Wall clock time and date at job start Tue Mar 31 2020 08:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48496 * 109.47259 * 239.99765 * 3 2 1 5 5 H 1.48500 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47224 * 119.99881 * 3 2 1 7 7 C 1.38658 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99888 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99800 * 185.05112 * 9 7 2 11 11 C 1.38882 * 120.06955 * 354.46327 * 10 9 7 12 12 C 1.38093 * 119.92916 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06905 * 0.02562 * 12 11 10 14 14 C 1.50709 * 119.92650 * 179.97438 * 13 12 11 15 15 N 1.46892 * 109.47148 * 90.00564 * 14 13 12 16 16 C 1.46898 * 111.00218 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47553 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47180 * 179.97438 * 17 16 15 19 19 H 1.08995 * 110.80247 * 305.69693 * 18 17 16 20 20 C 1.54816 * 110.90594 * 182.07006 * 18 17 16 21 21 C 1.54094 * 104.18666 * 220.92265 * 20 18 17 22 22 O 1.43741 * 107.29798 * 357.96727 * 21 20 18 23 23 C 1.44425 * 106.99718 * 26.48930 * 22 21 20 24 24 C 1.38302 * 120.13964 * 0.23761 * 13 12 11 25 25 C 1.38097 * 120.06839 * 359.48537 * 24 13 12 26 26 H 0.97003 * 119.99901 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03398 * 359.95675 * 11 10 9 28 28 H 1.08000 * 119.96482 * 180.02562 * 12 11 10 29 29 H 1.08998 * 109.46882 * 329.99870 * 14 13 12 30 30 H 1.09004 * 109.46398 * 210.00433 * 14 13 12 31 31 H 1.00908 * 110.99790 * 303.95199 * 15 14 13 32 32 H 1.08996 * 109.47188 * 59.99838 * 16 15 14 33 33 H 1.09002 * 109.46988 * 300.00031 * 16 15 14 34 34 H 1.08996 * 109.47116 * 59.99658 * 17 16 15 35 35 H 1.09002 * 109.46888 * 299.99957 * 17 16 15 36 36 H 1.08999 * 110.48602 * 339.59653 * 20 18 17 37 37 H 1.09001 * 110.48876 * 102.24285 * 20 18 17 38 38 H 1.09004 * 109.88152 * 117.39348 * 21 20 18 39 39 H 1.09008 * 109.87996 * 238.39287 * 21 20 18 40 40 H 1.09000 * 110.65308 * 201.48164 * 23 22 21 41 41 H 1.09005 * 110.59745 * 78.47395 * 23 22 21 42 42 H 1.07994 * 119.96452 * 179.72263 * 24 13 12 43 43 H 1.07994 * 120.03784 * 180.25704 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2124 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3346 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 3.4571 -3.4395 0.0950 12 6 4.2022 -4.5970 0.2046 13 6 3.5683 -5.8202 0.3263 14 6 4.3846 -7.0815 0.4451 15 7 4.6559 -7.3575 1.8621 16 6 5.4510 -8.5830 2.0170 17 6 5.7122 -8.8372 3.5029 18 6 6.5397 -10.1139 3.6642 19 1 6.0591 -10.9528 3.1609 20 6 6.7799 -10.4313 5.1603 21 6 8.2473 -10.8983 5.2164 22 8 8.7506 -10.8888 3.8701 23 6 7.9834 -9.9074 3.1394 24 6 2.1870 -5.8889 0.3337 25 6 1.4363 -4.7344 0.2302 26 1 -0.4850 0.8401 0.0004 27 1 3.9526 -2.4847 -0.0007 28 1 5.2810 -4.5470 0.1953 29 1 5.3272 -6.9558 -0.0877 30 1 3.8309 -7.9147 0.0122 31 1 5.1117 -6.5723 2.3026 32 1 6.4010 -8.4681 1.4952 33 1 4.9044 -9.4264 1.5951 34 1 4.7620 -8.9522 4.0244 35 1 6.2586 -7.9938 3.9252 36 1 6.6408 -9.5366 5.7672 37 1 6.1133 -11.2268 5.4933 38 1 8.8302 -10.2156 5.8348 39 1 8.2999 -11.9067 5.6270 40 1 8.0335 -10.1002 2.0678 41 1 8.3338 -8.9004 3.3660 42 1 1.6950 -6.8460 0.4243 43 1 0.3578 -4.7882 0.2402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220702002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:34 Heat of formation + Delta-G solvation = -61.014266 kcal Electronic energy + Delta-G solvation = -21840.982813 eV Core-core repulsion = 18465.181075 eV Total energy + Delta-G solvation = -3375.801738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83386 -39.07274 -37.24528 -35.96320 -33.71008 -32.29119 -30.81911 -30.16022 -29.45342 -27.32406 -25.50416 -24.16615 -23.22424 -22.01704 -21.85759 -20.82071 -20.27742 -17.98153 -17.05423 -16.89455 -16.17526 -16.02093 -15.40729 -14.96033 -14.63343 -14.50115 -14.45680 -13.94572 -13.72789 -13.56827 -13.43245 -12.89206 -12.86038 -12.68628 -12.37280 -12.03350 -11.87124 -11.67196 -11.54831 -11.33610 -11.13546 -11.06431 -10.82620 -10.74803 -10.65589 -10.50544 -10.42626 -10.03033 -9.33921 -8.83920 -8.39150 -8.16571 -7.18403 -6.45307 -4.04268 2.22965 2.28467 3.12420 3.13365 3.16371 3.56254 3.96136 4.10003 4.20282 4.39640 4.56060 4.69385 4.72302 4.88362 5.00562 5.09443 5.10229 5.19754 5.28875 5.33190 5.36587 5.40321 5.41504 5.44365 5.47030 5.58608 5.69401 5.73073 5.82039 5.90908 5.94174 5.97981 6.21814 6.43160 6.49775 6.71151 6.90017 7.01335 7.08296 7.26631 7.34593 7.43330 7.47655 7.83487 7.99570 9.00132 9.70561 10.72618 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029514 B = 0.002231 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.461427 B =12548.337500 C =12966.379205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.066 4.066 13 C -0.186 4.186 14 C 0.118 3.882 15 N -0.686 5.686 16 C 0.056 3.944 17 C -0.108 4.108 18 C -0.120 4.120 19 H 0.087 0.913 20 C -0.153 4.153 21 C 0.046 3.954 22 O -0.382 6.382 23 C 0.049 3.951 24 C -0.052 4.052 25 C -0.194 4.194 26 H 0.270 0.730 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.341 0.659 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.111 0.889 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.349 -17.805 6.984 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.085 4.085 13 C -0.187 4.187 14 C -0.010 4.010 15 N -0.318 5.318 16 C -0.073 4.073 17 C -0.145 4.145 18 C -0.139 4.139 19 H 0.105 0.895 20 C -0.191 4.191 21 C -0.031 4.031 22 O -0.301 6.301 23 C -0.027 4.027 24 C -0.071 4.071 25 C -0.214 4.214 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.120 0.880 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.129 0.871 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.479 -18.031 6.975 23.011 hybrid contribution 1.192 1.329 -0.167 1.793 sum 13.672 -16.703 6.807 22.633 Atomic orbital electron populations 1.70028 1.05949 1.27774 1.45976 1.25290 0.95848 0.98831 0.96566 0.85784 0.78699 0.79799 0.79157 1.19533 1.20270 1.19512 1.21270 0.91746 0.80859 1.52989 0.89158 1.83981 1.34348 1.11458 1.78301 1.19410 0.90290 0.88066 0.92067 1.21112 0.93829 0.98791 1.11674 1.20583 0.97989 0.91964 0.97931 1.19116 0.93712 0.93435 1.12433 1.20611 0.96987 0.95688 0.87672 1.60554 1.50289 1.05649 1.15275 1.21990 0.95476 0.94050 0.95775 1.21540 1.00343 0.95904 0.96757 1.22733 0.96339 0.99157 0.95660 0.89505 1.23006 0.96794 1.02375 0.96882 1.23152 0.93455 1.01650 0.84854 1.88870 1.59194 1.60047 1.21983 1.23702 0.89350 0.92478 0.97189 1.20463 0.92841 0.96667 0.97108 1.20229 0.99591 0.90354 1.11207 0.91965 0.85656 0.87971 0.95500 0.91185 0.84064 0.95594 0.91131 0.90422 0.91740 0.90335 0.90387 0.92478 0.89987 0.88986 0.92053 0.87069 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 9 O -0.18 -5.09 9.76 0.04 0.00 -5.09 16 10 C 0.16 3.77 6.65 -39.10 -0.26 3.51 16 11 C -0.23 -5.07 9.17 -39.40 -0.36 -5.43 16 12 C -0.07 -1.18 9.69 -39.61 -0.38 -1.57 16 13 C -0.19 -3.12 5.40 -104.57 -0.56 -3.68 16 14 C 0.12 1.56 5.81 -4.98 -0.03 1.53 16 15 N -0.69 -8.24 6.49 -115.06 -0.75 -8.98 16 16 C 0.06 0.52 5.56 -3.83 -0.02 0.50 16 17 C -0.11 -0.86 4.87 -26.73 -0.13 -0.99 16 18 C -0.12 -0.87 3.12 -88.61 -0.28 -1.14 16 19 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 20 C -0.15 -1.00 6.60 -25.20 -0.17 -1.16 16 21 C 0.05 0.33 7.70 37.73 0.29 0.62 16 22 O -0.38 -3.80 11.52 -35.23 -0.41 -4.21 16 23 C 0.05 0.40 6.49 38.21 0.25 0.64 16 24 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 25 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 28 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.34 4.10 8.72 -39.29 -0.34 3.76 16 32 H 0.03 0.23 7.59 -51.93 -0.39 -0.17 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 36 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 41 H 0.06 0.47 7.98 -51.93 -0.41 0.06 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -30.73 354.68 -9.05 -39.79 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.75 Total: 4.96 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -2.24 Total: -22.72 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.01 Total: -33.53 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.41 Total: -9.29 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.73 -9.05 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220702002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.229 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds