Wall clock time and date at job start Tue Mar 31 2020 08:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48501 * 109.47067 * 240.00538 * 3 2 1 5 5 H 1.48501 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47187 * 120.00381 * 3 2 1 7 7 C 1.38651 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00502 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35754 * 117.00355 * 185.05761 * 9 7 2 11 11 C 1.38904 * 120.06564 * 354.47145 * 10 9 7 12 12 C 1.38079 * 119.92946 * 180.02562 * 11 10 9 13 13 C 1.38317 * 120.07004 * 0.02562 * 12 11 10 14 14 C 1.38282 * 120.14106 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.96701 * 179.97438 * 14 13 12 16 16 N 1.46896 * 109.47203 * 90.00246 * 15 14 13 17 17 C 1.46900 * 110.99976 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47262 * 179.97438 * 17 16 15 19 19 C 1.52991 * 109.47225 * 179.97438 * 18 17 16 20 20 H 1.08996 * 110.80664 * 305.70492 * 19 18 17 21 21 C 1.54811 * 110.90875 * 182.07567 * 19 18 17 22 22 C 1.54105 * 104.18749 * 220.92569 * 21 19 18 23 23 O 1.43740 * 107.29163 * 357.96751 * 22 21 19 24 24 C 1.44419 * 107.00366 * 26.49034 * 23 22 21 25 25 C 1.38125 * 120.06229 * 359.67418 * 14 13 12 26 26 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.03500 * 0.02562 * 11 10 9 28 28 H 1.08005 * 119.96350 * 179.97438 * 12 11 10 29 29 H 1.08001 * 119.92871 * 179.97438 * 13 12 11 30 30 H 1.08996 * 109.46652 * 209.99953 * 15 14 13 31 31 H 1.08997 * 109.47156 * 329.99859 * 15 14 13 32 32 H 1.00902 * 111.00109 * 56.04355 * 16 15 14 33 33 H 1.08995 * 109.47377 * 300.00081 * 17 16 15 34 34 H 1.09008 * 109.46883 * 59.99919 * 17 16 15 35 35 H 1.09002 * 109.47087 * 300.00812 * 18 17 16 36 36 H 1.09007 * 109.46729 * 59.99830 * 18 17 16 37 37 H 1.09002 * 110.48775 * 339.59859 * 21 19 18 38 38 H 1.08996 * 110.49317 * 102.24593 * 21 19 18 39 39 H 1.09001 * 109.87834 * 117.39735 * 22 21 19 40 40 H 1.09004 * 109.87418 * 238.39019 * 22 21 19 41 41 H 1.08994 * 110.64844 * 201.47971 * 24 23 22 42 42 H 1.08997 * 110.59617 * 78.47174 * 24 23 22 43 43 H 1.08005 * 120.03001 * 180.32135 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2126 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4573 -3.4396 0.0922 12 6 4.2024 -4.5971 0.1998 13 6 3.5685 -5.8206 0.3202 14 6 2.1875 -5.8889 0.3327 15 6 1.5010 -7.2241 0.4635 16 7 1.2838 -7.5259 1.8846 17 6 0.6145 -8.8229 2.0510 18 6 0.4066 -9.1022 3.5409 19 6 -0.2911 -10.4527 3.7141 20 1 -1.2140 -10.4888 3.1354 21 6 -0.5649 -10.7453 5.2095 22 6 -0.2356 -12.2424 5.3679 23 8 0.1339 -12.7382 4.0703 24 6 0.6534 -11.6174 3.3222 25 6 1.4366 -4.7339 0.2317 26 1 -0.4850 0.8401 0.0004 27 1 3.9528 -2.4846 -0.0022 28 1 5.2812 -4.5472 0.1891 29 1 4.1535 -6.7246 0.4037 30 1 0.5410 -7.1909 -0.0517 31 1 2.1255 -7.9988 0.0187 32 1 0.7615 -6.7894 2.3350 33 1 -0.3516 -8.8006 1.5469 34 1 1.2326 -9.6091 1.6171 35 1 1.3729 -9.1246 4.0446 36 1 -0.2113 -8.3160 3.9750 37 1 0.0868 -10.1423 5.8418 38 1 -1.6114 -10.5573 5.4497 39 1 0.5947 -12.3677 6.0629 40 1 -1.1110 -12.7774 5.7362 41 1 0.5990 -11.8119 2.2511 42 1 1.6782 -11.3982 3.6220 43 1 0.3580 -4.7874 0.2468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220709159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:03 Heat of formation + Delta-G solvation = -80.997184 kcal Electronic energy + Delta-G solvation = -21952.446536 eV Core-core repulsion = 18575.778274 eV Total energy + Delta-G solvation = -3376.668262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80000 -40.41630 -38.68379 -37.15452 -34.67365 -34.24709 -32.27168 -30.96241 -30.47207 -28.40445 -27.34191 -25.67449 -24.06466 -23.18091 -22.57168 -22.29176 -21.26464 -19.48737 -18.80172 -17.60053 -16.93040 -16.78014 -16.66047 -16.28381 -16.13832 -15.84876 -15.72281 -15.39397 -15.23456 -14.89474 -14.43809 -14.23698 -13.92801 -13.72081 -13.56210 -13.16515 -12.98115 -12.85132 -12.55957 -12.40539 -12.33124 -12.30705 -12.19537 -12.08094 -11.72479 -11.61222 -11.37737 -11.17065 -10.79236 -10.62885 -9.73233 -9.33969 -8.97319 -8.46664 -6.15076 0.52770 0.76866 1.34890 1.45777 1.51098 2.18035 2.78750 2.98240 3.11172 3.40271 3.51830 3.59458 3.85068 3.95264 4.03115 4.12091 4.19503 4.28575 4.32905 4.34495 4.42436 4.48539 4.60208 4.63628 4.71420 4.75694 4.77323 4.86435 4.87463 4.89139 5.03013 5.06885 5.08481 5.13885 5.22491 5.32459 5.38314 5.66546 5.74467 5.80801 5.93162 6.02692 6.05555 6.25578 6.37632 6.98189 7.79421 8.76469 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028385 B = 0.002352 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.191768 B =11900.170869 C =12471.330487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.244 4.244 12 C -0.074 4.074 13 C -0.170 4.170 14 C -0.038 4.038 15 C 0.110 3.890 16 N -0.690 5.690 17 C 0.058 3.942 18 C -0.099 4.099 19 C -0.115 4.115 20 H 0.084 0.916 21 C -0.151 4.151 22 C 0.041 3.959 23 O -0.407 6.407 24 C 0.047 3.953 25 C -0.196 4.196 26 H 0.272 0.728 27 H 0.117 0.883 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.037 0.963 31 H 0.098 0.902 32 H 0.339 0.661 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 -20.577 7.652 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.264 4.264 12 C -0.091 4.091 13 C -0.189 4.189 14 C -0.039 4.039 15 C -0.018 4.018 16 N -0.321 5.321 17 C -0.071 4.071 18 C -0.137 4.137 19 C -0.134 4.134 20 H 0.103 0.897 21 C -0.189 4.189 22 C -0.036 4.036 23 O -0.327 6.327 24 C -0.029 4.029 25 C -0.216 4.216 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.157 0.843 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.058 -20.904 7.650 22.469 hybrid contribution -0.893 1.589 -0.296 1.847 sum 2.164 -19.316 7.354 20.781 Atomic orbital electron populations 1.70182 1.08003 1.28805 1.49045 1.26586 0.96867 1.02731 0.95932 0.84654 0.77391 0.74294 0.79925 1.18152 1.19644 1.18188 1.21771 0.92491 0.81486 1.53203 0.88189 1.83937 1.35887 1.12538 1.81702 1.19883 0.91638 0.87908 0.94421 1.21314 0.93129 1.00212 1.11735 1.21165 1.00248 0.91443 0.96289 1.20953 0.93521 0.97901 1.06562 1.19591 0.93981 0.93324 0.96971 1.20792 0.98558 0.92930 0.89514 1.60540 1.53890 1.05080 1.12584 1.22062 0.96850 0.91267 0.96891 1.21442 1.00978 0.95694 0.95604 1.22660 0.99337 0.94780 0.96660 0.89740 1.23010 1.03519 0.96073 0.96255 1.23295 1.00650 0.94340 0.85301 1.88837 1.83290 1.33730 1.26849 1.23782 0.97024 0.84728 0.97347 1.20239 0.99256 0.90337 1.11754 0.91883 0.86475 0.83772 0.83765 0.94528 0.88331 0.84307 0.95090 0.90030 0.90852 0.91683 0.89812 0.89708 0.91827 0.89140 0.88399 0.91532 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.91 13.67 21.61 0.30 -56.61 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 43.02 29.55 68.60 2.03 45.05 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.41 -24.27 9.49 67.92 0.64 -23.62 16 8 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 9 O -0.23 -14.19 9.76 -22.78 -0.22 -14.41 16 10 C 0.11 5.60 6.65 22.58 0.15 5.75 16 11 C -0.24 -10.73 9.17 22.39 0.21 -10.52 16 12 C -0.07 -2.53 10.04 22.25 0.22 -2.30 16 13 C -0.17 -5.32 9.70 22.30 0.22 -5.10 16 14 C -0.04 -1.27 5.39 -19.88 -0.11 -1.37 16 15 C 0.11 2.76 5.81 85.56 0.50 3.26 16 16 N -0.69 -15.82 6.49 -517.95 -3.36 -19.18 16 17 C 0.06 0.99 5.56 86.30 0.48 1.47 16 18 C -0.10 -1.48 4.87 30.59 0.15 -1.33 16 19 C -0.12 -1.56 3.12 -9.50 -0.03 -1.59 16 20 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 21 C -0.15 -1.83 6.60 31.59 0.21 -1.62 16 22 C 0.04 0.56 7.70 72.36 0.56 1.11 16 23 O -0.41 -7.78 11.52 -148.98 -1.72 -9.50 16 24 C 0.05 0.71 6.49 72.66 0.47 1.18 16 25 C -0.20 -8.33 9.65 22.39 0.22 -8.12 16 26 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 27 H 0.12 5.22 5.64 -2.91 -0.02 5.21 16 28 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.04 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.10 2.07 8.08 -2.39 -0.02 2.05 16 32 H 0.34 8.51 8.72 -89.69 -0.78 7.73 16 33 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 1.25 7.58 -2.38 -0.02 1.23 16 35 H 0.07 1.15 8.05 -2.39 -0.02 1.13 16 36 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.08 0.94 7.86 -2.39 -0.02 0.92 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.10 1.30 8.11 -2.39 -0.02 1.28 16 42 H 0.07 0.95 7.98 -2.39 -0.02 0.93 16 43 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -70.77 354.68 1.59 -69.18 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.22 Total: 29.20 kcal Atomic # 6 Polarization: -48.07 SS G_CDS: 4.35 Total: -43.72 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -3.07 Total: -75.80 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -1.94 Total: -23.91 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -70.77 1.59 -69.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220709159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.815 kcal (2) G-P(sol) polarization free energy of solvation -70.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds