Wall clock time and date at job start Tue Mar 31 2020 08:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48496 * 109.47259 * 239.99765 * 3 2 1 5 5 H 1.48500 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47224 * 119.99881 * 3 2 1 7 7 C 1.38658 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99888 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99800 * 185.05112 * 9 7 2 11 11 C 1.38882 * 120.06955 * 354.46327 * 10 9 7 12 12 C 1.38093 * 119.92916 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06905 * 0.02562 * 12 11 10 14 14 C 1.50709 * 119.92650 * 179.97438 * 13 12 11 15 15 N 1.46892 * 109.47148 * 90.00564 * 14 13 12 16 16 C 1.46898 * 111.00218 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47553 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47180 * 179.97438 * 17 16 15 19 19 H 1.08995 * 110.80247 * 305.69693 * 18 17 16 20 20 C 1.54816 * 110.90594 * 182.07006 * 18 17 16 21 21 C 1.54094 * 104.18666 * 220.92265 * 20 18 17 22 22 O 1.43741 * 107.29798 * 357.96727 * 21 20 18 23 23 C 1.44425 * 106.99718 * 26.48930 * 22 21 20 24 24 C 1.38302 * 120.13964 * 0.23761 * 13 12 11 25 25 C 1.38097 * 120.06839 * 359.48537 * 24 13 12 26 26 H 0.97003 * 119.99901 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03398 * 359.95675 * 11 10 9 28 28 H 1.08000 * 119.96482 * 180.02562 * 12 11 10 29 29 H 1.08998 * 109.46882 * 329.99870 * 14 13 12 30 30 H 1.09004 * 109.46398 * 210.00433 * 14 13 12 31 31 H 1.00908 * 110.99790 * 303.95199 * 15 14 13 32 32 H 1.08996 * 109.47188 * 59.99838 * 16 15 14 33 33 H 1.09002 * 109.46988 * 300.00031 * 16 15 14 34 34 H 1.08996 * 109.47116 * 59.99658 * 17 16 15 35 35 H 1.09002 * 109.46888 * 299.99957 * 17 16 15 36 36 H 1.08999 * 110.48602 * 339.59653 * 20 18 17 37 37 H 1.09001 * 110.48876 * 102.24285 * 20 18 17 38 38 H 1.09004 * 109.88152 * 117.39348 * 21 20 18 39 39 H 1.09008 * 109.87996 * 238.39287 * 21 20 18 40 40 H 1.09000 * 110.65308 * 201.48164 * 23 22 21 41 41 H 1.09005 * 110.59745 * 78.47395 * 23 22 21 42 42 H 1.07994 * 119.96452 * 179.72263 * 24 13 12 43 43 H 1.07994 * 120.03784 * 180.25704 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2124 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3346 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 3.4571 -3.4395 0.0950 12 6 4.2022 -4.5970 0.2046 13 6 3.5683 -5.8202 0.3263 14 6 4.3846 -7.0815 0.4451 15 7 4.6559 -7.3575 1.8621 16 6 5.4510 -8.5830 2.0170 17 6 5.7122 -8.8372 3.5029 18 6 6.5397 -10.1139 3.6642 19 1 6.0591 -10.9528 3.1609 20 6 6.7799 -10.4313 5.1603 21 6 8.2473 -10.8983 5.2164 22 8 8.7506 -10.8888 3.8701 23 6 7.9834 -9.9074 3.1394 24 6 2.1870 -5.8889 0.3337 25 6 1.4363 -4.7344 0.2302 26 1 -0.4850 0.8401 0.0004 27 1 3.9526 -2.4847 -0.0007 28 1 5.2810 -4.5470 0.1953 29 1 5.3272 -6.9558 -0.0877 30 1 3.8309 -7.9147 0.0122 31 1 5.1117 -6.5723 2.3026 32 1 6.4010 -8.4681 1.4952 33 1 4.9044 -9.4264 1.5951 34 1 4.7620 -8.9522 4.0244 35 1 6.2586 -7.9938 3.9252 36 1 6.6408 -9.5366 5.7672 37 1 6.1133 -11.2268 5.4933 38 1 8.8302 -10.2156 5.8348 39 1 8.2999 -11.9067 5.6270 40 1 8.0335 -10.1002 2.0678 41 1 8.3338 -8.9004 3.3660 42 1 1.6950 -6.8460 0.4243 43 1 0.3578 -4.7882 0.2402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220702002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:34 Heat of formation + Delta-G solvation = -81.097392 kcal Electronic energy + Delta-G solvation = -21841.853682 eV Core-core repulsion = 18465.181075 eV Total energy + Delta-G solvation = -3376.672607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.78705 -40.42094 -38.70831 -37.08630 -34.65086 -34.15278 -31.84135 -31.69141 -30.43811 -28.29502 -27.33583 -25.31754 -23.97916 -23.59296 -22.58155 -22.00111 -21.22317 -19.83146 -18.84767 -17.50726 -16.99821 -16.81529 -16.41777 -16.33344 -16.15895 -15.72097 -15.59684 -15.30558 -15.19411 -14.89625 -14.36932 -14.20590 -13.98916 -13.74683 -13.53730 -13.45047 -12.96228 -12.84997 -12.56594 -12.38875 -12.35338 -12.25827 -12.14699 -12.02462 -11.64307 -11.58973 -11.38604 -11.16381 -10.78084 -10.64127 -9.76372 -9.31034 -8.88809 -8.46408 -6.14691 0.61991 0.69171 1.35001 1.45797 1.51445 2.18284 2.78694 2.98626 3.13374 3.48269 3.54045 3.62133 3.82775 4.00230 4.06396 4.08081 4.17942 4.23262 4.30963 4.40410 4.44048 4.54601 4.60296 4.63461 4.75758 4.78862 4.81146 4.83810 4.86935 4.90193 5.04717 5.10959 5.12064 5.16096 5.29593 5.32932 5.37694 5.59078 5.72659 5.82952 5.92417 6.03570 6.13580 6.27016 6.50488 6.98068 7.79581 8.76646 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029514 B = 0.002231 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.461427 B =12548.337500 C =12966.379205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.414 4.414 8 H 0.102 0.898 9 O -0.234 6.234 10 C 0.112 3.888 11 C -0.243 4.243 12 C -0.062 4.062 13 C -0.158 4.158 14 C 0.122 3.878 15 N -0.697 5.697 16 C 0.059 3.941 17 C -0.099 4.099 18 C -0.114 4.114 19 H 0.088 0.912 20 C -0.151 4.151 21 C 0.040 3.960 22 O -0.408 6.408 23 C 0.046 3.954 24 C -0.048 4.048 25 C -0.207 4.207 26 H 0.272 0.728 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.342 0.658 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.143 0.857 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.933 -19.676 7.459 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.490 4.490 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.263 4.263 12 C -0.081 4.081 13 C -0.159 4.159 14 C -0.006 4.006 15 N -0.328 5.328 16 C -0.070 4.070 17 C -0.137 4.137 18 C -0.133 4.133 19 H 0.106 0.894 20 C -0.188 4.188 21 C -0.037 4.037 22 O -0.327 6.327 23 C -0.030 4.030 24 C -0.067 4.067 25 C -0.226 4.226 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.160 0.840 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.161 0.839 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.099 -19.968 7.457 26.121 hybrid contribution 0.529 1.518 -0.271 1.630 sum 15.629 -18.450 7.186 25.225 Atomic orbital electron populations 1.70181 1.08031 1.28837 1.48875 1.26611 0.96879 1.02795 0.95917 0.84643 0.77377 0.74238 0.79920 1.18140 1.19666 1.18157 1.21777 0.92496 0.81463 1.53256 0.88117 1.83944 1.35997 1.12617 1.81471 1.19963 0.91713 0.87920 0.94190 1.21231 0.93015 1.00067 1.11944 1.20951 0.99671 0.90990 0.96461 1.19649 0.93635 0.94803 1.07835 1.20604 0.97258 0.93797 0.88943 1.60495 1.51491 1.06629 1.14191 1.22023 0.95552 0.92734 0.96650 1.21441 1.00107 0.96249 0.95904 1.22663 0.95728 0.98790 0.96132 0.89374 1.23008 0.96441 1.02883 0.96488 1.23305 0.93930 1.02482 0.83969 1.88842 1.60041 1.60644 1.23222 1.23792 0.89562 0.92263 0.97417 1.20848 0.93528 0.96651 0.95626 1.20475 0.99908 0.90705 1.11553 0.91862 0.86422 0.84371 0.93746 0.89842 0.84039 0.94558 0.90785 0.91046 0.91631 0.89906 0.89517 0.92014 0.89092 0.88508 0.91880 0.83880 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.96 13.67 21.61 0.30 -56.67 16 2 C -0.02 -1.41 5.49 84.84 0.47 -0.95 16 3 Si 1.02 42.93 29.55 68.60 2.03 44.96 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.41 -24.27 9.49 67.92 0.64 -23.62 16 8 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 9 O -0.23 -14.23 9.76 -22.77 -0.22 -14.46 16 10 C 0.11 5.66 6.65 22.58 0.15 5.81 16 11 C -0.24 -10.54 9.17 22.39 0.21 -10.33 16 12 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 13 C -0.16 -4.78 5.40 -19.83 -0.11 -4.88 16 14 C 0.12 2.65 5.81 85.56 0.50 3.15 16 15 N -0.70 -13.89 6.49 -517.94 -3.36 -17.25 16 16 C 0.06 0.87 5.56 86.30 0.48 1.35 16 17 C -0.10 -1.28 4.87 30.59 0.15 -1.13 16 18 C -0.11 -1.35 3.12 -9.49 -0.03 -1.38 16 19 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 20 C -0.15 -1.61 6.60 31.58 0.21 -1.40 16 21 C 0.04 0.50 7.70 72.35 0.56 1.06 16 22 O -0.41 -7.43 11.52 -148.98 -1.72 -9.14 16 23 C 0.05 0.63 6.49 72.66 0.47 1.10 16 24 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 25 C -0.21 -8.95 9.99 22.39 0.22 -8.72 16 26 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.12 5.18 5.64 -2.91 -0.02 5.16 16 28 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.04 0.86 8.08 -2.39 -0.02 0.84 16 30 H 0.08 1.67 8.08 -2.38 -0.02 1.65 16 31 H 0.34 6.88 8.72 -89.69 -0.78 6.10 16 32 H 0.04 0.48 7.59 -2.39 -0.02 0.46 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 0.85 8.05 -2.39 -0.02 0.83 16 36 H 0.08 0.82 7.86 -2.39 -0.02 0.80 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.10 1.19 8.11 -2.39 -0.02 1.17 16 41 H 0.06 0.83 7.98 -2.38 -0.02 0.81 16 42 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 43 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -70.97 354.68 1.59 -69.38 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.22 Total: 26.39 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 4.35 Total: -43.22 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -3.07 Total: -73.92 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -1.94 Total: -23.60 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -70.97 1.59 -69.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220702002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.717 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds