Wall clock time and date at job start Tue Mar 31 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 113.38344 * 2 1 4 4 C 1.53509 * 114.17533 * 133.08253 * 2 1 3 5 5 N 1.47479 * 87.93570 * 87.62084 * 4 2 1 6 6 C 1.46895 * 110.99923 * 138.70312 * 5 4 2 7 7 C 1.53003 * 109.47094 * 74.03374 * 6 5 4 8 8 C 1.53003 * 109.47256 * 180.02562 * 7 6 5 9 9 S 1.80999 * 109.47148 * 179.97438 * 8 7 6 10 10 C 1.76199 * 99.99825 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99855 * 179.72221 * 10 9 8 13 13 N 1.31634 * 119.99756 * 0.27728 * 12 10 9 14 14 Si 1.86803 * 120.00005 * 180.27923 * 12 10 9 15 15 H 1.48496 * 109.47187 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99999 * 14 12 10 17 17 H 1.48498 * 109.47018 * 240.00046 * 14 12 10 18 18 C 1.47485 * 87.83509 * 27.01240 * 5 4 2 19 19 H 1.09003 * 113.47426 * 87.75688 * 18 5 4 20 20 C 1.50698 * 113.47681 * 218.22547 * 18 5 4 21 21 C 1.38239 * 119.99996 * 20.21907 * 20 18 5 22 22 C 1.38226 * 119.99664 * 179.79126 * 21 20 18 23 23 C 1.38234 * 120.00252 * 0.44179 * 22 21 20 24 24 C 1.38237 * 120.00324 * 359.81222 * 23 22 21 25 25 C 1.38236 * 119.99736 * 200.49711 * 20 18 5 26 26 H 1.09001 * 109.46693 * 193.08128 * 1 2 3 27 27 H 1.09000 * 109.47053 * 313.07303 * 1 2 3 28 28 H 1.08992 * 109.47574 * 73.07957 * 1 2 3 29 29 H 1.09001 * 113.47471 * 332.85045 * 4 2 1 30 30 H 1.08997 * 113.47667 * 202.38957 * 4 2 1 31 31 H 1.08994 * 109.47424 * 314.03163 * 6 5 4 32 32 H 1.09003 * 109.47297 * 194.02806 * 6 5 4 33 33 H 1.08994 * 109.47157 * 59.99626 * 7 6 5 34 34 H 1.09002 * 109.46967 * 299.99495 * 7 6 5 35 35 H 1.08999 * 109.47472 * 59.99258 * 8 7 6 36 36 H 1.09002 * 109.46677 * 299.99620 * 8 7 6 37 37 H 0.97000 * 119.99219 * 179.97438 * 13 12 10 38 38 H 1.07998 * 119.99781 * 359.97438 * 21 20 18 39 39 H 1.08005 * 120.00270 * 180.27160 * 22 21 20 40 40 H 1.08000 * 120.00325 * 179.83583 * 23 22 21 41 41 H 1.07999 * 120.00507 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.00247 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9626 1.0005 0.0000 4 6 2.1586 -0.9566 1.0229 5 7 2.0811 -2.0161 -0.0001 6 6 3.2986 -2.8379 -0.0001 7 6 3.2935 -3.7572 1.2230 8 6 4.5620 -4.6127 1.2233 9 16 4.5563 -5.6996 2.6706 10 6 6.0828 -6.5446 2.4246 11 1 6.6967 -6.3121 1.5670 12 6 6.4993 -7.5046 3.3364 13 7 5.7513 -7.7877 4.3820 14 14 8.1214 -8.3949 3.0798 15 1 8.7676 -7.8984 1.8385 16 1 9.0142 -8.1410 4.2389 17 1 7.8715 -9.8536 2.9577 18 6 2.1585 -0.9566 -1.0231 19 1 3.1797 -0.6905 -1.2961 20 6 1.2821 -1.2140 -2.2216 21 6 0.2208 -2.0946 -2.1255 22 6 -0.5857 -2.3274 -3.2237 23 6 -0.3255 -1.6867 -4.4206 24 6 0.7390 -0.8102 -4.5183 25 6 1.5430 -0.5740 -3.4188 26 1 -0.3633 -1.0010 0.2326 27 1 -0.3633 0.7018 0.7507 28 1 -0.3634 0.2991 -0.9831 29 1 1.5248 -1.1428 1.8899 30 1 3.1798 -0.6905 1.2958 31 1 4.1743 -2.1900 0.0360 32 1 3.3299 -3.4409 -0.9076 33 1 2.4178 -4.4051 1.1869 34 1 3.2623 -3.1542 2.1305 35 1 5.4375 -3.9645 1.2595 36 1 4.5937 -5.2157 0.3158 37 1 6.0423 -8.4589 5.0189 38 1 0.0200 -2.5982 -1.1915 39 1 -1.4176 -3.0120 -3.1474 40 1 -0.9540 -1.8707 -5.2794 41 1 0.9421 -0.3093 -5.4534 42 1 2.3746 0.1108 -3.4951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248369771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:45 Heat of formation + Delta-G solvation = 26.285643 kcal Electronic energy + Delta-G solvation = -20182.255052 eV Core-core repulsion = 17252.991793 eV Total energy + Delta-G solvation = -2929.263259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.87916 -39.36637 -35.64154 -34.61819 -32.25242 -31.81536 -31.58378 -28.14217 -27.56225 -26.61094 -24.80841 -23.24994 -22.57923 -22.06350 -19.71805 -19.55856 -17.72539 -17.40352 -16.91671 -16.63732 -16.23248 -16.05365 -15.78230 -15.32461 -15.04775 -14.77694 -14.25954 -14.09035 -13.86171 -13.61325 -13.51363 -13.29672 -13.19450 -12.97926 -12.93059 -12.60082 -12.39459 -12.34881 -12.05529 -11.83762 -11.71781 -11.60288 -11.28419 -11.17779 -11.15578 -10.34315 -9.85893 -9.71112 -9.48622 -8.69171 -8.39269 -6.15889 0.50450 0.60562 1.30083 1.37161 1.48178 1.72172 2.26290 2.83930 2.94915 3.07426 3.30709 3.43750 3.81889 3.93884 4.01983 4.04021 4.12084 4.20712 4.25039 4.37025 4.40356 4.42046 4.47152 4.58271 4.69723 4.71229 4.73760 4.80932 4.83854 4.97045 5.04637 5.13372 5.15876 5.16794 5.23523 5.28182 5.37753 5.38810 5.50339 5.65942 5.72657 5.81949 6.14481 6.16505 6.21404 7.02886 8.70514 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.002787 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.925853 B =10044.337379 C =10525.195636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.096 4.096 3 H 0.101 0.899 4 C -0.003 4.003 5 N -0.472 5.472 6 C 0.038 3.962 7 C -0.076 4.076 8 C -0.087 4.087 9 S -0.198 6.198 10 C -0.538 4.538 11 H 0.072 0.928 12 C 0.014 3.986 13 N -0.907 5.907 14 Si 0.996 3.004 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.271 1.271 18 C 0.065 3.935 19 H 0.090 0.910 20 C -0.076 4.076 21 C -0.103 4.103 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.125 4.125 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.272 0.728 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.585 18.510 -15.788 26.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.115 4.115 3 H 0.119 0.881 4 C -0.132 4.132 5 N -0.194 5.194 6 C -0.092 4.092 7 C -0.115 4.115 8 C -0.236 4.236 9 S 0.031 5.969 10 C -0.686 4.686 11 H 0.090 0.910 12 C -0.191 4.191 13 N -0.544 5.544 14 Si 0.818 3.182 15 H -0.187 1.187 16 H -0.195 1.195 17 H -0.196 1.196 18 C -0.044 4.044 19 H 0.108 0.892 20 C -0.076 4.076 21 C -0.121 4.121 22 C -0.156 4.156 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.144 4.144 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.895 17.766 -14.775 25.989 hybrid contribution 2.561 -0.402 -0.724 2.692 sum -9.334 17.364 -15.500 25.077 Atomic orbital electron populations 1.21475 0.92675 1.02032 1.01738 1.22599 0.97155 0.97935 0.93811 0.88089 1.23900 1.01104 0.91517 0.96676 1.68861 1.33799 1.12155 1.04587 1.22515 0.92072 0.96588 0.98051 1.21026 0.95378 0.96912 0.98201 1.23155 1.01037 0.99743 0.99706 1.84650 1.31496 1.47509 1.33256 1.23063 1.06294 1.25952 1.13244 0.91009 1.26097 1.02131 0.96875 0.93965 1.70168 1.39199 1.32313 1.12715 0.84946 0.76793 0.77806 0.78696 1.18674 1.19528 1.19637 1.22462 0.98291 0.92374 0.91261 0.89203 1.19619 0.96342 0.97547 0.94123 1.21139 0.94671 0.97352 0.98954 1.21417 1.00216 1.00486 0.93437 1.21426 0.98217 0.97122 0.98047 1.21373 0.95468 0.98802 0.99073 1.21209 1.00438 1.00344 0.92362 0.92779 0.91504 0.92499 0.89755 0.90669 0.93217 0.91235 0.92035 0.91834 0.91927 0.92232 0.91926 0.86180 0.85291 0.84487 0.84210 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 8.27 71.98 0.60 -1.44 16 2 C -0.10 -1.61 4.67 -10.45 -0.05 -1.66 16 3 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 4 C 0.00 -0.07 6.53 83.57 0.55 0.48 16 5 N -0.47 -11.10 4.91 -906.50 -4.45 -15.55 16 6 C 0.04 1.02 4.82 86.31 0.42 1.43 16 7 C -0.08 -2.56 5.32 30.60 0.16 -2.40 16 8 C -0.09 -3.60 5.67 71.98 0.41 -3.19 16 9 S -0.20 -10.79 21.44 -56.49 -1.21 -12.00 16 10 C -0.54 -31.65 9.50 67.96 0.65 -31.00 16 11 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 12 C 0.01 0.82 5.49 84.86 0.47 1.28 16 13 N -0.91 -55.50 13.22 21.65 0.29 -55.21 16 14 Si 1.00 44.46 29.55 68.60 2.03 46.48 16 15 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.07 1.27 3.24 41.44 0.13 1.41 16 19 H 0.09 1.63 7.77 -2.39 -0.02 1.62 16 20 C -0.08 -1.54 4.34 -19.87 -0.09 -1.62 16 21 C -0.10 -2.24 7.86 22.27 0.18 -2.06 16 22 C -0.14 -2.63 10.05 22.27 0.22 -2.41 16 23 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 24 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 25 C -0.13 -2.19 9.74 22.27 0.22 -1.98 16 26 H 0.05 1.06 6.98 -2.39 -0.02 1.05 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.97 7.27 -2.39 -0.02 0.96 16 29 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 30 H 0.08 1.47 7.70 -2.39 -0.02 1.45 16 31 H 0.05 1.23 7.56 -2.39 -0.02 1.22 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.06 2.14 7.67 -2.39 -0.02 2.12 16 35 H 0.06 2.52 8.14 -2.40 -0.02 2.50 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.12 2.89 6.75 -2.91 -0.02 2.87 16 39 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -67.54 353.04 1.92 -65.61 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.97 Total: 17.63 kcal Atomic # 6 Polarization: -51.25 SS G_CDS: 4.30 Total: -46.95 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -4.17 Total: -70.77 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -10.79 SS G_CDS: -1.21 Total: -12.00 kcal Total: -67.54 1.92 -65.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248369771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.899 kcal (2) G-P(sol) polarization free energy of solvation -67.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds