Wall clock time and date at job start Tue Mar 31 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 113.25618 * 2 1 4 4 C 1.53514 * 114.16785 * 226.79144 * 2 1 3 5 5 N 1.47488 * 87.93091 * 220.32981 * 4 2 1 6 6 C 1.46899 * 110.99898 * 138.70496 * 5 4 2 7 7 C 1.52997 * 109.47254 * 74.02885 * 6 5 4 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 9 9 S 1.80997 * 109.47641 * 179.97438 * 8 7 6 10 10 C 1.76204 * 100.00365 * 180.02562 * 9 8 7 11 11 H 1.07992 * 119.99729 * 0.02562 * 10 9 8 12 12 C 1.38797 * 119.99828 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00295 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99600 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46970 * 90.00861 * 14 12 10 16 16 H 1.48505 * 109.47256 * 210.00376 * 14 12 10 17 17 H 1.48495 * 109.47519 * 330.00538 * 14 12 10 18 18 C 1.47481 * 87.83366 * 27.01284 * 5 4 2 19 19 H 1.08994 * 113.47620 * 87.81974 * 18 5 4 20 20 C 1.50697 * 113.47356 * 218.22137 * 18 5 4 21 21 C 1.38243 * 119.99913 * 20.22666 * 20 18 5 22 22 C 1.38235 * 119.99688 * 179.78826 * 21 20 18 23 23 C 1.38237 * 120.00167 * 0.43841 * 22 21 20 24 24 C 1.38228 * 119.99890 * 359.81305 * 23 22 21 25 25 C 1.38235 * 120.00365 * 359.97438 * 24 23 22 26 26 H 1.08994 * 109.46974 * 287.04930 * 1 2 3 27 27 H 1.09001 * 109.46935 * 47.04748 * 1 2 3 28 28 H 1.09003 * 109.47261 * 167.05037 * 1 2 3 29 29 H 1.08997 * 113.47606 * 105.56640 * 4 2 1 30 30 H 1.09004 * 113.47932 * 335.09382 * 4 2 1 31 31 H 1.09002 * 109.47043 * 194.02956 * 6 5 4 32 32 H 1.09001 * 109.47354 * 314.03017 * 6 5 4 33 33 H 1.09002 * 109.47153 * 300.00004 * 7 6 5 34 34 H 1.08998 * 109.47533 * 59.99633 * 7 6 5 35 35 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 36 36 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 37 37 H 0.96999 * 119.99948 * 180.02562 * 13 12 10 38 38 H 1.07995 * 119.99909 * 359.97438 * 21 20 18 39 39 H 1.08001 * 119.99905 * 180.27368 * 22 21 20 40 40 H 1.08001 * 120.00113 * 179.83581 * 23 22 21 41 41 H 1.08001 * 119.99981 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.00022 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9604 1.0014 0.0000 4 6 2.1585 -0.9589 -1.0208 5 7 3.1619 -1.3060 0.0030 6 6 3.4330 -2.7497 0.0062 7 6 4.2787 -3.1125 -1.2161 8 6 4.5617 -4.6161 -1.2125 9 16 5.5615 -5.0455 -2.6588 10 6 5.7314 -6.7814 -2.4091 11 1 5.2744 -7.2506 -1.5505 12 6 6.4517 -7.5459 -3.3164 13 7 7.0083 -6.9740 -4.3633 14 14 6.6323 -9.3861 -3.0512 15 1 5.5128 -10.0950 -3.7214 16 1 7.9229 -9.8447 -3.6253 17 1 6.6050 -9.6816 -1.5962 18 6 2.1585 -0.9544 1.0251 19 1 1.5098 -1.7857 1.3007 20 6 2.7427 -0.2495 2.2222 21 6 3.9721 0.3751 2.1246 22 6 4.5059 1.0253 3.2214 23 6 3.8146 1.0433 4.4184 24 6 2.5877 0.4144 4.5173 25 6 2.0517 -0.2322 3.4193 26 1 -0.3633 0.3013 0.9825 27 1 -0.3633 0.7003 -0.7522 28 1 -0.3634 -1.0015 -0.2303 29 1 2.5811 -0.4530 -1.8889 30 1 1.5090 -1.7913 -1.2920 31 1 3.9740 -3.0158 0.9143 32 1 2.4907 -3.2965 -0.0288 33 1 3.7377 -2.8465 -2.1242 34 1 5.2210 -2.5658 -1.1813 35 1 5.1029 -4.8817 -0.3044 36 1 3.6196 -5.1632 -1.2472 37 1 7.5113 -7.5083 -4.9975 38 1 4.5141 0.3575 1.1906 39 1 5.4644 1.5171 3.1440 40 1 4.2329 1.5491 5.2760 41 1 2.0473 0.4288 5.4523 42 1 1.0930 -0.7232 3.4966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248369772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:48 Heat of formation + Delta-G solvation = 23.443695 kcal Electronic energy + Delta-G solvation = -20035.504138 eV Core-core repulsion = 17106.117643 eV Total energy + Delta-G solvation = -2929.386495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.77767 -39.40462 -35.62711 -34.61765 -32.24747 -32.06368 -31.62052 -28.20802 -27.59403 -26.64943 -24.36071 -23.39711 -22.33664 -21.98173 -20.38717 -19.57027 -17.97693 -16.91430 -16.83829 -16.63945 -16.36954 -16.06079 -15.63755 -15.29599 -15.13344 -14.75079 -14.33512 -14.14228 -13.85454 -13.72217 -13.49504 -13.39645 -13.12726 -12.96801 -12.87330 -12.72365 -12.41475 -12.31958 -12.08530 -11.87466 -11.83321 -11.61353 -11.30764 -11.17139 -11.14316 -10.34738 -9.89347 -9.74346 -9.50024 -8.69306 -8.39016 -6.15884 0.48382 0.58258 1.29909 1.38302 1.47516 1.71763 2.26494 2.82828 2.95091 3.05094 3.30644 3.42828 3.77130 3.92916 3.99216 4.06065 4.10437 4.23615 4.24559 4.36819 4.37878 4.43101 4.46620 4.52555 4.68171 4.71263 4.74503 4.77152 4.83459 4.84209 4.99202 5.07689 5.14611 5.21398 5.26040 5.26984 5.36572 5.37795 5.42152 5.64316 5.70639 5.79572 6.13287 6.16361 6.19713 7.02925 8.70542 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.002800 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.119599 B = 9996.982435 C =10566.036290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.097 0.903 4 C -0.003 4.003 5 N -0.477 5.477 6 C 0.039 3.961 7 C -0.077 4.077 8 C -0.087 4.087 9 S -0.197 6.197 10 C -0.539 4.539 11 H 0.072 0.928 12 C 0.014 3.986 13 N -0.908 5.908 14 Si 0.995 3.005 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.263 1.263 18 C 0.069 3.931 19 H 0.090 0.910 20 C -0.081 4.081 21 C -0.110 4.110 22 C -0.136 4.136 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.123 4.123 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.272 0.728 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.623 16.567 15.865 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.116 0.884 4 C -0.131 4.131 5 N -0.198 5.198 6 C -0.091 4.091 7 C -0.116 4.116 8 C -0.236 4.236 9 S 0.031 5.969 10 C -0.687 4.687 11 H 0.090 0.910 12 C -0.190 4.190 13 N -0.544 5.544 14 Si 0.817 3.183 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.187 1.187 18 C -0.040 4.040 19 H 0.108 0.892 20 C -0.082 4.082 21 C -0.129 4.129 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.142 4.142 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.412 17.468 14.850 26.071 hybrid contribution -0.569 -2.426 0.702 2.589 sum -12.981 15.041 15.551 25.230 Atomic orbital electron populations 1.21696 0.92554 1.02526 1.02798 1.22729 0.96705 0.98139 0.93724 0.88437 1.23940 0.93616 0.98891 0.96668 1.68844 1.30385 1.15832 1.04780 1.22509 0.99083 0.89431 0.98115 1.21028 1.00354 0.92000 0.98182 1.23151 1.01126 0.99626 0.99743 1.84652 1.68458 1.10554 1.33226 1.23033 1.39610 0.92623 1.13386 0.90969 1.26094 0.93988 1.04972 0.93985 1.70159 1.33208 1.38275 1.12765 0.84999 0.78180 0.76185 0.78941 1.19142 1.19840 1.18743 1.22447 0.92651 0.97702 0.91174 0.89194 1.19723 0.95288 0.98748 0.94409 1.21160 0.95561 0.96948 0.99202 1.21428 1.00652 0.99878 0.93439 1.21448 0.95503 0.99833 0.98038 1.21400 0.96224 0.97873 0.99127 1.21213 1.00520 1.00149 0.92276 0.91455 0.91263 0.92262 0.89825 0.90600 0.91198 0.93192 0.91808 0.92030 0.92210 0.91876 0.91917 0.86209 0.85190 0.84333 0.84029 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.79 71.98 0.70 -1.08 16 2 C -0.09 -1.61 4.22 -10.45 -0.04 -1.66 16 3 H 0.10 1.77 8.11 -2.39 -0.02 1.75 16 4 C 0.00 -0.05 6.57 83.58 0.55 0.50 16 5 N -0.48 -11.49 5.11 -906.47 -4.63 -16.12 16 6 C 0.04 1.05 4.82 86.30 0.42 1.47 16 7 C -0.08 -2.59 5.32 30.59 0.16 -2.43 16 8 C -0.09 -3.61 5.67 71.98 0.41 -3.20 16 9 S -0.20 -10.79 21.44 -56.49 -1.21 -12.01 16 10 C -0.54 -31.72 9.50 67.95 0.65 -31.07 16 11 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 12 C 0.01 0.84 5.49 84.86 0.47 1.30 16 13 N -0.91 -55.57 13.22 21.65 0.29 -55.28 16 14 Si 1.00 44.42 29.55 68.60 2.03 46.45 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 18 C 0.07 1.38 2.87 41.44 0.12 1.50 16 19 H 0.09 1.68 7.73 -2.39 -0.02 1.66 16 20 C -0.08 -1.69 5.34 -19.86 -0.11 -1.80 16 21 C -0.11 -2.49 9.43 22.27 0.21 -2.28 16 22 C -0.14 -2.66 10.05 22.27 0.22 -2.44 16 23 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 24 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 25 C -0.12 -2.18 9.74 22.27 0.22 -1.96 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.75 7.90 -2.39 -0.02 0.73 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 1.52 7.49 -2.38 -0.02 1.50 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 1.25 7.56 -2.39 -0.02 1.24 16 33 H 0.06 2.16 7.67 -2.39 -0.02 2.14 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.06 2.54 8.14 -2.40 -0.02 2.52 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.12 2.97 7.36 -2.91 -0.02 2.95 16 39 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 42 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -67.85 358.70 1.86 -66.00 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.97 Total: 17.93 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 4.42 Total: -46.96 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -4.34 Total: -71.41 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -10.79 SS G_CDS: -1.21 Total: -12.01 kcal Total: -67.85 1.86 -66.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248369772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.439 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds