Wall clock time and date at job start Tue Mar 31 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 113.38344 * 2 1 4 4 C 1.53509 * 114.17533 * 133.08253 * 2 1 3 5 5 N 1.47479 * 87.93570 * 87.62084 * 4 2 1 6 6 C 1.46895 * 110.99923 * 138.70312 * 5 4 2 7 7 C 1.53003 * 109.47094 * 74.03374 * 6 5 4 8 8 C 1.53003 * 109.47256 * 180.02562 * 7 6 5 9 9 S 1.80999 * 109.47148 * 179.97438 * 8 7 6 10 10 C 1.76199 * 99.99825 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99855 * 179.72221 * 10 9 8 13 13 N 1.31634 * 119.99756 * 0.27728 * 12 10 9 14 14 Si 1.86803 * 120.00005 * 180.27923 * 12 10 9 15 15 H 1.48496 * 109.47187 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99999 * 14 12 10 17 17 H 1.48498 * 109.47018 * 240.00046 * 14 12 10 18 18 C 1.47485 * 87.83509 * 27.01240 * 5 4 2 19 19 H 1.09003 * 113.47426 * 87.75688 * 18 5 4 20 20 C 1.50698 * 113.47681 * 218.22547 * 18 5 4 21 21 C 1.38239 * 119.99996 * 20.21907 * 20 18 5 22 22 C 1.38226 * 119.99664 * 179.79126 * 21 20 18 23 23 C 1.38234 * 120.00252 * 0.44179 * 22 21 20 24 24 C 1.38237 * 120.00324 * 359.81222 * 23 22 21 25 25 C 1.38236 * 119.99736 * 200.49711 * 20 18 5 26 26 H 1.09001 * 109.46693 * 193.08128 * 1 2 3 27 27 H 1.09000 * 109.47053 * 313.07303 * 1 2 3 28 28 H 1.08992 * 109.47574 * 73.07957 * 1 2 3 29 29 H 1.09001 * 113.47471 * 332.85045 * 4 2 1 30 30 H 1.08997 * 113.47667 * 202.38957 * 4 2 1 31 31 H 1.08994 * 109.47424 * 314.03163 * 6 5 4 32 32 H 1.09003 * 109.47297 * 194.02806 * 6 5 4 33 33 H 1.08994 * 109.47157 * 59.99626 * 7 6 5 34 34 H 1.09002 * 109.46967 * 299.99495 * 7 6 5 35 35 H 1.08999 * 109.47472 * 59.99258 * 8 7 6 36 36 H 1.09002 * 109.46677 * 299.99620 * 8 7 6 37 37 H 0.97000 * 119.99219 * 179.97438 * 13 12 10 38 38 H 1.07998 * 119.99781 * 359.97438 * 21 20 18 39 39 H 1.08005 * 120.00270 * 180.27160 * 22 21 20 40 40 H 1.08000 * 120.00325 * 179.83583 * 23 22 21 41 41 H 1.07999 * 120.00507 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.00247 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9626 1.0005 0.0000 4 6 2.1586 -0.9566 1.0229 5 7 2.0811 -2.0161 -0.0001 6 6 3.2986 -2.8379 -0.0001 7 6 3.2935 -3.7572 1.2230 8 6 4.5620 -4.6127 1.2233 9 16 4.5563 -5.6996 2.6706 10 6 6.0828 -6.5446 2.4246 11 1 6.6967 -6.3121 1.5670 12 6 6.4993 -7.5046 3.3364 13 7 5.7513 -7.7877 4.3820 14 14 8.1214 -8.3949 3.0798 15 1 8.7676 -7.8984 1.8385 16 1 9.0142 -8.1410 4.2389 17 1 7.8715 -9.8536 2.9577 18 6 2.1585 -0.9566 -1.0231 19 1 3.1797 -0.6905 -1.2961 20 6 1.2821 -1.2140 -2.2216 21 6 0.2208 -2.0946 -2.1255 22 6 -0.5857 -2.3274 -3.2237 23 6 -0.3255 -1.6867 -4.4206 24 6 0.7390 -0.8102 -4.5183 25 6 1.5430 -0.5740 -3.4188 26 1 -0.3633 -1.0010 0.2326 27 1 -0.3633 0.7018 0.7507 28 1 -0.3634 0.2991 -0.9831 29 1 1.5248 -1.1428 1.8899 30 1 3.1798 -0.6905 1.2958 31 1 4.1743 -2.1900 0.0360 32 1 3.3299 -3.4409 -0.9076 33 1 2.4178 -4.4051 1.1869 34 1 3.2623 -3.1542 2.1305 35 1 5.4375 -3.9645 1.2595 36 1 4.5937 -5.2157 0.3158 37 1 6.0423 -8.4589 5.0189 38 1 0.0200 -2.5982 -1.1915 39 1 -1.4176 -3.0120 -3.1474 40 1 -0.9540 -1.8707 -5.2794 41 1 0.9421 -0.3093 -5.4534 42 1 2.3746 0.1108 -3.4951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248369771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:45 Heat of formation + Delta-G solvation = 42.857174 kcal Electronic energy + Delta-G solvation = -20181.536457 eV Core-core repulsion = 17252.991793 eV Total energy + Delta-G solvation = -2928.544663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03546 -38.60906 -34.37158 -32.42071 -31.43207 -30.99090 -30.69874 -26.87610 -25.81776 -25.54315 -23.68340 -22.41800 -21.78729 -20.82417 -18.92069 -17.46097 -16.94726 -16.42772 -15.65600 -15.32400 -14.93444 -14.79773 -14.36358 -14.19273 -14.10434 -13.51646 -13.30631 -12.96741 -12.79986 -12.57093 -12.44167 -12.31802 -11.88244 -11.48179 -11.33942 -11.18497 -11.10752 -11.07125 -10.90076 -10.68629 -10.56096 -10.46898 -10.28030 -9.50016 -9.05711 -8.99516 -8.93237 -8.73005 -8.28272 -6.51380 -6.21952 -3.91852 1.23980 1.34480 3.21398 3.22688 3.30442 3.54054 3.64498 3.97116 4.23045 4.24036 4.63836 4.78011 4.88308 4.88782 4.96354 5.04628 5.11804 5.14181 5.26426 5.27681 5.37111 5.42348 5.45642 5.56423 5.62705 5.70227 5.73987 5.81647 5.87485 5.88357 5.91435 5.98179 6.13050 6.16680 6.23116 6.37257 6.41322 6.46650 6.57154 6.65707 6.77386 6.93195 7.07753 7.61806 8.37916 9.24473 10.86326 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.002787 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.925853 B =10044.337379 C =10525.195636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 H 0.081 0.919 4 C 0.001 3.999 5 N -0.460 5.460 6 C 0.025 3.975 7 C -0.090 4.090 8 C -0.112 4.112 9 S -0.133 6.133 10 C -0.515 4.515 11 H 0.072 0.928 12 C 0.070 3.930 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.064 3.936 19 H 0.083 0.917 20 C -0.064 4.064 21 C -0.087 4.087 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.118 4.118 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.266 0.734 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.318 17.277 -14.132 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 H 0.100 0.900 4 C -0.128 4.128 5 N -0.181 5.181 6 C -0.105 4.105 7 C -0.128 4.128 8 C -0.262 4.262 9 S 0.095 5.905 10 C -0.663 4.663 11 H 0.090 0.910 12 C -0.139 4.139 13 N -0.505 5.505 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.045 4.045 19 H 0.101 0.899 20 C -0.065 4.065 21 C -0.106 4.106 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.136 4.136 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.153 0.847 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.615 16.522 -13.116 24.579 hybrid contribution 2.880 -0.075 -1.190 3.117 sum -9.735 16.446 -14.306 23.873 Atomic orbital electron populations 1.21527 0.92782 1.02586 1.01502 1.22622 0.97169 0.97497 0.95397 0.90032 1.23836 1.00738 0.91501 0.96737 1.68853 1.34932 1.11227 1.03122 1.22730 0.90656 0.96809 1.00257 1.21171 0.97976 0.97204 0.96496 1.23234 0.98886 1.00806 1.03226 1.84631 1.31410 1.45497 1.28913 1.22734 1.05624 1.25102 1.12871 0.90966 1.25023 0.98050 0.96238 0.94550 1.70040 1.37103 1.31616 1.11781 0.86113 0.81953 0.79166 0.78291 1.19624 1.20578 1.20556 1.22402 0.97778 0.92950 0.91390 0.89903 1.19533 0.96275 0.97124 0.93554 1.21166 0.93751 0.96609 0.99031 1.21212 0.99942 1.00044 0.93259 1.21128 0.97914 0.97530 0.97762 1.21042 0.95927 0.99103 0.98329 1.20968 0.99833 1.00226 0.92621 0.91324 0.92702 0.92346 0.89276 0.91104 0.94210 0.90706 0.90860 0.91763 0.92425 0.92177 0.92380 0.84747 0.86250 0.86520 0.86439 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.27 37.16 0.31 -0.82 16 2 C -0.11 -1.00 4.67 -90.09 -0.42 -1.42 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 4 C 0.00 0.01 6.53 -7.55 -0.05 -0.04 16 5 N -0.46 -5.56 4.91 -237.87 -1.17 -6.73 16 6 C 0.03 0.35 4.82 -3.83 -0.02 0.33 16 7 C -0.09 -1.51 5.32 -26.73 -0.14 -1.65 16 8 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 9 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 10 C -0.52 -14.99 9.50 30.94 0.29 -14.69 16 11 H 0.07 2.04 7.80 -52.49 -0.41 1.64 16 12 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 13 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 14 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 C 0.06 0.67 3.24 -72.58 -0.23 0.44 16 19 H 0.08 0.84 7.77 -51.93 -0.40 0.44 16 20 C -0.06 -0.69 4.34 -104.62 -0.45 -1.14 16 21 C -0.09 -0.96 7.86 -39.59 -0.31 -1.27 16 22 C -0.13 -1.26 10.05 -39.59 -0.40 -1.66 16 23 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 25 C -0.12 -1.15 9.74 -39.58 -0.39 -1.54 16 26 H 0.07 0.68 6.98 -51.93 -0.36 0.32 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.53 7.27 -51.93 -0.38 0.16 16 29 H 0.09 0.96 8.12 -51.93 -0.42 0.54 16 30 H 0.07 0.75 7.70 -51.93 -0.40 0.35 16 31 H 0.04 0.53 7.56 -51.93 -0.39 0.13 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.08 7.67 -51.93 -0.40 0.68 16 35 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 36 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.13 1.57 6.75 -52.49 -0.35 1.21 16 39 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -31.23 353.04 -11.82 -43.04 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.88 Total: -0.27 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -2.49 Total: -26.74 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: -0.43 Total: -32.25 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.23 -11.82 -43.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248369771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.900 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds