61 8.38 -40.82 -0.34 5.27 16 29 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.12 3.15 6.21 -52.48 -0.33 2.83 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 32 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 33 H 0.09 1.72 6.04 -52.49 -0.32 1.40 16 34 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.08 0.91 8.05 -51.93 -0.42 0.50 16 36 H 0.09 1.06 7.08 -51.93 -0.37 0.70 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.67 5.84 -51.93 -0.30 0.37 16 42 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -27.56 338.26 -11.18 -38.74 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.47 Total: 9.75 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.76 Total: -29.30 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.39 Total: -33.13 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.40 Total: -5.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.56 -11.18 -38.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192725970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.025 kcal (2) G-P(sol) polarization free energy of solvation -27.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds