Wall clock time and date at job start Tue Mar 31 2020 08:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 119.99685 * 2 1 4 4 H 1.48501 * 109.47420 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47031 * 30.00412 * 3 2 1 6 6 H 1.48507 * 109.46944 * 150.00623 * 3 2 1 7 7 C 1.38651 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00195 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.35750 * 116.99897 * 185.05588 * 9 7 2 11 11 C 1.38878 * 120.06948 * 354.46707 * 10 9 7 12 12 C 1.38103 * 119.92999 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06797 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.92913 * 180.02562 * 13 12 11 15 15 N 1.46900 * 109.47285 * 89.99676 * 14 13 12 16 16 C 1.46897 * 110.99947 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47123 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47271 * 179.97438 * 17 16 15 19 19 H 1.08999 * 110.45833 * 52.39238 * 18 17 16 20 20 C 1.54502 * 110.51217 * 175.00307 * 18 17 16 21 21 C 1.54484 * 104.06498 * 118.64652 * 20 18 17 22 22 O 1.44426 * 104.79986 * 23.97707 * 21 20 18 23 23 C 1.44418 * 105.27718 * 319.49026 * 22 21 20 24 24 C 1.38300 * 120.13798 * 0.27374 * 13 12 11 25 25 C 1.38095 * 120.06785 * 359.48898 * 24 13 12 26 26 H 0.96996 * 120.00368 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.03869 * 359.95155 * 11 10 9 28 28 H 1.07997 * 119.96197 * 179.97438 * 12 11 10 29 29 H 1.09004 * 109.46960 * 329.99525 * 14 13 12 30 30 H 1.09003 * 109.46884 * 209.99518 * 14 13 12 31 31 H 1.00908 * 110.99618 * 303.95442 * 15 14 13 32 32 H 1.09003 * 109.47011 * 59.99838 * 16 15 14 33 33 H 1.09004 * 109.46840 * 299.99747 * 16 15 14 34 34 H 1.09003 * 109.47108 * 60.00144 * 17 16 15 35 35 H 1.08991 * 109.47294 * 300.00050 * 17 16 15 36 36 H 1.09003 * 110.50974 * 237.28709 * 20 18 17 37 37 H 1.09003 * 110.51412 * 359.97438 * 20 18 17 38 38 H 1.09004 * 110.37320 * 142.80969 * 21 20 18 39 39 H 1.08999 * 110.36951 * 265.14714 * 21 20 18 40 40 H 1.09002 * 110.37298 * 281.68100 * 23 22 21 41 41 H 1.09001 * 110.37328 * 159.34692 * 23 22 21 42 42 H 1.08000 * 119.96429 * 179.73018 * 24 13 12 43 43 H 1.08005 * 120.03787 * 180.25563 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5472 1.4402 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4573 -3.4394 0.0921 12 6 4.2026 -4.5970 0.2007 13 6 3.5689 -5.8201 0.3233 14 6 4.3853 -7.0813 0.4422 15 7 4.6577 -7.3566 1.8592 16 6 5.4539 -8.5813 2.0140 17 6 5.7172 -8.8340 3.4998 18 6 6.5459 -10.1100 3.6611 19 1 7.4379 -10.0665 3.0361 20 6 6.9322 -10.3211 5.1421 21 6 6.2721 -11.6673 5.5140 22 8 6.1184 -12.3625 4.2574 23 6 5.6981 -11.3537 3.3134 24 6 2.1877 -5.8888 0.3319 25 6 1.4368 -4.7344 0.2285 26 1 -0.4850 0.8400 0.0004 27 1 3.9528 -2.4845 -0.0036 28 1 5.2814 -4.5469 0.1899 29 1 5.3276 -6.9558 -0.0913 30 1 3.8313 -7.9147 0.0101 31 1 5.1137 -6.5711 2.2990 32 1 6.4035 -8.4658 1.4915 33 1 4.9077 -9.4253 1.5927 34 1 4.7677 -8.9494 4.0226 35 1 6.2635 -7.9900 3.9207 36 1 8.0151 -10.3843 5.2490 37 1 6.5332 -9.5162 5.7594 38 1 6.9179 -12.2341 6.1848 39 1 5.2993 -11.4982 5.9756 40 1 4.6372 -11.1364 3.4374 41 1 5.9029 -11.6795 2.2935 42 1 1.6957 -6.8459 0.4234 43 1 0.3582 -4.7882 0.2394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220702073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:39 Heat of formation + Delta-G solvation = -60.833011 kcal Electronic energy + Delta-G solvation = -21857.932081 eV Core-core repulsion = 18482.138204 eV Total energy + Delta-G solvation = -3375.793878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.83730 -39.07415 -37.24120 -35.95277 -33.69841 -32.29101 -30.75984 -30.15915 -29.42187 -27.28933 -25.49816 -24.13233 -23.35026 -22.05305 -21.88932 -20.70253 -20.26423 -17.98568 -17.10410 -16.80631 -16.07953 -16.01912 -15.42941 -14.97793 -14.67553 -14.55972 -14.31811 -13.99477 -13.75222 -13.55075 -13.40158 -13.01522 -12.69110 -12.63635 -12.22569 -12.12095 -11.81317 -11.77951 -11.54872 -11.32314 -11.14590 -11.01008 -10.81687 -10.74030 -10.62867 -10.49885 -10.42011 -10.10887 -9.33675 -8.84536 -8.39680 -8.16701 -7.18550 -6.45609 -4.04543 2.22787 2.28271 3.11662 3.12653 3.17517 3.63812 3.95789 4.08148 4.23710 4.42477 4.58494 4.69562 4.82443 4.90732 4.95927 5.05754 5.09745 5.23053 5.28773 5.34581 5.37027 5.40156 5.42819 5.50566 5.51856 5.59441 5.64521 5.74299 5.81460 5.88673 5.91129 6.01814 6.21695 6.42982 6.45920 6.71003 6.89835 7.01259 7.08285 7.26599 7.34443 7.43180 7.47496 7.83314 7.99403 8.99962 9.70426 10.72414 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.002203 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.347744 B =12705.516528 C =12992.568928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.066 4.066 13 C -0.186 4.186 14 C 0.118 3.882 15 N -0.686 5.686 16 C 0.056 3.944 17 C -0.109 4.109 18 C -0.121 4.121 19 H 0.082 0.918 20 C -0.152 4.152 21 C 0.044 3.956 22 O -0.380 6.380 23 C 0.048 3.952 24 C -0.052 4.052 25 C -0.194 4.194 26 H 0.270 0.730 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.341 0.659 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.128 -17.822 6.969 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.085 4.085 13 C -0.187 4.187 14 C -0.010 4.010 15 N -0.317 5.317 16 C -0.073 4.073 17 C -0.147 4.147 18 C -0.140 4.140 19 H 0.100 0.900 20 C -0.190 4.190 21 C -0.033 4.033 22 O -0.298 6.298 23 C -0.029 4.029 24 C -0.071 4.071 25 C -0.214 4.214 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.120 0.880 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.129 0.871 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.122 -18.150 7.001 22.921 hybrid contribution 1.379 1.471 -0.266 2.034 sum 13.502 -16.679 6.735 22.491 Atomic orbital electron populations 1.70036 1.05947 1.27667 1.46074 1.25292 0.95850 0.98838 0.96583 0.85714 0.78907 0.80112 0.78695 1.19894 1.20239 1.19230 1.21318 0.91774 0.80845 1.52871 0.89105 1.83981 1.34353 1.11464 1.78319 1.19406 0.90283 0.88067 0.92062 1.21116 0.93832 0.98788 1.11672 1.20584 0.97985 0.91966 0.97941 1.19114 0.93713 0.93434 1.12421 1.20613 0.96978 0.95696 0.87684 1.60578 1.50196 1.05667 1.15299 1.21995 0.95474 0.94034 0.95830 1.21638 1.00195 0.96181 0.96701 1.22541 0.99259 0.95587 0.96603 0.89972 1.23017 1.01618 0.98214 0.96145 1.23417 1.00011 0.92494 0.87391 1.89115 1.88904 1.32270 1.19550 1.23575 0.98193 0.87162 0.93974 1.20464 0.92836 0.96672 0.97103 1.20231 0.99597 0.90354 1.11187 0.92015 0.85654 0.87980 0.95516 0.91180 0.84064 0.95615 0.91165 0.90644 0.91592 0.90744 0.90145 0.89274 0.92189 0.91715 0.89187 0.87062 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.30 13.67 55.48 0.76 -24.55 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 9 O -0.18 -5.09 9.76 0.04 0.00 -5.09 16 10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 11 C -0.23 -5.08 9.17 -39.39 -0.36 -5.44 16 12 C -0.07 -1.19 9.69 -39.61 -0.38 -1.57 16 13 C -0.19 -3.12 5.40 -104.57 -0.56 -3.68 16 14 C 0.12 1.56 5.81 -4.97 -0.03 1.54 16 15 N -0.69 -8.26 6.49 -115.05 -0.75 -9.01 16 16 C 0.06 0.52 5.56 -3.83 -0.02 0.50 16 17 C -0.11 -0.88 4.69 -26.73 -0.13 -1.00 16 18 C -0.12 -0.88 3.11 -89.05 -0.28 -1.16 16 19 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 20 C -0.15 -1.01 6.74 -25.16 -0.17 -1.18 16 21 C 0.04 0.32 7.63 37.94 0.29 0.61 16 22 O -0.38 -3.80 11.65 -35.23 -0.41 -4.22 16 23 C 0.05 0.39 6.51 37.93 0.25 0.64 16 24 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 25 C -0.19 -4.14 9.99 -39.40 -0.39 -4.53 16 26 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 27 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 28 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.34 4.12 8.72 -39.29 -0.34 3.78 16 32 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.64 7.63 -51.93 -0.40 0.25 16 34 H 0.07 0.67 7.96 -51.93 -0.41 0.25 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.49 7.73 -51.93 -0.40 0.09 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.53 7.74 -51.93 -0.40 0.12 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -30.77 354.35 -9.04 -39.81 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.73 Total: 5.05 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.24 Total: -22.78 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.01 Total: -33.56 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.41 Total: -9.31 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.77 -9.04 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220702073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.022 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds