Wall clock time and date at job start Tue Mar 31 2020 07:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86800 * 120.00120 * 2 1 4 4 H 1.48500 * 109.46924 * 269.99897 * 3 2 1 5 5 H 1.48499 * 109.46804 * 29.99754 * 3 2 1 6 6 H 1.48497 * 109.47477 * 149.99781 * 3 2 1 7 7 C 1.38654 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99912 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00287 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00152 * 185.05026 * 9 7 2 11 11 C 1.38878 * 120.06908 * 354.46614 * 10 9 7 12 12 C 1.38098 * 119.92892 * 179.97438 * 11 10 9 13 13 C 1.38308 * 120.07208 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.93169 * 179.97438 * 13 12 11 15 15 N 1.46899 * 109.47330 * 89.99747 * 14 13 12 16 16 C 1.46842 * 110.99918 * 169.99934 * 15 14 13 17 17 C 1.53045 * 109.52190 * 185.83618 * 16 15 14 18 18 C 1.53111 * 109.27858 * 300.81925 * 17 16 15 19 19 C 1.53000 * 109.52355 * 177.55907 * 18 17 16 20 20 O 1.42900 * 109.47127 * 65.31815 * 19 18 17 21 21 C 1.53122 * 109.15956 * 57.65684 * 18 17 16 22 22 C 1.46845 * 110.99788 * 294.20832 * 15 14 13 23 23 C 1.38304 * 120.13665 * 0.26778 * 13 12 11 24 24 C 1.38102 * 120.06773 * 359.49805 * 23 13 12 25 25 H 0.96993 * 120.00525 * 0.02562 * 1 2 3 26 26 H 1.07992 * 120.03555 * 359.95186 * 11 10 9 27 27 H 1.08006 * 119.96818 * 179.97438 * 12 11 10 28 28 H 1.08997 * 109.47092 * 329.99223 * 14 13 12 29 29 H 1.09004 * 109.47184 * 209.99784 * 14 13 12 30 30 H 1.08994 * 109.46497 * 305.85109 * 16 15 14 31 31 H 1.09000 * 109.46860 * 65.82570 * 16 15 14 32 32 H 1.08998 * 109.50114 * 60.76359 * 17 16 15 33 33 H 1.09000 * 109.50437 * 180.88063 * 17 16 15 34 34 H 1.08995 * 109.52669 * 297.75306 * 18 17 16 35 35 H 1.08999 * 109.47476 * 185.32361 * 19 18 17 36 36 H 1.09006 * 109.47169 * 305.31842 * 19 18 17 37 37 H 0.96698 * 113.99557 * 180.02562 * 20 19 18 38 38 H 1.09003 * 109.50256 * 182.40174 * 21 18 17 39 39 H 1.08993 * 109.53879 * 62.30631 * 21 18 17 40 40 H 1.09000 * 109.46242 * 294.17480 * 22 15 14 41 41 H 1.09003 * 109.46487 * 54.15327 * 22 15 14 42 42 H 1.07992 * 119.96679 * 179.72303 * 23 13 12 43 43 H 1.07999 * 120.03800 * 180.25363 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 0.1076 11 6 3.4572 -3.4394 0.0950 12 6 4.2023 -4.5969 0.2046 13 6 3.5686 -5.8201 0.3273 14 6 4.3848 -7.0813 0.4461 15 7 4.6573 -7.3566 1.8631 16 6 5.2419 -8.6924 2.0366 17 6 5.3770 -9.0015 3.5294 18 6 6.2691 -7.9444 4.1859 19 6 6.3586 -8.2131 5.6894 20 8 7.0295 -9.4550 5.9123 21 6 5.6633 -6.5582 3.9490 22 6 5.5199 -6.3199 2.4441 23 6 2.1873 -5.8888 0.3351 24 6 1.4365 -4.7344 0.2307 25 1 -0.4850 0.8399 -0.0004 26 1 3.9526 -2.4846 -0.0007 27 1 5.2812 -4.5470 0.1945 28 1 5.3270 -6.9559 -0.0875 29 1 3.8308 -7.9147 0.0140 30 1 4.5957 -9.4352 1.5690 31 1 6.2262 -8.7218 1.5693 32 1 4.3915 -8.9861 3.9949 33 1 5.8253 -9.9867 3.6580 34 1 7.2661 -7.9859 3.7475 35 1 6.9150 -7.4082 6.1699 36 1 5.3543 -8.2620 6.1103 37 1 7.1220 -9.6900 6.8457 38 1 6.3162 -5.7977 4.3773 39 1 4.6824 -6.5035 4.4212 40 1 6.5029 -6.3603 1.9748 41 1 5.0756 -5.3395 2.2725 42 1 1.6953 -6.8458 0.4265 43 1 0.3579 -4.7882 0.2409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264067486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:23 Heat of formation + Delta-G solvation = -82.308448 kcal Electronic energy + Delta-G solvation = -22889.930808 eV Core-core repulsion = 19513.205685 eV Total energy + Delta-G solvation = -3376.725123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.91 seconds Orbital eigenvalues (eV) -40.94069 -40.11902 -38.45996 -37.43611 -34.84271 -34.17678 -32.02153 -31.61776 -31.14855 -28.22456 -27.30318 -25.27825 -24.17553 -23.46905 -22.67840 -21.75844 -20.63622 -19.81780 -18.79909 -18.16810 -16.95256 -16.54974 -16.45040 -16.22701 -15.93838 -15.66050 -15.48553 -15.30037 -15.11262 -14.69753 -14.41031 -14.23039 -14.00240 -13.80841 -13.60099 -13.24663 -13.07858 -12.90735 -12.59363 -12.35372 -12.25118 -12.18931 -12.12216 -12.04650 -11.60684 -11.27387 -11.24171 -11.15114 -10.80228 -10.77561 -9.74089 -9.22140 -8.86169 -8.46400 -6.14451 0.62061 0.69793 1.34881 1.44148 1.52480 2.18115 2.75315 3.04815 3.33289 3.33742 3.54551 3.81091 3.86846 3.99163 4.06264 4.18750 4.22510 4.34066 4.41678 4.47054 4.49264 4.58524 4.62931 4.64659 4.71442 4.76321 4.81231 4.89885 4.95649 5.01557 5.10033 5.11288 5.16755 5.22185 5.28304 5.32731 5.48573 5.59989 5.72884 5.83078 6.04009 6.17133 6.23446 6.30951 6.92698 6.98422 7.80167 8.77080 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023304 B = 0.003086 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.216326 B = 9071.440583 C = 9724.481466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.114 3.886 11 C -0.242 4.242 12 C -0.061 4.061 13 C -0.151 4.151 14 C 0.115 3.885 15 N -0.543 5.543 16 C 0.056 3.944 17 C -0.100 4.100 18 C -0.086 4.086 19 C 0.082 3.918 20 O -0.591 6.591 21 C -0.106 4.106 22 C 0.053 3.947 23 C -0.047 4.047 24 C -0.205 4.205 25 H 0.272 0.728 26 H 0.117 0.883 27 H 0.132 0.868 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.396 0.604 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.066 0.934 42 H 0.144 0.856 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.879 -16.996 8.559 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.064 3.936 11 C -0.261 4.261 12 C -0.080 4.080 13 C -0.152 4.152 14 C -0.012 4.012 15 N -0.268 5.268 16 C -0.071 4.071 17 C -0.138 4.138 18 C -0.105 4.105 19 C 0.005 3.995 20 O -0.399 6.399 21 C -0.144 4.144 22 C -0.075 4.075 23 C -0.066 4.066 24 C -0.225 4.225 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.150 0.850 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.245 0.755 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.162 0.838 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.060 -16.829 8.146 23.393 hybrid contribution 0.555 1.167 0.065 1.294 sum 14.615 -15.662 8.211 22.941 Atomic orbital electron populations 1.70181 1.08043 1.28772 1.49041 1.26584 0.96839 1.02731 0.95924 0.84596 0.77819 0.74601 0.79253 1.18804 1.19587 1.17642 1.21806 0.92468 0.81481 1.53108 0.88187 1.83942 1.35969 1.12602 1.81518 1.19925 0.91592 0.87909 0.94181 1.21196 0.93058 0.99885 1.11975 1.20889 0.99314 0.91123 0.96633 1.19566 0.93616 0.94619 1.07445 1.20803 0.97532 0.94606 0.88245 1.61927 1.46763 1.02482 1.15640 1.22134 0.97779 0.90062 0.97138 1.21506 0.99586 0.98480 0.94254 1.21158 0.99332 0.95086 0.94901 1.22194 0.96069 0.85693 0.95573 1.86416 1.80761 1.40098 1.32661 1.21523 1.01294 0.96233 0.95329 1.22100 0.94528 0.95710 0.95116 1.20823 0.93337 0.96739 0.95671 1.20461 0.99878 0.90644 1.11485 0.91860 0.86526 0.85000 0.93786 0.88914 0.89819 0.94884 0.91913 0.90843 0.91477 0.92782 0.93127 0.75479 0.90538 0.91777 0.94704 0.91539 0.83789 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.20 13.67 21.61 0.30 -56.91 16 2 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 3 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.41 -24.29 9.49 67.92 0.64 -23.64 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 9 O -0.23 -14.27 9.76 -22.71 -0.22 -14.49 16 10 C 0.11 5.77 6.65 22.58 0.15 5.92 16 11 C -0.24 -10.62 9.17 22.39 0.21 -10.42 16 12 C -0.06 -2.11 7.86 22.25 0.18 -1.94 16 13 C -0.15 -4.75 4.89 -19.83 -0.10 -4.85 16 14 C 0.11 2.73 5.12 85.56 0.44 3.16 16 15 N -0.54 -12.56 4.65 -900.94 -4.19 -16.75 16 16 C 0.06 1.06 5.46 86.33 0.47 1.53 16 17 C -0.10 -1.83 5.25 30.65 0.16 -1.66 16 18 C -0.09 -1.53 2.49 -10.72 -0.03 -1.56 16 19 C 0.08 1.22 6.43 71.98 0.46 1.69 16 20 O -0.59 -8.93 13.26 -148.98 -1.98 -10.90 16 21 C -0.11 -2.10 5.38 30.65 0.16 -1.93 16 22 C 0.05 1.23 5.15 86.33 0.44 1.68 16 23 C -0.05 -1.62 9.69 22.25 0.22 -1.40 16 24 C -0.21 -8.92 9.99 22.39 0.22 -8.70 16 25 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 26 H 0.12 5.22 5.64 -2.91 -0.02 5.21 16 27 H 0.13 3.77 7.95 -2.91 -0.02 3.75 16 28 H 0.04 0.97 8.07 -2.39 -0.02 0.95 16 29 H 0.09 1.91 7.93 -2.38 -0.02 1.89 16 30 H 0.08 1.41 8.01 -2.39 -0.02 1.39 16 31 H 0.03 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.30 7.91 -2.39 -0.02 1.28 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.40 2.40 9.12 -74.06 -0.68 1.72 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 1.83 5.75 -2.39 -0.01 1.82 16 42 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -72.01 345.86 0.37 -71.64 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.33 Total: 25.24 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 4.10 Total: -43.01 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -3.89 Total: -73.65 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -2.20 Total: -25.40 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -72.01 0.37 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264067486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.667 kcal (2) G-P(sol) polarization free energy of solvation -72.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.91 seconds