Wall clock time and date at job start Tue Mar 31 2020 07:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86793 * 119.99890 * 2 1 4 4 H 1.48501 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47249 * 299.99745 * 3 2 1 6 6 H 1.48499 * 109.47540 * 60.00034 * 3 2 1 7 7 C 1.39892 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99694 * 197.94682 * 7 2 1 9 9 C 1.41210 * 120.00193 * 17.94011 * 7 2 1 10 10 C 1.40829 * 120.17778 * 24.54963 * 9 7 2 11 11 C 1.36446 * 119.81187 * 180.02562 * 10 9 7 12 12 C 1.39315 * 120.18069 * 359.97438 * 11 10 9 13 13 O 1.35674 * 119.81195 * 179.97438 * 12 11 10 14 14 C 1.42902 * 116.99916 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47292 * 180.02562 * 14 13 12 16 16 H 1.09013 * 109.47013 * 305.00099 * 15 14 13 17 17 O 1.42902 * 109.47550 * 64.99984 * 15 14 13 18 18 C 1.53001 * 109.47269 * 185.00342 * 15 14 13 19 19 N 1.46904 * 109.47116 * 180.02562 * 18 15 14 20 20 C 1.48524 * 111.00310 * 52.59921 * 19 18 15 21 21 C 1.54936 * 103.22891 * 159.72263 * 20 19 18 22 22 C 1.54602 * 102.91798 * 322.58588 * 21 20 19 23 23 C 1.47901 * 110.99688 * 169.99963 * 19 18 15 24 24 C 1.39301 * 120.36769 * 0.25295 * 12 11 10 25 25 C 1.36444 * 120.18588 * 359.49032 * 24 12 11 26 26 H 0.97001 * 120.00633 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.09835 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.90766 * 179.97438 * 11 10 9 29 29 H 1.09003 * 109.46817 * 300.00285 * 14 13 12 30 30 H 1.08999 * 109.46907 * 60.00272 * 14 13 12 31 31 H 0.96697 * 114.00087 * 59.99769 * 17 15 14 32 32 H 1.09002 * 109.46594 * 299.99409 * 18 15 14 33 33 H 1.08995 * 109.47442 * 59.99612 * 18 15 14 34 34 H 1.09008 * 110.66826 * 278.15831 * 20 19 18 35 35 H 1.09000 * 110.66836 * 41.28337 * 20 19 18 36 36 H 1.09004 * 110.72688 * 204.22946 * 21 20 19 37 37 H 1.09000 * 110.72617 * 80.94070 * 21 20 19 38 38 H 1.09006 * 110.30603 * 263.03937 * 22 21 20 39 39 H 1.08999 * 110.30746 * 140.87643 * 22 21 20 40 40 H 1.09002 * 109.91928 * 333.50592 * 23 19 18 41 41 H 1.08998 * 109.91858 * 94.60707 * 23 19 18 42 42 H 1.08000 * 119.90583 * 179.72310 * 24 12 11 43 43 H 1.07996 * 120.09237 * 180.25660 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3463 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2888 9 6 1.3537 -2.4049 -0.3756 10 6 0.2248 -2.3584 -1.2162 11 6 -0.4023 -3.5161 -1.5746 12 6 0.0717 -4.7416 -1.1117 13 8 -0.5578 -5.8880 -1.4723 14 6 -0.0207 -7.1107 -0.9636 15 6 -0.8561 -8.2863 -1.4745 16 1 -1.9026 -8.1292 -1.2129 17 8 -0.7289 -8.3795 -2.8948 18 6 -0.3588 -9.5827 -0.8317 19 7 -1.1605 -10.7115 -1.3227 20 6 -1.1959 -10.7335 -2.8074 21 6 -1.5911 -12.1962 -3.1310 22 6 -0.8372 -13.0051 -2.0506 23 6 -0.5646 -12.0021 -0.9144 24 6 1.1849 -4.7959 -0.2760 25 6 1.8266 -3.6480 0.0875 26 1 -0.4851 0.8400 0.0004 27 1 -0.1442 -1.4091 -1.5756 28 1 -1.2684 -3.4822 -2.2188 29 1 1.0094 -7.2234 -1.3017 30 1 -0.0458 -7.0931 0.1259 31 1 0.1778 -8.5198 -3.2001 32 1 0.6876 -9.7398 -1.0934 33 1 -0.4558 -9.5116 0.2516 34 1 -1.9471 -10.0395 -3.1847 35 1 -0.2139 -10.5002 -3.2190 36 1 -1.2522 -12.4756 -4.1287 37 1 -2.6680 -12.3350 -3.0354 38 1 0.1018 -13.3877 -2.4509 39 1 -1.4579 -13.8254 -1.6903 40 1 0.5098 -11.8862 -0.7711 41 1 -1.0270 -12.3488 0.0098 42 1 1.5433 -5.7497 0.0821 43 1 2.6919 -3.6922 0.7321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225883945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:50 Heat of formation + Delta-G solvation = -83.199815 kcal Electronic energy + Delta-G solvation = -22622.640127 eV Core-core repulsion = 19245.876352 eV Total energy + Delta-G solvation = -3376.763775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.83635 -40.10359 -38.42553 -37.34615 -35.19206 -33.46692 -31.86358 -31.05439 -30.40613 -29.66581 -27.00657 -25.98714 -23.48699 -22.56347 -22.32324 -21.86824 -21.56927 -19.26685 -18.73335 -17.72333 -17.64562 -17.05701 -16.71773 -16.32736 -15.97132 -15.73305 -15.65812 -15.00610 -14.79323 -14.44746 -14.12819 -14.07863 -13.94900 -13.60049 -13.36341 -13.13907 -13.07470 -12.80868 -12.60855 -12.40627 -12.36834 -12.16637 -11.98693 -11.81620 -11.68832 -11.58970 -11.39183 -11.19704 -10.88725 -10.70631 -9.57280 -9.37391 -8.93501 -8.60309 -6.23455 0.93739 1.01538 1.39744 1.50704 1.55074 2.22518 2.37694 2.71754 3.12607 3.41301 3.69195 3.74107 3.79667 3.93463 4.00680 4.11527 4.14845 4.27676 4.31727 4.34963 4.42673 4.44352 4.66148 4.69677 4.82029 4.85606 4.94922 5.01009 5.03075 5.06830 5.17118 5.20904 5.27761 5.31428 5.34377 5.57643 5.63557 5.87446 5.97126 6.04898 6.05509 6.25453 6.55733 6.71925 6.80770 6.94389 7.09314 8.36504 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.057558 B = 0.002456 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.345061 B =11396.723616 C =11637.837086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.032 3.968 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.153 4.153 11 C -0.134 4.134 12 C 0.000 4.000 13 O -0.331 6.331 14 C 0.033 3.967 15 C 0.124 3.876 16 H 0.096 0.904 17 O -0.559 6.559 18 C 0.027 3.973 19 N -0.531 5.531 20 C 0.046 3.954 21 C -0.131 4.131 22 C -0.128 4.128 23 C 0.031 3.969 24 C -0.164 4.164 25 C -0.208 4.208 26 H 0.287 0.713 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.381 0.619 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.129 0.871 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 -20.587 -3.046 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.528 4.528 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.173 4.173 11 C -0.153 4.153 12 C -0.044 4.044 13 O -0.247 6.247 14 C -0.044 4.044 15 C 0.064 3.936 16 H 0.114 0.886 17 O -0.366 6.366 18 C -0.101 4.101 19 N -0.256 5.256 20 C -0.081 4.081 21 C -0.169 4.169 22 C -0.166 4.166 23 C -0.096 4.096 24 C -0.183 4.183 25 C -0.228 4.228 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.147 0.853 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.006 -20.313 -2.890 20.542 hybrid contribution 1.684 0.849 0.058 1.886 sum 0.677 -19.464 -2.832 19.681 Atomic orbital electron populations 1.69896 1.09008 1.30438 1.36509 1.26762 0.95493 1.04578 0.91366 0.85148 0.79410 0.76217 0.78841 1.18108 1.19009 1.19171 1.19734 0.98366 0.92366 1.42306 0.90530 1.17960 0.92627 0.93405 0.90779 1.20904 0.99367 0.96370 1.00625 1.20013 1.01210 0.90727 1.03368 1.18684 0.96645 0.85474 1.03579 1.85879 1.54843 1.12759 1.71203 1.23446 0.98104 0.83514 0.99295 1.21748 1.00340 0.90507 0.81008 0.88618 1.86725 1.33790 1.95187 1.20875 1.22760 0.95753 0.90276 1.01331 1.64749 1.48485 1.01922 1.10445 1.23332 1.00951 0.96721 0.87124 1.22611 1.00676 0.94500 0.99117 1.22397 1.01047 0.97939 0.95212 1.22963 0.97940 0.89245 0.99470 1.20692 0.97274 0.98689 1.01622 1.20815 1.03679 0.92572 1.05739 0.90207 0.87260 0.87614 0.91582 0.91407 0.76981 0.92771 0.88769 0.90293 0.93295 0.90115 0.91524 0.90601 0.90377 0.93250 0.90236 0.85309 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.35 10.96 21.82 0.24 -44.11 16 2 C 0.03 1.63 5.13 85.24 0.44 2.06 16 3 Si 0.98 38.62 29.59 68.60 2.03 40.65 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 6 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.50 -27.12 9.04 23.40 0.21 -26.91 16 8 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 9 C 0.05 2.99 5.57 -21.28 -0.12 2.87 16 10 C -0.15 -8.35 8.64 22.49 0.19 -8.15 16 11 C -0.13 -6.72 9.92 22.11 0.22 -6.50 16 12 C 0.00 0.00 6.71 22.78 0.15 0.16 16 13 O -0.33 -13.23 10.09 -85.29 -0.86 -14.09 16 14 C 0.03 0.93 4.37 71.98 0.31 1.24 16 15 C 0.12 2.93 3.34 30.59 0.10 3.03 16 16 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 17 O -0.56 -13.41 9.57 -144.35 -1.38 -14.79 16 18 C 0.03 0.50 4.88 86.30 0.42 0.92 16 19 N -0.53 -10.10 5.40 -883.03 -4.76 -14.86 16 20 C 0.05 0.84 4.65 86.65 0.40 1.24 16 21 C -0.13 -1.91 7.06 31.80 0.22 -1.69 16 22 C -0.13 -1.60 6.93 31.47 0.22 -1.38 16 23 C 0.03 0.47 6.69 86.45 0.58 1.05 16 24 C -0.16 -7.19 8.96 22.11 0.20 -6.99 16 25 C -0.21 -10.23 9.74 22.49 0.22 -10.01 16 26 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 27 H 0.11 6.18 6.16 -2.91 -0.02 6.17 16 28 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 29 H 0.07 1.69 7.66 -2.39 -0.02 1.67 16 30 H 0.07 1.82 7.63 -2.39 -0.02 1.81 16 31 H 0.38 6.69 8.34 -74.06 -0.62 6.07 16 32 H 0.05 0.84 7.81 -2.39 -0.02 0.83 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.79 6.83 -2.38 -0.02 1.77 16 35 H 0.05 0.82 6.81 -2.39 -0.02 0.80 16 36 H 0.08 0.98 8.14 -2.38 -0.02 0.97 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 0.67 7.57 -2.39 -0.02 0.65 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 42 H 0.13 4.59 6.27 -2.91 -0.02 4.57 16 43 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -63.47 342.96 -0.57 -64.04 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.39 Total: 32.22 kcal Atomic # 6 Polarization: -52.84 SS G_CDS: 3.78 Total: -49.06 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -4.53 Total: -58.97 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -2.24 Total: -28.88 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -63.47 -0.57 -64.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225883945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.158 kcal (2) G-P(sol) polarization free energy of solvation -63.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds