Wall clock time and date at job start Tue Mar 31 2020 07:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86793 * 119.99890 * 2 1 4 4 H 1.48501 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47249 * 299.99745 * 3 2 1 6 6 H 1.48499 * 109.47540 * 60.00034 * 3 2 1 7 7 C 1.39892 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99694 * 197.94682 * 7 2 1 9 9 C 1.41210 * 120.00193 * 17.94011 * 7 2 1 10 10 C 1.40829 * 120.17778 * 24.54963 * 9 7 2 11 11 C 1.36446 * 119.81187 * 180.02562 * 10 9 7 12 12 C 1.39315 * 120.18069 * 359.97438 * 11 10 9 13 13 O 1.35674 * 119.81195 * 179.97438 * 12 11 10 14 14 C 1.42902 * 116.99916 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47292 * 180.02562 * 14 13 12 16 16 H 1.09013 * 109.47013 * 305.00099 * 15 14 13 17 17 O 1.42902 * 109.47550 * 64.99984 * 15 14 13 18 18 C 1.53001 * 109.47269 * 185.00342 * 15 14 13 19 19 N 1.46904 * 109.47116 * 180.02562 * 18 15 14 20 20 C 1.48524 * 111.00310 * 52.59921 * 19 18 15 21 21 C 1.54936 * 103.22891 * 159.72263 * 20 19 18 22 22 C 1.54602 * 102.91798 * 322.58588 * 21 20 19 23 23 C 1.47901 * 110.99688 * 169.99963 * 19 18 15 24 24 C 1.39301 * 120.36769 * 0.25295 * 12 11 10 25 25 C 1.36444 * 120.18588 * 359.49032 * 24 12 11 26 26 H 0.97001 * 120.00633 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.09835 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.90766 * 179.97438 * 11 10 9 29 29 H 1.09003 * 109.46817 * 300.00285 * 14 13 12 30 30 H 1.08999 * 109.46907 * 60.00272 * 14 13 12 31 31 H 0.96697 * 114.00087 * 59.99769 * 17 15 14 32 32 H 1.09002 * 109.46594 * 299.99409 * 18 15 14 33 33 H 1.08995 * 109.47442 * 59.99612 * 18 15 14 34 34 H 1.09008 * 110.66826 * 278.15831 * 20 19 18 35 35 H 1.09000 * 110.66836 * 41.28337 * 20 19 18 36 36 H 1.09004 * 110.72688 * 204.22946 * 21 20 19 37 37 H 1.09000 * 110.72617 * 80.94070 * 21 20 19 38 38 H 1.09006 * 110.30603 * 263.03937 * 22 21 20 39 39 H 1.08999 * 110.30746 * 140.87643 * 22 21 20 40 40 H 1.09002 * 109.91928 * 333.50592 * 23 19 18 41 41 H 1.08998 * 109.91858 * 94.60707 * 23 19 18 42 42 H 1.08000 * 119.90583 * 179.72310 * 24 12 11 43 43 H 1.07996 * 120.09237 * 180.25660 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3463 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2888 9 6 1.3537 -2.4049 -0.3756 10 6 0.2248 -2.3584 -1.2162 11 6 -0.4023 -3.5161 -1.5746 12 6 0.0717 -4.7416 -1.1117 13 8 -0.5578 -5.8880 -1.4723 14 6 -0.0207 -7.1107 -0.9636 15 6 -0.8561 -8.2863 -1.4745 16 1 -1.9026 -8.1292 -1.2129 17 8 -0.7289 -8.3795 -2.8948 18 6 -0.3588 -9.5827 -0.8317 19 7 -1.1605 -10.7115 -1.3227 20 6 -1.1959 -10.7335 -2.8074 21 6 -1.5911 -12.1962 -3.1310 22 6 -0.8372 -13.0051 -2.0506 23 6 -0.5646 -12.0021 -0.9144 24 6 1.1849 -4.7959 -0.2760 25 6 1.8266 -3.6480 0.0875 26 1 -0.4851 0.8400 0.0004 27 1 -0.1442 -1.4091 -1.5756 28 1 -1.2684 -3.4822 -2.2188 29 1 1.0094 -7.2234 -1.3017 30 1 -0.0458 -7.0931 0.1259 31 1 0.1778 -8.5198 -3.2001 32 1 0.6876 -9.7398 -1.0934 33 1 -0.4558 -9.5116 0.2516 34 1 -1.9471 -10.0395 -3.1847 35 1 -0.2139 -10.5002 -3.2190 36 1 -1.2522 -12.4756 -4.1287 37 1 -2.6680 -12.3350 -3.0354 38 1 0.1018 -13.3877 -2.4509 39 1 -1.4579 -13.8254 -1.6903 40 1 0.5098 -11.8862 -0.7711 41 1 -1.0270 -12.3488 0.0098 42 1 1.5433 -5.7497 0.0821 43 1 2.6919 -3.6922 0.7321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225883945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:51 Heat of formation + Delta-G solvation = -64.369753 kcal Electronic energy + Delta-G solvation = -22621.823594 eV Core-core repulsion = 19245.876352 eV Total energy + Delta-G solvation = -3375.947243 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.72845 -38.71580 -37.06253 -35.97114 -33.32477 -32.63569 -30.24943 -29.38289 -28.99168 -28.86830 -25.56242 -24.48332 -22.28018 -21.17688 -21.10748 -20.63005 -20.51648 -17.37903 -17.19265 -16.68543 -16.50995 -15.86797 -15.51093 -15.20322 -14.65408 -14.30548 -14.03387 -13.94230 -13.58100 -13.26607 -12.88352 -12.69220 -12.45526 -12.23339 -12.13277 -11.79149 -11.68773 -11.51612 -11.46085 -11.19226 -11.08073 -10.91639 -10.78881 -10.73474 -10.61399 -9.99953 -9.81893 -9.74633 -9.33926 -9.02365 -8.63107 -7.64657 -7.03441 -6.72576 -4.25717 2.76722 2.94686 3.08732 3.13808 3.20228 3.53404 3.95066 4.06571 4.35302 4.46764 4.52573 4.61726 4.71609 4.93462 5.00870 5.10044 5.14539 5.31108 5.32926 5.45092 5.49477 5.55925 5.61941 5.62891 5.67015 5.79712 5.95489 6.01326 6.05519 6.11966 6.22848 6.68841 6.71999 6.80197 6.97497 7.10862 7.18345 7.45622 7.54897 7.58207 7.78796 8.00485 8.20234 8.45058 8.65234 8.89751 8.98516 10.21883 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.057558 B = 0.002456 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.345061 B =11396.723616 C =11637.837086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.134 4.134 11 C -0.119 4.119 12 C -0.009 4.009 13 O -0.317 6.317 14 C 0.040 3.960 15 C 0.112 3.888 16 H 0.114 0.886 17 O -0.547 6.547 18 C 0.019 3.981 19 N -0.514 5.514 20 C 0.046 3.954 21 C -0.132 4.132 22 C -0.131 4.131 23 C 0.033 3.967 24 C -0.168 4.168 25 C -0.199 4.199 26 H 0.280 0.720 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.368 0.632 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 -19.036 -3.249 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.153 4.153 11 C -0.138 4.138 12 C -0.052 4.052 13 O -0.233 6.233 14 C -0.037 4.037 15 C 0.053 3.947 16 H 0.132 0.868 17 O -0.352 6.352 18 C -0.110 4.110 19 N -0.239 5.239 20 C -0.082 4.082 21 C -0.170 4.170 22 C -0.170 4.170 23 C -0.094 4.094 24 C -0.187 4.187 25 C -0.219 4.219 26 H 0.090 0.910 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.215 0.785 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.088 -18.725 -3.090 19.093 hybrid contribution 2.090 0.557 0.147 2.168 sum 0.002 -18.168 -2.943 18.404 Atomic orbital electron populations 1.69840 1.07508 1.29056 1.36035 1.25884 0.94723 1.01250 0.92393 0.86288 0.80947 0.81105 0.78516 1.18500 1.19727 1.20083 1.19486 0.98103 0.91223 1.40501 0.90535 1.17600 0.91860 0.92116 0.89883 1.20988 0.98485 0.96318 0.99504 1.19848 1.00813 0.90223 1.02875 1.18617 0.97013 0.84836 1.04754 1.85886 1.54462 1.12005 1.70908 1.23067 0.96861 0.85135 0.98625 1.21916 1.01713 0.90307 0.80807 0.86808 1.86734 1.32453 1.95165 1.20856 1.22872 0.95178 0.91657 1.01309 1.64775 1.47814 1.01158 1.10121 1.23412 1.01322 0.96135 0.87295 1.22619 1.00842 0.95432 0.98127 1.22394 1.00467 0.98156 0.95947 1.22903 0.97618 0.89947 0.98976 1.20388 0.98046 0.97712 1.02544 1.20556 1.03132 0.92547 1.05643 0.90955 0.85648 0.88419 0.93148 0.92319 0.78495 0.94210 0.89377 0.88108 0.93876 0.91270 0.90929 0.91724 0.91175 0.93946 0.90436 0.89001 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.78 10.96 55.54 0.61 -20.18 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.34 9.04 -37.83 -0.34 -12.68 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 9 C 0.09 2.36 5.57 -106.81 -0.60 1.76 16 10 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 11 C -0.12 -2.92 9.92 -39.83 -0.40 -3.32 16 12 C -0.01 -0.21 6.71 -38.79 -0.26 -0.47 16 13 O -0.32 -6.53 10.09 -23.57 -0.24 -6.77 16 14 C 0.04 0.62 4.37 37.16 0.16 0.78 16 15 C 0.11 1.42 3.34 -26.73 -0.09 1.33 16 16 H 0.11 1.60 8.14 -51.92 -0.42 1.17 16 17 O -0.55 -6.93 9.57 -40.07 -0.38 -7.32 16 18 C 0.02 0.19 4.88 -3.82 -0.02 0.17 16 19 N -0.51 -5.37 5.40 -230.46 -1.24 -6.61 16 20 C 0.05 0.45 4.65 -1.90 -0.01 0.44 16 21 C -0.13 -1.08 7.06 -24.87 -0.18 -1.26 16 22 C -0.13 -0.99 6.93 -25.37 -0.18 -1.16 16 23 C 0.03 0.29 6.69 -2.76 -0.02 0.27 16 24 C -0.17 -3.81 8.96 -39.83 -0.36 -4.16 16 25 C -0.20 -4.91 9.74 -39.25 -0.38 -5.30 16 26 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 27 H 0.13 3.38 6.16 -52.49 -0.32 3.06 16 28 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 29 H 0.05 0.73 7.66 -51.93 -0.40 0.33 16 30 H 0.06 0.87 7.63 -51.93 -0.40 0.47 16 31 H 0.37 3.59 8.34 45.56 0.38 3.97 16 32 H 0.04 0.38 7.81 -51.93 -0.41 -0.03 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.10 1.16 6.83 -51.92 -0.35 0.81 16 35 H 0.04 0.40 6.81 -51.93 -0.35 0.05 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.04 0.35 7.57 -51.93 -0.39 -0.04 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 43 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 342.96 15.07 5.17 5.17 Total: -1.00 -29.20 342.96 -10.13 -39.33 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.93 Total: 8.34 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -3.09 Total: -25.67 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: -0.63 Total: -26.79 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.62 Total: -14.09 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.20 -10.13 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225883945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.035 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds