Wall clock time and date at job start Tue Mar 31 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46791 * 2 1 4 4 N 1.46498 * 109.47210 * 120.00069 * 2 1 3 5 5 C 1.38855 * 119.99831 * 275.00100 * 4 2 1 6 6 C 1.39570 * 119.84083 * 179.97438 * 5 4 2 7 7 C 1.36339 * 120.16012 * 180.25235 * 6 5 4 8 8 C 1.40887 * 119.83668 * 359.50290 * 7 6 5 9 9 C 1.41138 * 120.15717 * 180.24827 * 8 7 6 10 10 H 1.07993 * 120.00433 * 205.18075 * 9 8 7 11 11 C 1.39868 * 119.99920 * 25.18694 * 9 8 7 12 12 N 1.30909 * 120.00088 * 18.00238 * 11 9 8 13 13 Si 1.86801 * 120.00195 * 198.00244 * 11 9 8 14 14 H 1.48498 * 109.46643 * 94.51143 * 13 11 9 15 15 H 1.48493 * 109.47078 * 214.50948 * 13 11 9 16 16 H 1.48496 * 109.46808 * 334.51363 * 13 11 9 17 17 C 1.40885 * 119.68810 * 0.47632 * 8 7 6 18 18 C 1.36342 * 119.83864 * 359.77131 * 17 8 7 19 19 C 1.52996 * 109.46990 * 240.00144 * 2 1 3 20 20 C 1.52584 * 109.22840 * 180.59876 * 19 2 1 21 21 C 1.53114 * 109.94785 * 168.95841 * 20 19 2 22 22 S 1.81749 * 108.80548 * 63.08960 * 21 20 19 23 23 C 1.81751 * 102.22147 * 306.70966 * 22 21 20 24 24 C 1.52583 * 109.22857 * 59.40142 * 19 2 1 25 25 H 1.09004 * 109.47283 * 300.00139 * 1 2 3 26 26 H 1.09002 * 109.47151 * 59.99945 * 1 2 3 27 27 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 28 28 H 0.97002 * 120.00019 * 94.99442 * 4 2 1 29 29 H 1.08000 * 119.91833 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.08500 * 179.74364 * 7 6 5 31 31 H 0.96998 * 120.00024 * 179.97438 * 12 11 9 32 32 H 1.08006 * 120.08173 * 179.75905 * 17 8 7 33 33 H 1.07997 * 119.92133 * 179.97438 * 18 17 8 34 34 H 1.09001 * 109.22530 * 300.00077 * 19 2 1 35 35 H 1.09006 * 109.38798 * 289.15458 * 20 19 2 36 36 H 1.09005 * 109.38767 * 48.85047 * 20 19 2 37 37 H 1.08996 * 109.61091 * 303.28062 * 21 20 19 38 38 H 1.09003 * 109.57395 * 182.86769 * 21 20 19 39 39 H 1.09002 * 109.57359 * 293.46278 * 23 22 21 40 40 H 1.08997 * 109.57819 * 173.07646 * 23 22 21 41 41 H 1.08998 * 109.38722 * 311.14548 * 24 19 2 42 42 H 1.08997 * 109.38776 * 70.94796 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1510 0.0021 2.3922 6 6 2.6160 -0.6592 3.5299 7 6 2.7438 0.0133 4.7090 8 6 2.4151 1.3818 4.7746 9 6 2.5499 2.0858 5.9903 10 1 1.9517 2.9661 6.1738 11 6 3.4582 1.6436 6.9576 12 7 4.4184 0.8183 6.6251 13 14 3.3011 2.2305 8.7241 14 1 2.5153 1.2423 9.5059 15 1 4.6535 2.3712 9.3210 16 1 2.6096 3.5444 8.7494 17 6 1.9467 2.0429 3.6220 18 6 1.8190 1.3565 2.4509 19 6 2.0400 -0.7212 -1.2492 20 6 3.5657 -0.7310 -1.2362 21 6 4.0913 -1.6757 -2.3205 22 16 3.5772 -1.0456 -3.9459 23 6 1.7817 -0.8580 -3.7355 24 6 1.5161 -0.0063 -2.4913 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2490 -1.6318 1.1526 29 1 2.8710 -1.7074 3.4772 30 1 3.0999 -0.5006 5.5896 31 1 5.0485 0.5119 7.2959 32 1 1.6891 3.0909 3.6661 33 1 1.4597 1.8618 1.5667 34 1 1.6744 -1.7481 -1.2452 35 1 3.9357 0.2772 -1.4230 36 1 3.9171 -1.0690 -0.2612 37 1 3.6788 -2.6730 -2.1682 38 1 5.1795 -1.7172 -2.2725 39 1 1.3241 -1.8394 -3.6108 40 1 1.3607 -0.3654 -4.6119 41 1 0.4437 0.1591 -2.3882 42 1 2.0218 0.9534 -2.5967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192725970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:09 Heat of formation + Delta-G solvation = -8.305769 kcal Electronic energy + Delta-G solvation = -20813.496339 eV Core-core repulsion = 17882.733084 eV Total energy + Delta-G solvation = -2930.763255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.29305 -38.89043 -36.22983 -34.64771 -32.73116 -32.02296 -31.07578 -29.75267 -27.74580 -26.21069 -24.01911 -23.44108 -22.65121 -21.76661 -20.88311 -19.09728 -18.08892 -17.47053 -17.17905 -16.56158 -15.77364 -15.54371 -15.33287 -15.08399 -14.76694 -14.52498 -14.37013 -14.03688 -13.89882 -13.78980 -13.64076 -13.53618 -13.21862 -12.98140 -12.74825 -12.61907 -12.50849 -12.29330 -12.18477 -11.85437 -11.58094 -11.51870 -11.28327 -11.10158 -11.00810 -10.57691 -10.26832 -9.38041 -8.67217 -8.54505 -8.12644 -5.99363 0.86155 1.11471 1.20504 1.39811 1.52530 1.59424 1.62377 2.27503 2.84296 2.88456 3.53212 3.75020 3.86064 3.91902 4.05627 4.25849 4.28083 4.28533 4.47002 4.51032 4.53230 4.58340 4.70746 4.74142 4.80895 4.91625 4.99613 5.00865 5.04812 5.08452 5.20208 5.23837 5.32115 5.37249 5.45766 5.49706 5.76053 5.81015 5.94934 6.20056 6.43142 6.70023 6.91387 7.09807 7.16743 7.33980 8.48981 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035521 B = 0.003055 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.087552 B = 9163.703107 C = 9554.777583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.164 3.836 3 H 0.059 0.941 4 N -0.743 5.743 5 C 0.122 3.878 6 C -0.176 4.176 7 C -0.141 4.141 8 C 0.035 3.965 9 C -0.508 4.508 10 H 0.065 0.935 11 C 0.032 3.968 12 N -0.842 5.842 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.271 1.271 16 H -0.262 1.262 17 C -0.198 4.198 18 C -0.166 4.166 19 C -0.088 4.088 20 C -0.114 4.114 21 C -0.066 4.066 22 S -0.319 6.319 23 C -0.065 4.065 24 C -0.115 4.115 25 H 0.037 0.963 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.393 0.607 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.281 0.719 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.816 -5.648 -17.452 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.077 0.923 4 N -0.377 5.377 5 C 0.023 3.977 6 C -0.198 4.198 7 C -0.161 4.161 8 C 0.032 3.968 9 C -0.539 4.539 10 H 0.083 0.917 11 C -0.179 4.179 12 N -0.471 5.471 13 Si 0.797 3.203 14 H -0.190 1.190 15 H -0.196 1.196 16 H -0.185 1.185 17 C -0.218 4.218 18 C -0.188 4.188 19 C -0.107 4.107 20 C -0.153 4.153 21 C -0.214 4.214 22 S -0.094 6.094 23 C -0.213 4.213 24 C -0.154 4.154 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.227 0.773 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.041 -5.411 -18.393 19.594 hybrid contribution -0.281 -0.248 2.160 2.192 sum -4.322 -5.659 -16.233 17.726 Atomic orbital electron populations 1.22331 0.95877 1.02272 1.01879 1.20699 0.93506 0.96049 0.83939 0.92331 1.43998 1.76053 1.11409 1.06230 1.17365 1.01987 0.91600 0.86760 1.20225 1.07693 0.98881 0.93038 1.20826 1.03954 0.94405 0.96903 1.17786 0.93615 0.92327 0.93051 1.19588 1.21052 1.12035 1.01237 0.91651 1.26584 0.92807 0.94143 1.04412 1.69920 1.11695 1.28984 1.36455 0.85302 0.78450 0.79475 0.77073 1.18985 1.19558 1.18549 1.20763 1.09560 0.98194 0.93314 1.20114 1.07941 0.93347 0.97389 1.21275 0.94818 1.00549 0.94032 1.21695 0.95576 0.99592 0.98398 1.23414 1.04454 1.01345 0.92233 1.87033 1.11974 1.87619 1.22741 1.23474 0.91524 1.04116 1.02218 1.21814 1.03238 0.98666 0.91677 0.94369 0.89847 0.92195 0.77263 0.87581 0.88529 0.90826 0.88989 0.86809 0.89964 0.91995 0.91071 0.88908 0.87824 0.88803 0.86499 0.88317 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 9.06 71.98 0.65 -2.90 16 2 C 0.16 3.87 1.83 44.99 0.08 3.96 16 3 H 0.06 1.60 6.45 -2.39 -0.02 1.59 16 4 N -0.74 -22.13 4.32 -318.54 -1.38 -23.50 16 5 C 0.12 4.97 6.65 38.67 0.26 5.23 16 6 C -0.18 -8.04 9.82 22.15 0.22 -7.83 16 7 C -0.14 -7.55 8.63 22.48 0.19 -7.36 16 8 C 0.04 1.95 5.57 -21.27 -0.12 1.84 16 9 C -0.51 -28.79 9.03 23.38 0.21 -28.58 16 10 H 0.07 3.62 7.91 -2.91 -0.02 3.60 16 11 C 0.03 1.71 5.12 85.22 0.44 2.15 16 12 N -0.84 -46.26 11.00 21.82 0.24 -46.02 16 13 Si 0.98 40.48 29.60 68.60 2.03 42.51 16 14 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 15 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 17 C -0.20 -9.95 9.74 22.48 0.22 -9.73 16 18 C -0.17 -7.16 8.74 22.15 0.19 -6.96 16 19 C -0.09 -1.55 1.58 -11.07 -0.02 -1.57 16 20 C -0.11 -2.29 5.01 30.49 0.15 -2.14 16 21 C -0.07 -1.17 6.46 72.02 0.47 -0.71 16 22 S -0.32 -6.09 22.33 -56.49 -1.26 -7.36 16 23 C -0.07 -0.89 6.46 72.02 0.46 -0.42 16 24 C -0.11 -1.67 4.94 30.49 0.15 -1.51 16 25 H 0.04 1.02 7.67 -2.38 -0.02 1.01 16 26 H 0.08 1.34 6.17 -2.39 -0.01 1.33 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.39 10.43 8.38 -92.71 -0.78 9.66 16 29 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.10 5.48 6.21 -2.91 -0.02 5.46 16 31 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16 32 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.11 4.27 6.04 -2.91 -0.02 4.25 16 34 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 35 H 0.06 1.42 8.05 -2.38 -0.02 1.40 16 36 H 0.07 1.65 7.08 -2.38 -0.02 1.63 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.15 5.84 -2.39 -0.01 1.13 16 42 H 0.07 1.17 8.05 -2.39 -0.02 1.15 16 Total: -1.00 -61.93 338.26 3.43 -58.50 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.23 Total: 32.39 kcal Atomic # 6 Polarization: -60.09 SS G_CDS: 3.56 Total: -56.53 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -1.14 Total: -69.52 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 16 Polarization: -6.09 SS G_CDS: -1.26 Total: -7.36 kcal Total: -61.93 3.43 -58.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192725970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.197 kcal (2) G-P(sol) polarization free energy of solvation -61.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds