Wall clock time and date at job start Tue Mar 31 2020 08:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 119.99685 * 2 1 4 4 H 1.48501 * 109.47420 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47031 * 30.00412 * 3 2 1 6 6 H 1.48507 * 109.46944 * 150.00623 * 3 2 1 7 7 C 1.38651 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00195 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.35750 * 116.99897 * 185.05588 * 9 7 2 11 11 C 1.38878 * 120.06948 * 354.46707 * 10 9 7 12 12 C 1.38103 * 119.92999 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06797 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.92913 * 180.02562 * 13 12 11 15 15 N 1.46900 * 109.47285 * 89.99676 * 14 13 12 16 16 C 1.46897 * 110.99947 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47123 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47271 * 179.97438 * 17 16 15 19 19 H 1.08999 * 110.45833 * 52.39238 * 18 17 16 20 20 C 1.54502 * 110.51217 * 175.00307 * 18 17 16 21 21 C 1.54484 * 104.06498 * 118.64652 * 20 18 17 22 22 O 1.44426 * 104.79986 * 23.97707 * 21 20 18 23 23 C 1.44418 * 105.27718 * 319.49026 * 22 21 20 24 24 C 1.38300 * 120.13798 * 0.27374 * 13 12 11 25 25 C 1.38095 * 120.06785 * 359.48898 * 24 13 12 26 26 H 0.96996 * 120.00368 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.03869 * 359.95155 * 11 10 9 28 28 H 1.07997 * 119.96197 * 179.97438 * 12 11 10 29 29 H 1.09004 * 109.46960 * 329.99525 * 14 13 12 30 30 H 1.09003 * 109.46884 * 209.99518 * 14 13 12 31 31 H 1.00908 * 110.99618 * 303.95442 * 15 14 13 32 32 H 1.09003 * 109.47011 * 59.99838 * 16 15 14 33 33 H 1.09004 * 109.46840 * 299.99747 * 16 15 14 34 34 H 1.09003 * 109.47108 * 60.00144 * 17 16 15 35 35 H 1.08991 * 109.47294 * 300.00050 * 17 16 15 36 36 H 1.09003 * 110.50974 * 237.28709 * 20 18 17 37 37 H 1.09003 * 110.51412 * 359.97438 * 20 18 17 38 38 H 1.09004 * 110.37320 * 142.80969 * 21 20 18 39 39 H 1.08999 * 110.36951 * 265.14714 * 21 20 18 40 40 H 1.09002 * 110.37298 * 281.68100 * 23 22 21 41 41 H 1.09001 * 110.37328 * 159.34692 * 23 22 21 42 42 H 1.08000 * 119.96429 * 179.73018 * 24 13 12 43 43 H 1.08005 * 120.03787 * 180.25563 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5472 1.4402 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4573 -3.4394 0.0921 12 6 4.2026 -4.5970 0.2007 13 6 3.5689 -5.8201 0.3233 14 6 4.3853 -7.0813 0.4422 15 7 4.6577 -7.3566 1.8592 16 6 5.4539 -8.5813 2.0140 17 6 5.7172 -8.8340 3.4998 18 6 6.5459 -10.1100 3.6611 19 1 7.4379 -10.0665 3.0361 20 6 6.9322 -10.3211 5.1421 21 6 6.2721 -11.6673 5.5140 22 8 6.1184 -12.3625 4.2574 23 6 5.6981 -11.3537 3.3134 24 6 2.1877 -5.8888 0.3319 25 6 1.4368 -4.7344 0.2285 26 1 -0.4850 0.8400 0.0004 27 1 3.9528 -2.4845 -0.0036 28 1 5.2814 -4.5469 0.1899 29 1 5.3276 -6.9558 -0.0913 30 1 3.8313 -7.9147 0.0101 31 1 5.1137 -6.5711 2.2990 32 1 6.4035 -8.4658 1.4915 33 1 4.9077 -9.4253 1.5927 34 1 4.7677 -8.9494 4.0226 35 1 6.2635 -7.9900 3.9207 36 1 8.0151 -10.3843 5.2490 37 1 6.5332 -9.5162 5.7594 38 1 6.9179 -12.2341 6.1848 39 1 5.2993 -11.4982 5.9756 40 1 4.6372 -11.1364 3.4374 41 1 5.9029 -11.6795 2.2935 42 1 1.6957 -6.8459 0.4234 43 1 0.3582 -4.7882 0.2394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220702073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:37 Heat of formation + Delta-G solvation = -80.980273 kcal Electronic energy + Delta-G solvation = -21858.805732 eV Core-core repulsion = 18482.138204 eV Total energy + Delta-G solvation = -3376.667529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79035 -40.43216 -38.70918 -37.07799 -34.64582 -34.15177 -31.82990 -31.67143 -30.38961 -28.27416 -27.33096 -25.27975 -24.09384 -23.59709 -22.67235 -21.98569 -21.11151 -19.83598 -18.85666 -17.53547 -16.91713 -16.69597 -16.43018 -16.35735 -16.19375 -15.77684 -15.57535 -15.34440 -15.19491 -14.81915 -14.45471 -14.26193 -13.97313 -13.72958 -13.55089 -13.20778 -12.98128 -12.88496 -12.56549 -12.42030 -12.32541 -12.23474 -12.15408 -12.08078 -11.61089 -11.56845 -11.32788 -11.16287 -10.79052 -10.74046 -9.76605 -9.31892 -8.89053 -8.46717 -6.14986 0.61724 0.68871 1.34946 1.44330 1.52663 2.17939 2.78821 3.04693 3.13436 3.45763 3.53750 3.65076 3.85867 4.02583 4.06704 4.08867 4.20797 4.23783 4.31283 4.35908 4.45000 4.51424 4.61813 4.64068 4.76959 4.78184 4.82637 4.86441 4.89256 4.92867 5.06162 5.07651 5.10730 5.16031 5.25287 5.32478 5.39704 5.58873 5.72456 5.82646 5.87545 6.03507 6.13246 6.26719 6.50223 6.97894 7.79422 8.76597 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.002203 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.347744 B =12705.516528 C =12992.568928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.102 0.898 9 O -0.234 6.234 10 C 0.113 3.887 11 C -0.243 4.243 12 C -0.062 4.062 13 C -0.158 4.158 14 C 0.122 3.878 15 N -0.697 5.697 16 C 0.059 3.941 17 C -0.101 4.101 18 C -0.115 4.115 19 H 0.087 0.913 20 C -0.150 4.150 21 C 0.037 3.963 22 O -0.405 6.405 23 C 0.044 3.956 24 C -0.048 4.048 25 C -0.207 4.207 26 H 0.272 0.728 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.342 0.658 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.143 0.857 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.093 -19.486 7.392 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.262 4.262 12 C -0.081 4.081 13 C -0.159 4.159 14 C -0.006 4.006 15 N -0.328 5.328 16 C -0.070 4.070 17 C -0.139 4.139 18 C -0.134 4.134 19 H 0.106 0.894 20 C -0.188 4.188 21 C -0.039 4.039 22 O -0.325 6.325 23 C -0.033 4.033 24 C -0.067 4.067 25 C -0.226 4.226 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.160 0.840 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.161 0.839 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.124 -19.878 7.430 26.059 hybrid contribution 0.578 1.592 -0.353 1.730 sum 15.702 -18.286 7.077 25.120 Atomic orbital electron populations 1.70186 1.08037 1.28777 1.48958 1.26614 0.96881 1.02804 0.95935 0.84576 0.77792 0.74514 0.79245 1.18796 1.19623 1.17624 1.21818 0.92503 0.81446 1.53137 0.88095 1.83944 1.36004 1.12623 1.81479 1.19956 0.91707 0.87914 0.94183 1.21233 0.93013 1.00059 1.11942 1.20952 0.99672 0.90980 0.96459 1.19645 0.93627 0.94806 1.07835 1.20606 0.97253 0.93806 0.88945 1.60518 1.51405 1.06646 1.14228 1.22028 0.95537 0.92738 0.96688 1.21545 0.99908 0.96610 0.95843 1.22483 0.99083 0.94707 0.97139 0.89449 1.23020 1.02061 0.97926 0.95763 1.23582 1.00583 0.92957 0.86797 1.89088 1.89078 1.33570 1.20732 1.23661 0.98204 0.87293 0.94097 1.20846 0.93533 0.96647 0.95634 1.20474 0.99906 0.90709 1.11544 0.91864 0.86427 0.84360 0.93746 0.89851 0.84028 0.94605 0.90794 0.91537 0.91263 0.90013 0.89530 0.88183 0.91947 0.91982 0.88568 0.83906 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.98 13.67 21.61 0.30 -56.69 16 2 C -0.03 -1.43 5.49 84.83 0.47 -0.97 16 3 Si 1.02 42.94 29.55 68.60 2.03 44.96 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.41 -24.21 9.49 67.92 0.64 -23.56 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 9 O -0.23 -14.24 9.76 -22.77 -0.22 -14.47 16 10 C 0.11 5.67 6.65 22.58 0.15 5.82 16 11 C -0.24 -10.53 9.17 22.39 0.21 -10.33 16 12 C -0.06 -2.07 9.69 22.25 0.22 -1.86 16 13 C -0.16 -4.78 5.40 -19.83 -0.11 -4.89 16 14 C 0.12 2.66 5.81 85.56 0.50 3.15 16 15 N -0.70 -13.95 6.49 -517.92 -3.36 -17.31 16 16 C 0.06 0.87 5.56 86.30 0.48 1.35 16 17 C -0.10 -1.32 4.69 30.59 0.14 -1.18 16 18 C -0.11 -1.37 3.11 -9.78 -0.03 -1.40 16 19 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 20 C -0.15 -1.63 6.74 31.61 0.21 -1.42 16 21 C 0.04 0.48 7.63 72.49 0.55 1.03 16 22 O -0.41 -7.51 11.65 -148.98 -1.74 -9.24 16 23 C 0.04 0.63 6.51 72.49 0.47 1.10 16 24 C -0.05 -1.63 9.69 22.25 0.22 -1.41 16 25 C -0.21 -8.95 9.99 22.39 0.22 -8.73 16 26 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 27 H 0.12 5.18 5.64 -2.91 -0.02 5.17 16 28 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.04 0.86 8.08 -2.38 -0.02 0.84 16 30 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 31 H 0.34 6.90 8.72 -89.69 -0.78 6.12 16 32 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 1.07 7.63 -2.39 -0.02 1.05 16 34 H 0.07 1.01 7.96 -2.39 -0.02 0.99 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.84 7.73 -2.39 -0.02 0.82 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.90 7.74 -2.39 -0.02 0.88 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 43 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -71.05 354.35 1.56 -69.49 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.22 Total: 26.54 kcal Atomic # 6 Polarization: -47.62 SS G_CDS: 4.34 Total: -43.28 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -3.07 Total: -74.00 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -1.96 Total: -23.71 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -71.05 1.56 -69.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220702073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.491 kcal (2) G-P(sol) polarization free energy of solvation -71.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds