Wall clock time and date at job start Tue Mar 31 2020 07:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86801 * 120.00188 * 2 1 4 4 H 1.48510 * 109.46877 * 274.65704 * 3 2 1 5 5 H 1.48500 * 109.47100 * 34.65537 * 3 2 1 6 6 H 1.48495 * 109.47286 * 154.66110 * 3 2 1 7 7 C 1.39894 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00026 * 162.15554 * 7 2 1 9 9 C 1.41211 * 120.00038 * 342.15385 * 7 2 1 10 10 C 1.40836 * 120.17996 * 155.14604 * 9 7 2 11 11 C 1.36438 * 119.81098 * 180.02562 * 10 9 7 12 12 C 1.39312 * 120.18313 * 359.97438 * 11 10 9 13 13 O 1.35683 * 119.81259 * 179.97438 * 12 11 10 14 14 C 1.42900 * 116.99763 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47222 * 180.02562 * 14 13 12 16 16 H 1.09006 * 109.46903 * 55.00547 * 15 14 13 17 17 O 1.42898 * 109.47485 * 295.00077 * 15 14 13 18 18 C 1.53004 * 109.47220 * 174.99749 * 15 14 13 19 19 N 1.46905 * 109.47076 * 185.00119 * 18 15 14 20 20 C 1.48555 * 110.99826 * 170.00113 * 19 18 15 21 21 C 1.54380 * 104.59455 * 200.96086 * 20 19 18 22 22 C 1.54249 * 105.05906 * 23.85311 * 21 20 19 23 23 C 1.48558 * 110.99835 * 54.58592 * 19 18 15 24 24 C 1.39313 * 120.36949 * 0.25993 * 12 11 10 25 25 C 1.36436 * 120.18260 * 359.48073 * 24 12 11 26 26 H 0.97006 * 119.99853 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.08982 * 0.02562 * 10 9 7 28 28 H 1.07995 * 119.90837 * 179.97438 * 11 10 9 29 29 H 1.09000 * 109.47500 * 60.00163 * 14 13 12 30 30 H 1.09001 * 109.47077 * 300.00674 * 14 13 12 31 31 H 0.96700 * 113.99726 * 300.00020 * 17 15 14 32 32 H 1.09000 * 109.47117 * 65.00569 * 18 15 14 33 33 H 1.09000 * 109.47433 * 305.00426 * 18 15 14 34 34 H 1.09003 * 110.41564 * 319.74384 * 20 19 18 35 35 H 1.09003 * 110.41334 * 82.18172 * 20 19 18 36 36 H 1.08996 * 110.32335 * 142.75588 * 21 20 19 37 37 H 1.09006 * 110.31958 * 264.95511 * 21 20 19 38 38 H 1.09005 * 110.32704 * 241.10633 * 22 21 20 39 39 H 1.08997 * 110.32321 * 118.89995 * 22 21 20 40 40 H 1.09001 * 110.40973 * 277.81733 * 23 19 18 41 41 H 1.09001 * 110.41398 * 40.13766 * 23 19 18 42 42 H 1.07997 * 119.90549 * 179.71654 * 24 12 11 43 43 H 1.08000 * 120.09678 * 180.25119 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3919 2.1032 -1.3956 5 1 1.4930 2.6223 0.7961 6 1 3.5861 1.4137 0.5992 7 6 2.0082 -1.2115 -0.0005 8 1 3.0493 -1.2339 -0.2872 9 6 1.3531 -2.4052 0.3737 10 6 1.8225 -3.6474 -0.0953 11 6 1.1834 -4.7960 0.2706 12 6 0.0700 -4.7424 1.1061 13 8 -0.5601 -5.8893 1.4648 14 6 -1.6958 -5.7643 2.3231 15 6 -2.2684 -7.1524 2.6166 16 1 -1.4840 -7.7903 3.0239 17 8 -2.7696 -7.7263 1.4077 18 6 -3.4056 -7.0305 3.6330 19 7 -3.8756 -8.3717 4.0050 20 6 -4.8080 -8.3077 5.1597 21 6 -4.7817 -9.7296 5.7603 22 6 -3.4291 -10.3259 5.3194 23 6 -2.7520 -9.2141 4.4896 24 6 -0.4037 -3.5173 1.5705 25 6 0.2270 -2.3599 1.2183 26 1 -0.4850 0.8401 -0.0004 27 1 2.6858 -3.6907 -0.7427 28 1 1.5418 -5.7494 -0.0885 29 1 -2.4550 -5.1536 1.8346 30 1 -1.3947 -5.2908 3.2576 31 1 -3.4722 -7.2104 0.9891 32 1 -4.2278 -6.4667 3.1924 33 1 -3.0448 -6.5124 4.5215 34 1 -4.4579 -7.5794 5.8913 35 1 -5.8136 -8.0559 4.8228 36 1 -4.8382 -9.6824 6.8478 37 1 -5.6049 -10.3236 5.3631 38 1 -3.5883 -11.2126 4.7058 39 1 -2.8217 -10.5714 6.1905 40 1 -2.2094 -9.6448 3.6480 41 1 -2.0788 -8.6272 5.1145 42 1 -1.2703 -3.4841 2.2142 43 1 -0.1390 -1.4113 1.5825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225883926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:45 Heat of formation + Delta-G solvation = -88.061951 kcal Electronic energy + Delta-G solvation = -22592.193631 eV Core-core repulsion = 19215.219017 eV Total energy + Delta-G solvation = -3376.974613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77840 -40.01733 -38.49207 -37.39211 -35.21447 -33.48754 -31.61054 -31.37676 -30.33733 -29.72016 -27.01486 -25.99534 -23.73120 -22.84458 -22.18981 -21.87642 -21.23198 -19.28234 -18.69854 -17.86482 -17.47252 -16.97811 -16.89550 -16.38605 -16.00890 -15.73807 -15.57618 -15.30509 -14.77023 -14.48170 -14.21424 -14.06782 -13.82290 -13.53168 -13.28098 -13.18768 -13.05626 -12.76340 -12.74369 -12.52845 -12.33613 -12.20620 -12.06566 -11.81765 -11.69240 -11.59268 -11.36914 -11.22887 -10.97776 -10.85687 -9.58705 -9.47052 -8.92349 -8.61422 -6.23668 0.92285 1.02739 1.39318 1.48909 1.55259 2.22298 2.34549 2.71187 3.06734 3.47595 3.67123 3.68914 3.72743 3.92257 3.95239 4.07278 4.13257 4.26983 4.31622 4.33434 4.35627 4.45353 4.57707 4.63580 4.71229 4.85739 4.87219 4.95898 4.98265 5.01630 5.08615 5.14031 5.20360 5.27133 5.35580 5.50402 5.64712 5.86555 5.95464 5.96578 6.04966 6.22246 6.54644 6.76737 6.82645 6.94043 7.08540 8.35772 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035300 B = 0.002625 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.014361 B =10665.485865 C =11074.643070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.055 3.945 10 C -0.205 4.205 11 C -0.122 4.122 12 C -0.002 4.002 13 O -0.329 6.329 14 C 0.031 3.969 15 C 0.124 3.876 16 H 0.096 0.904 17 O -0.559 6.559 18 C 0.023 3.977 19 N -0.514 5.514 20 C 0.026 3.974 21 C -0.121 4.121 22 C -0.123 4.123 23 C 0.024 3.976 24 C -0.175 4.175 25 C -0.155 4.155 26 H 0.287 0.713 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.385 0.615 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.119 0.881 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.868 -12.322 11.384 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.052 3.948 10 C -0.225 4.225 11 C -0.141 4.141 12 C -0.046 4.046 13 O -0.245 6.245 14 C -0.045 4.045 15 C 0.064 3.936 16 H 0.114 0.886 17 O -0.366 6.366 18 C -0.106 4.106 19 N -0.239 5.239 20 C -0.101 4.101 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.104 4.104 24 C -0.193 4.193 25 C -0.175 4.175 26 H 0.098 0.902 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.233 0.767 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.136 0.864 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.847 -13.038 10.975 19.682 hybrid contribution 0.289 1.924 0.404 1.987 sum -9.558 -11.114 11.378 18.556 Atomic orbital electron populations 1.69888 1.08935 1.30424 1.36549 1.26731 0.95508 1.04448 0.91327 0.85204 0.79174 0.76068 0.79317 1.18834 1.19052 1.18329 1.19716 0.98358 0.92388 1.42435 0.90606 1.17963 0.92805 0.93173 0.90817 1.20805 1.03748 0.92248 1.05689 1.19899 0.95859 0.98179 1.00157 1.18722 0.97276 0.84549 1.04072 1.85861 1.43385 1.29488 1.65753 1.23467 0.87828 0.99179 0.94050 1.21828 0.94781 0.91509 0.85448 0.88639 1.86580 1.58195 1.52814 1.38970 1.22821 0.97795 0.91591 0.98380 1.65395 1.13184 1.10823 1.34449 1.23251 0.97782 0.97846 0.91224 1.22296 0.97739 0.94921 1.00945 1.22295 0.96484 0.97762 0.99557 1.23191 0.93621 0.95395 0.98224 1.20798 1.01815 0.92325 1.04408 1.20919 0.99287 0.96802 1.00481 0.90221 0.87225 0.86496 0.91978 0.91635 0.76667 0.88753 0.92637 0.93400 0.89580 0.89926 0.90713 0.91095 0.90155 0.91105 0.93752 0.86360 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.62 10.98 21.82 0.24 -43.38 16 2 C 0.03 1.71 5.13 85.24 0.44 2.15 16 3 Si 0.98 38.31 29.60 68.60 2.03 40.34 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.50 -27.20 9.04 23.40 0.21 -26.99 16 8 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 9 C 0.05 3.00 5.57 -21.28 -0.12 2.88 16 10 C -0.21 -10.39 9.74 22.49 0.22 -10.17 16 11 C -0.12 -5.77 9.92 22.11 0.22 -5.55 16 12 C 0.00 -0.11 6.71 22.79 0.15 0.04 16 13 O -0.33 -13.31 10.09 -85.38 -0.86 -14.17 16 14 C 0.03 0.94 4.36 71.98 0.31 1.26 16 15 C 0.12 3.12 3.02 30.59 0.09 3.22 16 16 H 0.10 2.57 6.56 -2.38 -0.02 2.56 16 17 O -0.56 -15.48 13.25 -144.34 -1.91 -17.39 16 18 C 0.02 0.45 4.69 86.30 0.41 0.85 16 19 N -0.51 -10.07 5.44 -881.48 -4.79 -14.86 16 20 C 0.03 0.40 6.49 86.45 0.56 0.96 16 21 C -0.12 -1.53 7.00 31.49 0.22 -1.31 16 22 C -0.12 -1.77 7.00 31.49 0.22 -1.55 16 23 C 0.02 0.44 5.10 86.45 0.44 0.88 16 24 C -0.17 -8.18 8.96 22.11 0.20 -7.98 16 25 C -0.16 -8.24 8.64 22.49 0.19 -8.05 16 26 H 0.29 13.57 8.30 -92.70 -0.77 12.81 16 27 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 28 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 29 H 0.06 1.80 7.64 -2.39 -0.02 1.78 16 30 H 0.07 1.87 7.66 -2.39 -0.02 1.85 16 31 H 0.38 8.18 9.05 -74.06 -0.67 7.51 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.00 7.88 -2.39 -0.02 0.98 16 34 H 0.05 0.68 7.82 -2.39 -0.02 0.66 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.55 7.56 -2.39 -0.02 1.53 16 41 H 0.04 0.81 7.99 -2.39 -0.02 0.79 16 42 H 0.12 4.77 6.27 -2.91 -0.02 4.76 16 43 H 0.11 5.88 6.18 -2.91 -0.02 5.86 16 Total: -1.00 -63.70 347.82 -1.20 -64.90 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.33 Total: 33.94 kcal Atomic # 6 Polarization: -53.13 SS G_CDS: 3.77 Total: -49.36 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -4.55 Total: -58.24 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -2.77 Total: -31.57 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -63.70 -1.20 -64.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225883926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.167 kcal (2) G-P(sol) polarization free energy of solvation -63.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds