Wall clock time and date at job start Tue Mar 31 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 113.25618 * 2 1 4 4 C 1.53514 * 114.16785 * 226.79144 * 2 1 3 5 5 N 1.47488 * 87.93091 * 220.32981 * 4 2 1 6 6 C 1.46899 * 110.99898 * 138.70496 * 5 4 2 7 7 C 1.52997 * 109.47254 * 74.02885 * 6 5 4 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 9 9 S 1.80997 * 109.47641 * 179.97438 * 8 7 6 10 10 C 1.76204 * 100.00365 * 180.02562 * 9 8 7 11 11 H 1.07992 * 119.99729 * 0.02562 * 10 9 8 12 12 C 1.38797 * 119.99828 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00295 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99600 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46970 * 90.00861 * 14 12 10 16 16 H 1.48505 * 109.47256 * 210.00376 * 14 12 10 17 17 H 1.48495 * 109.47519 * 330.00538 * 14 12 10 18 18 C 1.47481 * 87.83366 * 27.01284 * 5 4 2 19 19 H 1.08994 * 113.47620 * 87.81974 * 18 5 4 20 20 C 1.50697 * 113.47356 * 218.22137 * 18 5 4 21 21 C 1.38243 * 119.99913 * 20.22666 * 20 18 5 22 22 C 1.38235 * 119.99688 * 179.78826 * 21 20 18 23 23 C 1.38237 * 120.00167 * 0.43841 * 22 21 20 24 24 C 1.38228 * 119.99890 * 359.81305 * 23 22 21 25 25 C 1.38235 * 120.00365 * 359.97438 * 24 23 22 26 26 H 1.08994 * 109.46974 * 287.04930 * 1 2 3 27 27 H 1.09001 * 109.46935 * 47.04748 * 1 2 3 28 28 H 1.09003 * 109.47261 * 167.05037 * 1 2 3 29 29 H 1.08997 * 113.47606 * 105.56640 * 4 2 1 30 30 H 1.09004 * 113.47932 * 335.09382 * 4 2 1 31 31 H 1.09002 * 109.47043 * 194.02956 * 6 5 4 32 32 H 1.09001 * 109.47354 * 314.03017 * 6 5 4 33 33 H 1.09002 * 109.47153 * 300.00004 * 7 6 5 34 34 H 1.08998 * 109.47533 * 59.99633 * 7 6 5 35 35 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 36 36 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 37 37 H 0.96999 * 119.99948 * 180.02562 * 13 12 10 38 38 H 1.07995 * 119.99909 * 359.97438 * 21 20 18 39 39 H 1.08001 * 119.99905 * 180.27368 * 22 21 20 40 40 H 1.08001 * 120.00113 * 179.83581 * 23 22 21 41 41 H 1.08001 * 119.99981 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.00022 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9604 1.0014 0.0000 4 6 2.1585 -0.9589 -1.0208 5 7 3.1619 -1.3060 0.0030 6 6 3.4330 -2.7497 0.0062 7 6 4.2787 -3.1125 -1.2161 8 6 4.5617 -4.6161 -1.2125 9 16 5.5615 -5.0455 -2.6588 10 6 5.7314 -6.7814 -2.4091 11 1 5.2744 -7.2506 -1.5505 12 6 6.4517 -7.5459 -3.3164 13 7 7.0083 -6.9740 -4.3633 14 14 6.6323 -9.3861 -3.0512 15 1 5.5128 -10.0950 -3.7214 16 1 7.9229 -9.8447 -3.6253 17 1 6.6050 -9.6816 -1.5962 18 6 2.1585 -0.9544 1.0251 19 1 1.5098 -1.7857 1.3007 20 6 2.7427 -0.2495 2.2222 21 6 3.9721 0.3751 2.1246 22 6 4.5059 1.0253 3.2214 23 6 3.8146 1.0433 4.4184 24 6 2.5877 0.4144 4.5173 25 6 2.0517 -0.2322 3.4193 26 1 -0.3633 0.3013 0.9825 27 1 -0.3633 0.7003 -0.7522 28 1 -0.3634 -1.0015 -0.2303 29 1 2.5811 -0.4530 -1.8889 30 1 1.5090 -1.7913 -1.2920 31 1 3.9740 -3.0158 0.9143 32 1 2.4907 -3.2965 -0.0288 33 1 3.7377 -2.8465 -2.1242 34 1 5.2210 -2.5658 -1.1813 35 1 5.1029 -4.8817 -0.3044 36 1 3.6196 -5.1632 -1.2472 37 1 7.5113 -7.5083 -4.9975 38 1 4.5141 0.3575 1.1906 39 1 5.4644 1.5171 3.1440 40 1 4.2329 1.5491 5.2760 41 1 2.0473 0.4288 5.4523 42 1 1.0930 -0.7232 3.4966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248369772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:49 Heat of formation + Delta-G solvation = 40.089399 kcal Electronic energy + Delta-G solvation = -20034.782326 eV Core-core repulsion = 17106.117643 eV Total energy + Delta-G solvation = -2928.664683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91879 -38.63941 -34.35183 -32.41950 -31.50251 -31.13506 -30.80039 -26.97195 -25.85231 -25.51863 -23.20127 -22.60314 -21.57973 -20.70941 -19.58467 -17.46741 -17.19579 -15.76169 -15.73279 -15.34305 -14.88614 -14.79289 -14.46701 -14.32325 -13.98041 -13.48294 -13.30726 -13.11362 -12.90917 -12.70815 -12.59980 -12.02844 -11.96403 -11.55175 -11.45734 -11.19719 -11.11637 -11.05927 -10.95195 -10.69841 -10.59339 -10.47298 -10.27590 -9.50593 -9.04825 -9.00277 -8.95750 -8.73173 -8.28576 -6.51295 -6.21610 -3.91701 1.23286 1.33734 3.21950 3.22966 3.29723 3.53909 3.64124 3.96550 4.21908 4.23861 4.58434 4.76315 4.84044 4.90046 5.02951 5.06022 5.12506 5.14487 5.19913 5.26024 5.36943 5.42978 5.45683 5.48229 5.53294 5.57227 5.71737 5.75260 5.84834 5.86688 5.87877 5.98366 6.11009 6.12934 6.16865 6.36886 6.41128 6.46102 6.56744 6.65307 6.77351 6.92825 7.07458 7.61640 8.37848 9.24609 10.86612 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.002800 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.119599 B = 9996.982435 C =10566.036290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.102 0.898 4 C 0.002 3.998 5 N -0.463 5.463 6 C 0.026 3.974 7 C -0.090 4.090 8 C -0.112 4.112 9 S -0.132 6.132 10 C -0.516 4.516 11 H 0.072 0.928 12 C 0.070 3.930 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.067 3.933 19 H 0.084 0.916 20 C -0.068 4.068 21 C -0.091 4.091 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.117 4.117 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.267 0.733 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.154 16.789 14.097 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.120 0.880 4 C -0.127 4.127 5 N -0.184 5.184 6 C -0.104 4.104 7 C -0.129 4.129 8 C -0.262 4.262 9 S 0.096 5.904 10 C -0.664 4.664 11 H 0.090 0.910 12 C -0.138 4.138 13 N -0.506 5.506 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.043 4.043 19 H 0.102 0.898 20 C -0.069 4.069 21 C -0.109 4.109 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.135 4.135 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.936 17.672 13.080 24.556 hybrid contribution -1.011 -2.603 1.200 3.039 sum -11.947 15.070 14.280 23.953 Atomic orbital electron populations 1.21718 0.94236 1.02069 1.01999 1.22823 0.95507 0.98976 0.95342 0.88022 1.23869 0.93803 0.98325 0.96703 1.68842 1.28900 1.17395 1.03260 1.22724 0.99444 0.87912 1.00284 1.21172 1.00268 0.94939 0.96498 1.23233 1.02511 0.97171 1.03248 1.84629 1.66373 1.10510 1.28893 1.22691 1.39025 0.91703 1.12989 0.91013 1.25017 0.94778 0.99459 0.94571 1.70026 1.32598 1.36106 1.11824 0.86168 0.77736 0.83068 0.78566 1.20296 1.20738 1.19688 1.22406 0.93225 0.97313 0.91344 0.89816 1.19611 0.95157 0.98349 0.93735 1.21159 0.94939 0.95598 0.99196 1.21218 0.99977 0.99846 0.93270 1.21136 0.95419 1.00026 0.97767 1.21050 0.96226 0.98745 0.98352 1.20967 0.99870 1.00094 0.92600 0.92277 0.92092 0.92501 0.89387 0.90982 0.90690 0.94198 0.91744 0.90845 0.92165 0.92419 0.92320 0.84747 0.86205 0.86472 0.86397 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.79 37.16 0.36 -0.71 16 2 C -0.11 -0.99 4.22 -90.09 -0.38 -1.37 16 3 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 4 C 0.00 0.02 6.57 -7.54 -0.05 -0.03 16 5 N -0.46 -5.68 5.11 -237.86 -1.22 -6.90 16 6 C 0.03 0.36 4.82 -3.83 -0.02 0.35 16 7 C -0.09 -1.52 5.32 -26.74 -0.14 -1.66 16 8 C -0.11 -2.32 5.67 37.15 0.21 -2.11 16 9 S -0.13 -3.53 21.44 -107.50 -2.30 -5.83 16 10 C -0.52 -15.02 9.50 30.94 0.29 -14.72 16 11 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 12 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 13 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 14 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 C 0.07 0.70 2.87 -72.58 -0.21 0.49 16 19 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 20 C -0.07 -0.74 5.34 -104.62 -0.56 -1.30 16 21 C -0.09 -1.03 9.43 -39.58 -0.37 -1.40 16 22 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.13 -1.17 10.05 -39.59 -0.40 -1.57 16 24 C -0.13 -1.16 10.05 -39.59 -0.40 -1.55 16 25 C -0.12 -1.15 9.74 -39.58 -0.39 -1.53 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.77 7.49 -51.93 -0.39 0.38 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.04 0.53 7.56 -51.93 -0.39 0.14 16 33 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 36 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.13 1.60 7.36 -52.49 -0.39 1.22 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -31.34 358.70 -11.93 -43.27 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.99 Total: -0.28 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -2.54 Total: -26.85 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: -0.48 Total: -32.45 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.34 -11.93 -43.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248369772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.359 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds