Wall clock time and date at job start Tue Mar 31 2020 07:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86804 * 120.00348 * 2 1 4 4 H 1.48498 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47181 * 299.99826 * 3 2 1 6 6 H 1.48502 * 109.46653 * 59.99931 * 3 2 1 7 7 C 1.38655 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00424 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00355 * 185.05801 * 9 7 2 11 11 C 1.38884 * 120.06772 * 174.42257 * 10 9 7 12 12 C 1.38100 * 119.92699 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06920 * 359.97438 * 12 11 10 14 14 C 1.50709 * 119.92772 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.46776 * 90.00127 * 14 13 12 16 16 C 1.46847 * 110.99974 * 299.15439 * 15 14 13 17 17 C 1.53046 * 109.52040 * 174.16289 * 16 15 14 18 18 C 1.53117 * 109.27918 * 59.17993 * 17 16 15 19 19 C 1.53121 * 109.15915 * 302.34514 * 18 17 16 20 20 C 1.46850 * 110.99822 * 174.94496 * 15 14 13 21 21 H 1.08997 * 109.46081 * 65.83141 * 20 15 14 22 22 C 1.53004 * 109.46110 * 305.85222 * 20 15 14 23 23 O 1.42895 * 109.47539 * 296.49848 * 22 20 15 24 24 C 1.38295 * 120.14002 * 0.02562 * 13 12 11 25 25 C 1.38092 * 120.07044 * 0.02562 * 24 13 12 26 26 H 0.97005 * 119.99898 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.03300 * 0.02562 * 11 10 9 28 28 H 1.08004 * 119.95906 * 180.25726 * 12 11 10 29 29 H 1.08999 * 109.47118 * 209.99925 * 14 13 12 30 30 H 1.08997 * 109.47250 * 330.00034 * 14 13 12 31 31 H 1.08998 * 109.46270 * 294.17526 * 16 15 14 32 32 H 1.09001 * 109.46358 * 54.14521 * 16 15 14 33 33 H 1.09000 * 109.50012 * 299.23717 * 17 16 15 34 34 H 1.08997 * 109.53350 * 179.13986 * 17 16 15 35 35 H 1.08997 * 109.52149 * 182.44254 * 18 17 16 36 36 H 1.09004 * 109.52423 * 62.24631 * 18 17 16 37 37 H 1.09005 * 109.50371 * 297.71307 * 19 18 17 38 38 H 1.09002 * 109.53408 * 177.61805 * 19 18 17 39 39 H 1.09006 * 109.46598 * 56.49606 * 22 20 15 40 40 H 1.08997 * 109.47044 * 176.49190 * 22 20 15 41 41 H 0.96701 * 114.00407 * 180.02562 * 23 22 20 42 42 H 1.08006 * 119.96618 * 179.97438 * 24 13 12 43 43 H 1.08005 * 120.03992 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3462 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 1.4364 -4.7345 0.2287 12 6 2.1873 -5.8885 0.3369 13 6 3.5685 -5.8204 0.3223 14 6 4.3848 -7.0817 0.4413 15 7 4.6420 -7.6265 -0.8985 16 6 3.3855 -7.9612 -1.5807 17 6 3.6829 -8.3869 -3.0204 18 6 4.6166 -9.6004 -3.0061 19 6 5.8972 -9.2402 -2.2480 20 6 5.5357 -8.7898 -0.8308 21 1 5.0333 -9.6038 -0.3082 22 6 6.8111 -8.4096 -0.0758 23 8 7.5117 -7.3986 -0.8031 24 6 4.2022 -4.5973 0.1999 25 6 3.4571 -3.4396 0.0923 26 1 -0.4850 0.8401 -0.0004 27 1 0.3579 -4.7882 0.2397 28 1 1.6952 -6.8455 0.4285 29 1 5.3326 -6.8563 0.9300 30 1 3.8364 -7.8150 1.0326 31 1 2.8932 -8.7791 -1.0545 32 1 2.7323 -7.0887 -1.5875 33 1 4.1627 -7.5647 -3.5512 34 1 2.7518 -8.6501 -3.5223 35 1 4.8657 -9.8803 -4.0297 36 1 4.1218 -10.4350 -2.5094 37 1 6.4119 -8.4314 -2.7667 38 1 6.5486 -10.1127 -2.1975 39 1 6.5491 -8.0309 0.9122 40 1 7.4470 -9.2886 0.0289 41 1 8.3327 -7.1088 -0.3822 42 1 5.2811 -4.5473 0.1892 43 1 3.9525 -2.4847 -0.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264542015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:45 Heat of formation + Delta-G solvation = -74.164473 kcal Electronic energy + Delta-G solvation = -23426.133970 eV Core-core repulsion = 20049.761996 eV Total energy + Delta-G solvation = -3376.371974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -41.03100 -40.22185 -38.27415 -37.08572 -34.81760 -34.13986 -32.41569 -31.79673 -30.82240 -27.79037 -27.15719 -26.30449 -24.06838 -23.46802 -22.30531 -21.70157 -20.50710 -19.81844 -18.82029 -18.14328 -17.00771 -16.83688 -16.45855 -16.19598 -15.72635 -15.47871 -15.40016 -15.03972 -14.96507 -14.81441 -14.35761 -14.13431 -14.01604 -13.98862 -13.62790 -13.48192 -12.95998 -12.77867 -12.46518 -12.38906 -12.29178 -12.16018 -12.09538 -12.04208 -11.57344 -11.20186 -11.17210 -11.07625 -10.80152 -10.61815 -9.74707 -9.13626 -8.84170 -8.47108 -6.15051 0.60608 0.69056 1.34900 1.43133 1.53418 2.17981 2.73487 3.02692 3.30041 3.51852 3.54672 3.86466 3.95244 3.99928 4.06713 4.10128 4.20464 4.32602 4.43023 4.46795 4.50759 4.55033 4.60680 4.68665 4.74196 4.77678 4.85664 4.94765 4.97227 5.07872 5.09582 5.12594 5.16915 5.30270 5.30814 5.35291 5.56398 5.58161 5.72807 5.83890 6.03629 6.20159 6.26020 6.36528 6.97871 7.07239 7.78949 8.76479 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024665 B = 0.003434 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.946968 B = 8150.682441 C = 8577.720302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.114 3.886 11 C -0.204 4.204 12 C -0.059 4.059 13 C -0.151 4.151 14 C 0.113 3.887 15 N -0.532 5.532 16 C 0.052 3.948 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.102 4.102 20 C 0.080 3.920 21 H 0.060 0.940 22 C 0.078 3.922 23 O -0.577 6.577 24 C -0.048 4.048 25 C -0.243 4.243 26 H 0.273 0.727 27 H 0.112 0.888 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.388 0.612 42 H 0.132 0.868 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.403 -20.283 -0.535 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.064 3.936 11 C -0.223 4.223 12 C -0.077 4.077 13 C -0.152 4.152 14 C -0.013 4.013 15 N -0.258 5.258 16 C -0.076 4.076 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.027 4.027 21 H 0.077 0.923 22 C 0.000 4.000 23 O -0.384 6.384 24 C -0.067 4.067 25 C -0.263 4.263 26 H 0.082 0.918 27 H 0.130 0.870 28 H 0.159 0.841 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.236 0.764 42 H 0.150 0.850 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.741 -19.846 -1.233 24.170 hybrid contribution -0.155 0.693 0.768 1.046 sum 13.586 -19.154 -0.465 23.487 Atomic orbital electron populations 1.70190 1.08006 1.28708 1.49047 1.26584 0.96861 1.02693 0.95876 0.84532 0.78210 0.74845 0.78628 1.17570 1.19284 1.19195 1.21855 0.92476 0.81498 1.53105 0.88274 1.83935 1.35943 1.12595 1.81534 1.19916 0.91520 0.87962 0.94196 1.20408 0.99822 0.90567 1.11535 1.20829 0.93349 0.96570 0.96964 1.19557 0.93166 0.94856 1.07630 1.20879 0.98676 0.92035 0.89749 1.61854 1.14244 1.31365 1.18302 1.22144 0.91161 0.99295 0.95017 1.21569 0.99958 0.98254 0.95671 1.21578 0.95792 0.97117 1.00929 1.21470 0.97412 1.00762 0.94350 1.21850 0.92521 0.90955 0.97415 0.92258 1.22351 0.92516 0.91188 0.93906 1.86595 1.41061 1.58705 1.52003 1.20841 0.99481 0.90963 0.95397 1.21230 0.93119 0.99924 1.11987 0.91842 0.86950 0.84102 0.89188 0.93644 0.94345 0.91986 0.93162 0.90955 0.91121 0.91366 0.92439 0.90266 0.92977 0.91452 0.76355 0.85046 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.50 13.67 21.61 0.30 -57.21 16 2 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 3 Si 1.02 43.80 29.55 68.60 2.03 45.83 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.41 -24.73 9.49 67.92 0.64 -24.09 16 8 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 9 O -0.23 -14.45 9.76 -22.74 -0.22 -14.67 16 10 C 0.11 5.89 6.65 22.58 0.15 6.04 16 11 C -0.20 -8.95 9.99 22.39 0.22 -8.72 16 12 C -0.06 -2.02 7.75 22.25 0.17 -1.85 16 13 C -0.15 -4.93 4.73 -19.83 -0.09 -5.02 16 14 C 0.11 2.79 4.76 85.56 0.41 3.19 16 15 N -0.53 -12.94 4.45 -875.61 -3.90 -16.83 16 16 C 0.05 1.26 5.03 86.33 0.43 1.69 16 17 C -0.12 -2.56 6.09 30.65 0.19 -2.37 16 18 C -0.12 -2.01 6.00 30.67 0.18 -1.82 16 19 C -0.10 -1.84 5.20 30.65 0.16 -1.68 16 20 C 0.08 1.50 2.23 44.94 0.10 1.60 16 21 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 22 C 0.08 1.21 6.25 71.98 0.45 1.66 16 23 O -0.58 -10.93 12.75 -148.98 -1.90 -12.83 16 24 C -0.05 -1.79 9.69 22.25 0.22 -1.57 16 25 C -0.24 -11.13 9.17 22.39 0.21 -10.93 16 26 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 27 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 28 H 0.14 3.88 8.01 -2.91 -0.02 3.86 16 29 H 0.09 2.03 5.78 -2.39 -0.01 2.01 16 30 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.83 5.67 -2.39 -0.01 1.81 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.06 1.33 7.57 -2.38 -0.02 1.31 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 0.76 6.01 -2.38 -0.01 0.74 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.39 3.98 9.12 -74.06 -0.68 3.31 16 42 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 43 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 Total: -1.00 -73.96 340.69 0.55 -73.41 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.34 Total: 27.04 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 3.91 Total: -44.73 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -3.60 Total: -74.04 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -2.12 Total: -27.50 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -73.96 0.55 -73.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264542015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.753 kcal (2) G-P(sol) polarization free energy of solvation -73.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds