Wall clock time and date at job start Tue Mar 31 2020 08:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48501 * 109.47067 * 240.00538 * 3 2 1 5 5 H 1.48501 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47187 * 120.00381 * 3 2 1 7 7 C 1.38651 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00502 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35754 * 117.00355 * 185.05761 * 9 7 2 11 11 C 1.38904 * 120.06564 * 354.47145 * 10 9 7 12 12 C 1.38079 * 119.92946 * 180.02562 * 11 10 9 13 13 C 1.38317 * 120.07004 * 0.02562 * 12 11 10 14 14 C 1.38282 * 120.14106 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.96701 * 179.97438 * 14 13 12 16 16 N 1.46896 * 109.47203 * 90.00246 * 15 14 13 17 17 C 1.46900 * 110.99976 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47262 * 179.97438 * 17 16 15 19 19 C 1.52991 * 109.47225 * 179.97438 * 18 17 16 20 20 H 1.08996 * 110.80664 * 305.70492 * 19 18 17 21 21 C 1.54811 * 110.90875 * 182.07567 * 19 18 17 22 22 C 1.54105 * 104.18749 * 220.92569 * 21 19 18 23 23 O 1.43740 * 107.29163 * 357.96751 * 22 21 19 24 24 C 1.44419 * 107.00366 * 26.49034 * 23 22 21 25 25 C 1.38125 * 120.06229 * 359.67418 * 14 13 12 26 26 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.03500 * 0.02562 * 11 10 9 28 28 H 1.08005 * 119.96350 * 179.97438 * 12 11 10 29 29 H 1.08001 * 119.92871 * 179.97438 * 13 12 11 30 30 H 1.08996 * 109.46652 * 209.99953 * 15 14 13 31 31 H 1.08997 * 109.47156 * 329.99859 * 15 14 13 32 32 H 1.00902 * 111.00109 * 56.04355 * 16 15 14 33 33 H 1.08995 * 109.47377 * 300.00081 * 17 16 15 34 34 H 1.09008 * 109.46883 * 59.99919 * 17 16 15 35 35 H 1.09002 * 109.47087 * 300.00812 * 18 17 16 36 36 H 1.09007 * 109.46729 * 59.99830 * 18 17 16 37 37 H 1.09002 * 110.48775 * 339.59859 * 21 19 18 38 38 H 1.08996 * 110.49317 * 102.24593 * 21 19 18 39 39 H 1.09001 * 109.87834 * 117.39735 * 22 21 19 40 40 H 1.09004 * 109.87418 * 238.39019 * 22 21 19 41 41 H 1.08994 * 110.64844 * 201.47971 * 24 23 22 42 42 H 1.08997 * 110.59617 * 78.47174 * 24 23 22 43 43 H 1.08005 * 120.03001 * 180.32135 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2126 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4573 -3.4396 0.0922 12 6 4.2024 -4.5971 0.1998 13 6 3.5685 -5.8206 0.3202 14 6 2.1875 -5.8889 0.3327 15 6 1.5010 -7.2241 0.4635 16 7 1.2838 -7.5259 1.8846 17 6 0.6145 -8.8229 2.0510 18 6 0.4066 -9.1022 3.5409 19 6 -0.2911 -10.4527 3.7141 20 1 -1.2140 -10.4888 3.1354 21 6 -0.5649 -10.7453 5.2095 22 6 -0.2356 -12.2424 5.3679 23 8 0.1339 -12.7382 4.0703 24 6 0.6534 -11.6174 3.3222 25 6 1.4366 -4.7339 0.2317 26 1 -0.4850 0.8401 0.0004 27 1 3.9528 -2.4846 -0.0022 28 1 5.2812 -4.5472 0.1891 29 1 4.1535 -6.7246 0.4037 30 1 0.5410 -7.1909 -0.0517 31 1 2.1255 -7.9988 0.0187 32 1 0.7615 -6.7894 2.3350 33 1 -0.3516 -8.8006 1.5469 34 1 1.2326 -9.6091 1.6171 35 1 1.3729 -9.1246 4.0446 36 1 -0.2113 -8.3160 3.9750 37 1 0.0868 -10.1423 5.8418 38 1 -1.6114 -10.5573 5.4497 39 1 0.5947 -12.3677 6.0629 40 1 -1.1110 -12.7774 5.7362 41 1 0.5990 -11.8119 2.2511 42 1 1.6782 -11.3982 3.6220 43 1 0.3580 -4.7874 0.2468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220709159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:04 Heat of formation + Delta-G solvation = -60.910895 kcal Electronic energy + Delta-G solvation = -21951.575529 eV Core-core repulsion = 18575.778274 eV Total energy + Delta-G solvation = -3375.797255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.78752 -39.08125 -37.19437 -35.96977 -33.74564 -32.27973 -31.13306 -29.91577 -29.02420 -27.46721 -25.44053 -24.47263 -23.30273 -21.89551 -21.55362 -20.84794 -20.44115 -17.67365 -17.11201 -16.82660 -16.11582 -15.90346 -15.32392 -15.04813 -14.74972 -14.47855 -14.36787 -14.11868 -13.96963 -13.52230 -13.40286 -13.17553 -12.58152 -12.42304 -12.27651 -11.92472 -11.83941 -11.70133 -11.51777 -11.31676 -11.13604 -10.99836 -10.79664 -10.73721 -10.64161 -10.59658 -10.41168 -9.98206 -9.34299 -8.83421 -8.44588 -8.05821 -7.22350 -6.44335 -4.03692 2.10453 2.39769 3.13132 3.14294 3.16924 3.60842 3.96460 4.11984 4.21859 4.45312 4.58741 4.69967 4.82570 4.92910 4.97878 5.07559 5.10807 5.16955 5.26351 5.35370 5.38823 5.44646 5.48371 5.53552 5.56760 5.62579 5.70407 5.78223 5.86866 5.91520 5.97535 6.05086 6.20012 6.33254 6.54521 6.66085 6.90972 7.03469 7.07504 7.27521 7.39021 7.43579 7.45228 7.83092 8.00602 9.01453 9.71737 10.73813 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028385 B = 0.002352 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.191768 B =11900.170869 C =12471.330487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.152 3.848 11 C -0.231 4.231 12 C -0.078 4.078 13 C -0.189 4.189 14 C -0.048 4.048 15 C 0.106 3.894 16 N -0.685 5.685 17 C 0.057 3.943 18 C -0.108 4.108 19 C -0.120 4.120 20 H 0.085 0.915 21 C -0.153 4.153 22 C 0.046 3.954 23 O -0.382 6.382 24 C 0.050 3.950 25 C -0.185 4.185 26 H 0.270 0.730 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.345 0.655 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 -18.740 7.154 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.099 3.901 11 C -0.250 4.250 12 C -0.096 4.096 13 C -0.208 4.208 14 C -0.048 4.048 15 C -0.022 4.022 16 N -0.316 5.316 17 C -0.073 4.073 18 C -0.146 4.146 19 C -0.139 4.139 20 H 0.103 0.897 21 C -0.191 4.191 22 C -0.031 4.031 23 O -0.301 6.301 24 C -0.026 4.026 25 C -0.205 4.205 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.163 0.837 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.026 -19.003 7.147 20.329 hybrid contribution -0.359 1.379 -0.178 1.436 sum 0.667 -17.625 6.970 18.964 Atomic orbital electron populations 1.70032 1.05941 1.27710 1.46314 1.25276 0.95842 0.98797 0.96613 0.85789 0.78694 0.79818 0.79175 1.19525 1.20303 1.19514 1.21264 0.91750 0.80852 1.52938 0.89173 1.83975 1.34241 1.11380 1.78774 1.19306 0.90277 0.88000 0.92531 1.21197 0.93836 0.98991 1.10982 1.20750 0.98452 0.92402 0.97978 1.20416 0.93468 0.96898 1.10045 1.19167 0.93538 0.92769 0.99363 1.20789 0.98333 0.94709 0.88377 1.60514 1.53246 1.04121 1.13730 1.21995 0.96771 0.92596 0.95918 1.21539 1.01086 0.95381 0.96578 1.22730 0.99608 0.95514 0.96076 0.89679 1.23008 1.02884 0.96427 0.96762 1.23143 0.99953 0.93905 0.86057 1.88865 1.83017 1.32564 1.25700 1.23700 0.96885 0.84974 0.97086 1.20025 0.99058 0.90076 1.11358 0.92024 0.85655 0.87486 0.87623 0.94702 0.90645 0.83651 0.95330 0.91110 0.90615 0.91416 0.90291 0.90464 0.92459 0.90040 0.88960 0.91768 0.86970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.38 13.67 55.48 0.76 -24.63 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.54 29.55 -169.99 -5.02 15.51 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -10.97 9.49 30.88 0.29 -10.68 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 9 O -0.18 -5.14 9.76 0.04 0.00 -5.14 16 10 C 0.15 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.23 -5.05 9.17 -39.39 -0.36 -5.41 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.19 -3.31 9.70 -39.54 -0.38 -3.69 16 14 C -0.05 -0.84 5.39 -104.65 -0.56 -1.41 16 15 C 0.11 1.48 5.81 -4.98 -0.03 1.46 16 16 N -0.68 -8.71 6.49 -115.06 -0.75 -9.46 16 17 C 0.06 0.56 5.56 -3.82 -0.02 0.54 16 18 C -0.11 -0.92 4.87 -26.74 -0.13 -1.05 16 19 C -0.12 -0.93 3.12 -88.62 -0.28 -1.21 16 20 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 21 C -0.15 -1.07 6.60 -25.20 -0.17 -1.24 16 22 C 0.05 0.35 7.70 37.73 0.29 0.64 16 23 O -0.38 -3.93 11.52 -35.23 -0.41 -4.33 16 24 C 0.05 0.42 6.49 38.21 0.25 0.67 16 25 C -0.19 -3.88 9.65 -39.40 -0.38 -4.26 16 26 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 28 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 29 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.03 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 32 H 0.35 4.57 8.72 -39.29 -0.34 4.23 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.66 7.58 -51.92 -0.39 0.27 16 35 H 0.08 0.68 8.05 -51.93 -0.42 0.27 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.71 8.11 -51.93 -0.42 0.28 16 42 H 0.06 0.52 7.98 -51.93 -0.41 0.11 16 43 H 0.11 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -30.86 354.68 -9.05 -39.91 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.75 Total: 5.87 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.23 Total: -23.08 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.01 Total: -34.08 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.41 Total: -9.47 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.86 -9.05 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220709159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.003 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds