Wall clock time and date at job start Tue Mar 31 2020 07:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86801 * 120.00188 * 2 1 4 4 H 1.48510 * 109.46877 * 274.65704 * 3 2 1 5 5 H 1.48500 * 109.47100 * 34.65537 * 3 2 1 6 6 H 1.48495 * 109.47286 * 154.66110 * 3 2 1 7 7 C 1.39894 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00026 * 162.15554 * 7 2 1 9 9 C 1.41211 * 120.00038 * 342.15385 * 7 2 1 10 10 C 1.40836 * 120.17996 * 155.14604 * 9 7 2 11 11 C 1.36438 * 119.81098 * 180.02562 * 10 9 7 12 12 C 1.39312 * 120.18313 * 359.97438 * 11 10 9 13 13 O 1.35683 * 119.81259 * 179.97438 * 12 11 10 14 14 C 1.42900 * 116.99763 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47222 * 180.02562 * 14 13 12 16 16 H 1.09006 * 109.46903 * 55.00547 * 15 14 13 17 17 O 1.42898 * 109.47485 * 295.00077 * 15 14 13 18 18 C 1.53004 * 109.47220 * 174.99749 * 15 14 13 19 19 N 1.46905 * 109.47076 * 185.00119 * 18 15 14 20 20 C 1.48555 * 110.99826 * 170.00113 * 19 18 15 21 21 C 1.54380 * 104.59455 * 200.96086 * 20 19 18 22 22 C 1.54249 * 105.05906 * 23.85311 * 21 20 19 23 23 C 1.48558 * 110.99835 * 54.58592 * 19 18 15 24 24 C 1.39313 * 120.36949 * 0.25993 * 12 11 10 25 25 C 1.36436 * 120.18260 * 359.48073 * 24 12 11 26 26 H 0.97006 * 119.99853 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.08982 * 0.02562 * 10 9 7 28 28 H 1.07995 * 119.90837 * 179.97438 * 11 10 9 29 29 H 1.09000 * 109.47500 * 60.00163 * 14 13 12 30 30 H 1.09001 * 109.47077 * 300.00674 * 14 13 12 31 31 H 0.96700 * 113.99726 * 300.00020 * 17 15 14 32 32 H 1.09000 * 109.47117 * 65.00569 * 18 15 14 33 33 H 1.09000 * 109.47433 * 305.00426 * 18 15 14 34 34 H 1.09003 * 110.41564 * 319.74384 * 20 19 18 35 35 H 1.09003 * 110.41334 * 82.18172 * 20 19 18 36 36 H 1.08996 * 110.32335 * 142.75588 * 21 20 19 37 37 H 1.09006 * 110.31958 * 264.95511 * 21 20 19 38 38 H 1.09005 * 110.32704 * 241.10633 * 22 21 20 39 39 H 1.08997 * 110.32321 * 118.89995 * 22 21 20 40 40 H 1.09001 * 110.40973 * 277.81733 * 23 19 18 41 41 H 1.09001 * 110.41398 * 40.13766 * 23 19 18 42 42 H 1.07997 * 119.90549 * 179.71654 * 24 12 11 43 43 H 1.08000 * 120.09678 * 180.25119 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3919 2.1032 -1.3956 5 1 1.4930 2.6223 0.7961 6 1 3.5861 1.4137 0.5992 7 6 2.0082 -1.2115 -0.0005 8 1 3.0493 -1.2339 -0.2872 9 6 1.3531 -2.4052 0.3737 10 6 1.8225 -3.6474 -0.0953 11 6 1.1834 -4.7960 0.2706 12 6 0.0700 -4.7424 1.1061 13 8 -0.5601 -5.8893 1.4648 14 6 -1.6958 -5.7643 2.3231 15 6 -2.2684 -7.1524 2.6166 16 1 -1.4840 -7.7903 3.0239 17 8 -2.7696 -7.7263 1.4077 18 6 -3.4056 -7.0305 3.6330 19 7 -3.8756 -8.3717 4.0050 20 6 -4.8080 -8.3077 5.1597 21 6 -4.7817 -9.7296 5.7603 22 6 -3.4291 -10.3259 5.3194 23 6 -2.7520 -9.2141 4.4896 24 6 -0.4037 -3.5173 1.5705 25 6 0.2270 -2.3599 1.2183 26 1 -0.4850 0.8401 -0.0004 27 1 2.6858 -3.6907 -0.7427 28 1 1.5418 -5.7494 -0.0885 29 1 -2.4550 -5.1536 1.8346 30 1 -1.3947 -5.2908 3.2576 31 1 -3.4722 -7.2104 0.9891 32 1 -4.2278 -6.4667 3.1924 33 1 -3.0448 -6.5124 4.5215 34 1 -4.4579 -7.5794 5.8913 35 1 -5.8136 -8.0559 4.8228 36 1 -4.8382 -9.6824 6.8478 37 1 -5.6049 -10.3236 5.3631 38 1 -3.5883 -11.2126 4.7058 39 1 -2.8217 -10.5714 6.1905 40 1 -2.2094 -9.6448 3.6480 41 1 -2.0788 -8.6272 5.1145 42 1 -1.2703 -3.4841 2.2142 43 1 -0.1390 -1.4113 1.5825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225883926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:46 Heat of formation + Delta-G solvation = -68.325900 kcal Electronic energy + Delta-G solvation = -22591.337811 eV Core-core repulsion = 19215.219017 eV Total energy + Delta-G solvation = -3376.118794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.56932 -38.71705 -37.09451 -35.93288 -33.34173 -32.63647 -30.02538 -29.61097 -29.14201 -28.69595 -25.57800 -24.48189 -22.56810 -21.24676 -21.10958 -20.49461 -20.25231 -17.37106 -17.15049 -16.56963 -16.44066 -16.04038 -15.51013 -15.20244 -14.68116 -14.40893 -14.06013 -13.94065 -13.53623 -13.22614 -12.82958 -12.63257 -12.41642 -12.24950 -12.02090 -11.80961 -11.72619 -11.54322 -11.44342 -11.35677 -11.12297 -11.00521 -10.78554 -10.69572 -10.58945 -9.93427 -9.91007 -9.77436 -9.37000 -9.01742 -8.69731 -7.66329 -7.01478 -6.73842 -4.25804 2.76042 2.95729 3.07201 3.11507 3.20829 3.51202 3.94302 4.04864 4.38844 4.45228 4.54550 4.61040 4.73615 4.94229 5.00570 5.01188 5.16900 5.25832 5.29936 5.42833 5.46208 5.51427 5.56735 5.63755 5.67201 5.75530 5.83175 5.89072 6.04533 6.09588 6.28056 6.59370 6.68483 6.75915 6.88655 7.06083 7.27231 7.40273 7.55366 7.76793 7.89799 7.99527 8.14804 8.44031 8.64416 8.89455 8.98633 10.21119 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035300 B = 0.002625 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.014361 B =10665.485865 C =11074.643070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.196 4.196 11 C -0.112 4.112 12 C -0.010 4.010 13 O -0.318 6.318 14 C 0.038 3.962 15 C 0.114 3.886 16 H 0.104 0.896 17 O -0.541 6.541 18 C 0.015 3.985 19 N -0.499 5.499 20 C 0.029 3.971 21 C -0.124 4.124 22 C -0.124 4.124 23 C 0.027 3.973 24 C -0.174 4.174 25 C -0.135 4.135 26 H 0.279 0.721 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.372 0.628 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.092 0.908 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -12.163 10.310 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.215 4.215 11 C -0.131 4.131 12 C -0.053 4.053 13 O -0.234 6.234 14 C -0.039 4.039 15 C 0.054 3.946 16 H 0.122 0.878 17 O -0.345 6.345 18 C -0.114 4.114 19 N -0.223 5.223 20 C -0.099 4.099 21 C -0.162 4.162 22 C -0.163 4.163 23 C -0.101 4.101 24 C -0.193 4.193 25 C -0.154 4.154 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.110 0.890 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.995 -12.856 9.896 18.551 hybrid contribution 0.119 2.031 0.724 2.160 sum -8.876 -10.825 10.620 17.572 Atomic orbital electron populations 1.69843 1.07536 1.29015 1.36290 1.25878 0.94710 1.01230 0.92373 0.86336 0.80743 0.80836 0.79011 1.19623 1.20144 1.18486 1.19464 0.98091 0.91202 1.40549 0.90486 1.17599 0.91852 0.92190 0.89865 1.20610 1.03228 0.92241 1.05454 1.19622 0.95649 0.97712 1.00091 1.18604 0.97656 0.83851 1.05208 1.85863 1.41942 1.30648 1.64935 1.23122 0.89244 0.97046 0.94494 1.21915 0.94104 0.93489 0.85127 0.87793 1.86613 1.57517 1.52102 1.38302 1.22931 0.98546 0.91039 0.98905 1.65402 1.12721 1.11026 1.33165 1.23176 0.98072 0.96928 0.91761 1.22282 0.98146 0.95746 1.00029 1.22287 0.96036 0.98526 0.99412 1.23189 0.93560 0.94791 0.98545 1.20590 1.01335 0.92961 1.04446 1.20931 0.98549 0.96431 0.99508 0.91031 0.88173 0.88462 0.92724 0.92609 0.78101 0.89795 0.93447 0.93874 0.90102 0.91458 0.91007 0.90915 0.91416 0.89427 0.93816 0.88953 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.76 10.98 55.54 0.61 -20.15 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.34 9.04 -37.83 -0.34 -12.68 16 8 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 9 C 0.09 2.34 5.57 -106.80 -0.59 1.75 16 10 C -0.20 -4.88 9.74 -39.25 -0.38 -5.27 16 11 C -0.11 -2.66 9.92 -39.83 -0.40 -3.05 16 12 C -0.01 -0.23 6.71 -38.78 -0.26 -0.50 16 13 O -0.32 -6.62 10.09 -23.60 -0.24 -6.86 16 14 C 0.04 0.61 4.36 37.15 0.16 0.77 16 15 C 0.11 1.50 3.02 -26.73 -0.08 1.42 16 16 H 0.10 1.44 6.56 -51.93 -0.34 1.10 16 17 O -0.54 -7.80 13.25 -40.08 -0.53 -8.33 16 18 C 0.01 0.16 4.69 -3.82 -0.02 0.14 16 19 N -0.50 -5.31 5.44 -229.97 -1.25 -6.56 16 20 C 0.03 0.25 6.49 -2.18 -0.01 0.23 16 21 C -0.12 -0.93 7.00 -25.35 -0.18 -1.11 16 22 C -0.12 -1.01 7.00 -25.36 -0.18 -1.18 16 23 C 0.03 0.27 5.10 -2.18 -0.01 0.26 16 24 C -0.17 -4.11 8.96 -39.83 -0.36 -4.47 16 25 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 26 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 27 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 28 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.05 0.84 7.64 -51.93 -0.40 0.45 16 30 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 31 H 0.37 4.21 9.05 45.56 0.41 4.62 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.48 7.88 -51.93 -0.41 0.07 16 34 H 0.04 0.36 7.82 -51.93 -0.41 -0.04 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.97 7.56 -51.93 -0.39 0.58 16 41 H 0.04 0.43 7.99 -51.93 -0.42 0.01 16 42 H 0.09 1.92 6.27 -52.49 -0.33 1.59 16 43 H 0.12 3.20 6.18 -52.49 -0.32 2.88 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -29.75 347.82 -10.21 -39.95 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.93 Total: 8.79 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -3.08 Total: -25.74 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: -0.64 Total: -26.71 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.77 Total: -15.19 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.75 -10.21 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225883926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.374 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds