Wall clock time and date at job start Tue Mar 31 2020 07:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86804 * 120.00348 * 2 1 4 4 H 1.48498 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47181 * 299.99826 * 3 2 1 6 6 H 1.48502 * 109.46653 * 59.99931 * 3 2 1 7 7 C 1.38655 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00424 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00355 * 185.05801 * 9 7 2 11 11 C 1.38884 * 120.06772 * 174.42257 * 10 9 7 12 12 C 1.38100 * 119.92699 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06920 * 359.97438 * 12 11 10 14 14 C 1.50709 * 119.92772 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.46776 * 90.00127 * 14 13 12 16 16 C 1.46847 * 110.99974 * 299.15439 * 15 14 13 17 17 C 1.53046 * 109.52040 * 174.16289 * 16 15 14 18 18 C 1.53117 * 109.27918 * 59.17993 * 17 16 15 19 19 C 1.53121 * 109.15915 * 302.34514 * 18 17 16 20 20 C 1.46850 * 110.99822 * 174.94496 * 15 14 13 21 21 H 1.08997 * 109.46081 * 65.83141 * 20 15 14 22 22 C 1.53004 * 109.46110 * 305.85222 * 20 15 14 23 23 O 1.42895 * 109.47539 * 296.49848 * 22 20 15 24 24 C 1.38295 * 120.14002 * 0.02562 * 13 12 11 25 25 C 1.38092 * 120.07044 * 0.02562 * 24 13 12 26 26 H 0.97005 * 119.99898 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.03300 * 0.02562 * 11 10 9 28 28 H 1.08004 * 119.95906 * 180.25726 * 12 11 10 29 29 H 1.08999 * 109.47118 * 209.99925 * 14 13 12 30 30 H 1.08997 * 109.47250 * 330.00034 * 14 13 12 31 31 H 1.08998 * 109.46270 * 294.17526 * 16 15 14 32 32 H 1.09001 * 109.46358 * 54.14521 * 16 15 14 33 33 H 1.09000 * 109.50012 * 299.23717 * 17 16 15 34 34 H 1.08997 * 109.53350 * 179.13986 * 17 16 15 35 35 H 1.08997 * 109.52149 * 182.44254 * 18 17 16 36 36 H 1.09004 * 109.52423 * 62.24631 * 18 17 16 37 37 H 1.09005 * 109.50371 * 297.71307 * 19 18 17 38 38 H 1.09002 * 109.53408 * 177.61805 * 19 18 17 39 39 H 1.09006 * 109.46598 * 56.49606 * 22 20 15 40 40 H 1.08997 * 109.47044 * 176.49190 * 22 20 15 41 41 H 0.96701 * 114.00407 * 180.02562 * 23 22 20 42 42 H 1.08006 * 119.96618 * 179.97438 * 24 13 12 43 43 H 1.08005 * 120.03992 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3462 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 1.4364 -4.7345 0.2287 12 6 2.1873 -5.8885 0.3369 13 6 3.5685 -5.8204 0.3223 14 6 4.3848 -7.0817 0.4413 15 7 4.6420 -7.6265 -0.8985 16 6 3.3855 -7.9612 -1.5807 17 6 3.6829 -8.3869 -3.0204 18 6 4.6166 -9.6004 -3.0061 19 6 5.8972 -9.2402 -2.2480 20 6 5.5357 -8.7898 -0.8308 21 1 5.0333 -9.6038 -0.3082 22 6 6.8111 -8.4096 -0.0758 23 8 7.5117 -7.3986 -0.8031 24 6 4.2022 -4.5973 0.1999 25 6 3.4571 -3.4396 0.0923 26 1 -0.4850 0.8401 -0.0004 27 1 0.3579 -4.7882 0.2397 28 1 1.6952 -6.8455 0.4285 29 1 5.3326 -6.8563 0.9300 30 1 3.8364 -7.8150 1.0326 31 1 2.8932 -8.7791 -1.0545 32 1 2.7323 -7.0887 -1.5875 33 1 4.1627 -7.5647 -3.5512 34 1 2.7518 -8.6501 -3.5223 35 1 4.8657 -9.8803 -4.0297 36 1 4.1218 -10.4350 -2.5094 37 1 6.4119 -8.4314 -2.7667 38 1 6.5486 -10.1127 -2.1975 39 1 6.5491 -8.0309 0.9122 40 1 7.4470 -9.2886 0.0289 41 1 8.3327 -7.1088 -0.3822 42 1 5.2811 -4.5473 0.1892 43 1 3.9525 -2.4847 -0.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264542015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:47 Heat of formation + Delta-G solvation = -51.430920 kcal Electronic energy + Delta-G solvation = -23425.148169 eV Core-core repulsion = 20049.761996 eV Total energy + Delta-G solvation = -3375.386173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.74558 -38.74411 -36.69217 -36.19644 -33.61099 -32.21964 -31.48123 -30.14719 -29.37754 -26.49787 -25.79792 -24.86272 -22.83740 -21.86431 -21.34126 -20.23346 -19.59715 -17.92923 -17.39740 -16.89092 -16.06337 -15.70144 -14.74458 -14.62359 -14.44312 -14.23607 -14.09214 -13.69050 -13.56484 -13.43472 -13.20916 -13.05858 -12.71002 -12.59108 -12.44801 -11.76407 -11.60648 -11.47488 -11.25261 -11.16621 -10.87840 -10.75422 -10.62005 -10.55703 -10.39678 -10.29969 -10.14501 -9.86710 -9.27486 -8.79926 -8.13173 -8.05029 -7.11401 -6.41925 -4.00362 2.26347 2.34943 3.14455 3.16184 3.21833 3.96635 3.99883 4.22897 4.64518 4.69920 4.80271 4.92408 5.08508 5.13563 5.23302 5.27071 5.30961 5.32913 5.41116 5.45343 5.58831 5.60180 5.72607 5.81726 5.85130 5.88273 5.93522 5.98269 6.00226 6.22383 6.26842 6.27712 6.43406 6.49496 6.75326 6.96549 7.10040 7.20879 7.28896 7.36566 7.48264 7.50589 7.61550 7.88430 8.03840 9.04200 9.75061 10.76365 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024665 B = 0.003434 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.946968 B = 8150.682441 C = 8577.720302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.194 4.194 12 C -0.070 4.070 13 C -0.177 4.177 14 C 0.110 3.890 15 N -0.516 5.516 16 C 0.053 3.947 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.106 4.106 20 C 0.085 3.915 21 H 0.045 0.955 22 C 0.079 3.921 23 O -0.551 6.551 24 C -0.047 4.047 25 C -0.235 4.235 26 H 0.269 0.731 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.024 0.976 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.371 0.629 42 H 0.107 0.893 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.879 -17.603 -0.979 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.083 6.083 10 C 0.102 3.898 11 C -0.213 4.213 12 C -0.089 4.089 13 C -0.178 4.178 14 C -0.016 4.016 15 N -0.241 5.241 16 C -0.075 4.075 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.144 4.144 20 C -0.023 4.023 21 H 0.063 0.937 22 C 0.001 3.999 23 O -0.355 6.355 24 C -0.065 4.065 25 C -0.254 4.254 26 H 0.079 0.921 27 H 0.133 0.867 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.217 0.783 42 H 0.125 0.875 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.172 -17.107 -1.683 20.501 hybrid contribution 0.502 0.227 0.915 1.068 sum 11.674 -16.880 -0.768 20.538 Atomic orbital electron populations 1.70050 1.05954 1.27481 1.46430 1.25283 0.95831 0.98810 0.96632 0.85654 0.79185 0.80428 0.78212 1.19076 1.20159 1.20186 1.21383 0.91841 0.80834 1.52588 0.89013 1.83973 1.34388 1.11475 1.78483 1.19389 0.90318 0.87995 0.92123 1.20153 0.99400 0.90378 1.11417 1.20477 0.93023 0.96457 0.98931 1.19047 0.92981 0.93703 1.12102 1.20875 0.98432 0.93563 0.88749 1.61925 1.13862 1.29401 1.18920 1.22175 0.91400 1.00020 0.93911 1.21584 0.99135 0.98045 0.96715 1.21597 0.96363 0.97801 1.00093 1.21502 0.97164 1.00823 0.94864 1.21686 0.92325 0.91633 0.96666 0.93718 1.22287 0.92803 0.90405 0.94386 1.86643 1.39797 1.58151 1.50925 1.20557 0.98370 0.91485 0.96118 1.21161 0.93749 0.98956 1.11569 0.92133 0.86698 0.87622 0.90581 0.95546 0.95788 0.89277 0.90969 0.91879 0.92070 0.92741 0.90045 0.92347 0.93378 0.93898 0.78347 0.87468 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.61 13.67 55.48 0.76 -24.86 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.21 9.76 0.05 0.00 -5.21 16 10 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 11 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16 12 C -0.07 -1.27 7.75 -39.61 -0.31 -1.57 16 13 C -0.18 -3.10 4.73 -104.57 -0.49 -3.59 16 14 C 0.11 1.57 4.76 -4.97 -0.02 1.55 16 15 N -0.52 -7.09 4.45 -228.11 -1.01 -8.11 16 16 C 0.05 0.71 5.03 -3.83 -0.02 0.69 16 17 C -0.12 -1.39 6.09 -26.65 -0.16 -1.55 16 18 C -0.12 -1.23 6.00 -26.61 -0.16 -1.39 16 19 C -0.11 -1.13 5.20 -26.65 -0.14 -1.26 16 20 C 0.09 0.96 2.23 -67.72 -0.15 0.81 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 C 0.08 0.78 6.25 37.16 0.23 1.01 16 23 O -0.55 -6.04 12.75 -35.23 -0.45 -6.49 16 24 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 25 C -0.24 -5.25 9.17 -39.40 -0.36 -5.61 16 26 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 27 H 0.11 2.39 8.06 -52.49 -0.42 1.96 16 28 H 0.11 1.63 8.01 -52.48 -0.42 1.21 16 29 H 0.08 1.02 5.78 -51.93 -0.30 0.72 16 30 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 1.39 5.67 -51.93 -0.29 1.09 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 1.03 7.57 -51.93 -0.39 0.63 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.46 6.01 -51.93 -0.31 0.14 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.37 2.43 9.12 45.56 0.42 2.85 16 42 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 43 H 0.13 2.82 5.64 -52.48 -0.30 2.52 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -31.92 340.69 -8.68 -40.59 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.66 Total: 6.17 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -2.43 Total: -23.00 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: -0.26 Total: -32.96 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.45 Total: -11.71 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.92 -8.68 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264542015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.837 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds