Wall clock time and date at job start Tue Mar 31 2020 07:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48495 * 109.47217 * 269.99782 * 3 2 1 5 5 H 1.48499 * 109.47272 * 29.99794 * 3 2 1 6 6 H 1.48505 * 109.47096 * 149.99830 * 3 2 1 7 7 C 1.38656 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00255 * 179.97438 * 7 2 1 9 9 O 1.34837 * 119.99581 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99671 * 174.54561 * 9 7 2 11 11 C 1.38878 * 120.06922 * 354.08054 * 10 9 7 12 12 C 1.38102 * 119.93143 * 180.25937 * 11 10 9 13 13 C 1.38301 * 120.06462 * 359.42058 * 12 11 10 14 14 C 1.50700 * 119.93180 * 180.28340 * 13 12 11 15 15 N 1.46906 * 109.46837 * 270.32404 * 14 13 12 16 16 C 1.46841 * 111.00485 * 74.06082 * 15 14 13 17 17 C 1.53031 * 109.52725 * 185.84108 * 16 15 14 18 18 C 1.53127 * 109.27557 * 300.82075 * 17 16 15 19 19 C 1.53123 * 109.15858 * 57.65406 * 18 17 16 20 20 C 1.46846 * 110.99976 * 198.27469 * 15 14 13 21 21 H 1.08999 * 109.46311 * 294.17493 * 20 15 14 22 22 C 1.53003 * 109.46149 * 54.13932 * 20 15 14 23 23 O 1.42896 * 109.47103 * 62.81934 * 22 20 15 24 24 C 1.38298 * 120.13831 * 0.60115 * 13 12 11 25 25 C 1.38097 * 120.07068 * 359.67950 * 24 13 12 26 26 H 0.97006 * 119.99406 * 0.02562 * 1 2 3 27 27 H 1.08007 * 120.03629 * 359.97438 * 11 10 9 28 28 H 1.08001 * 119.96395 * 179.70147 * 12 11 10 29 29 H 1.08999 * 109.46992 * 30.31377 * 14 13 12 30 30 H 1.08994 * 109.47283 * 150.31780 * 14 13 12 31 31 H 1.08999 * 109.46202 * 305.86128 * 16 15 14 32 32 H 1.09004 * 109.45960 * 65.82010 * 16 15 14 33 33 H 1.08997 * 109.50339 * 60.75983 * 17 16 15 34 34 H 1.08997 * 109.50745 * 180.88139 * 17 16 15 35 35 H 1.09000 * 109.52281 * 177.55432 * 18 17 16 36 36 H 1.08995 * 109.52502 * 297.68570 * 18 17 16 37 37 H 1.09000 * 109.50286 * 62.28555 * 19 18 17 38 38 H 1.08998 * 109.50078 * 182.35859 * 19 18 17 39 39 H 1.09001 * 109.46636 * 182.81862 * 22 20 15 40 40 H 1.08998 * 109.47203 * 302.82092 * 22 20 15 41 41 H 0.96706 * 114.00099 * 179.97438 * 23 22 20 42 42 H 1.08006 * 119.96667 * 179.69771 * 24 13 12 43 43 H 1.07998 * 120.03669 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3345 -2.3685 0.0005 10 6 2.0692 -3.5043 -0.1139 11 6 3.4361 -3.4284 -0.3473 12 6 4.1798 -4.5857 -0.4686 13 6 3.5667 -5.8193 -0.3459 14 6 4.3822 -7.0802 -0.4724 15 7 4.4153 -7.5029 -1.8790 16 6 5.3004 -6.6367 -2.6681 17 6 5.1982 -7.0133 -4.1479 18 6 5.5986 -8.4806 -4.3249 19 6 4.6929 -9.3571 -3.4554 20 6 4.8098 -8.9125 -1.9958 21 1 5.8406 -9.0301 -1.6617 22 6 3.8910 -9.7727 -1.1257 23 8 2.5484 -9.6696 -1.6040 24 6 2.2056 -5.8983 -0.1139 25 6 1.4555 -4.7446 0.0026 26 1 -0.4849 0.8401 -0.0004 27 1 3.9163 -2.4652 -0.4385 28 1 5.2420 -4.5273 -0.6549 29 1 5.3983 -6.8921 -0.1257 30 1 3.9315 -7.8667 0.1328 31 1 5.0023 -5.5966 -2.5366 32 1 6.3290 -6.7649 -2.3309 33 1 4.1727 -6.8722 -4.4893 34 1 5.8669 -6.3806 -4.7314 35 1 5.4857 -8.7654 -5.3710 36 1 6.6368 -8.6141 -4.0210 37 1 3.6595 -9.2529 -3.7859 38 1 5.0002 -10.3991 -3.5449 39 1 4.2148 -10.8125 -1.1730 40 1 3.9369 -9.4244 -0.0939 41 1 1.9097 -10.1909 -1.0985 42 1 1.7288 -6.8631 -0.0234 43 1 0.3925 -4.8069 0.1833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264542019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:58 Heat of formation + Delta-G solvation = -50.263127 kcal Electronic energy + Delta-G solvation = -23438.793852 eV Core-core repulsion = 20063.458319 eV Total energy + Delta-G solvation = -3375.335533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -39.71450 -38.72967 -36.62156 -36.21746 -33.61634 -32.20667 -31.49149 -30.06341 -29.46264 -26.47339 -25.71700 -24.93999 -22.78649 -21.87473 -21.34595 -20.20412 -19.62982 -17.91218 -17.38575 -16.87722 -16.06635 -15.62755 -14.90682 -14.63308 -14.44424 -14.16920 -14.10255 -13.76891 -13.53285 -13.28556 -13.18820 -13.03262 -12.84715 -12.59809 -12.22472 -11.81257 -11.61366 -11.45543 -11.24806 -11.16905 -10.88740 -10.76183 -10.64830 -10.55244 -10.36690 -10.29121 -10.16380 -9.81801 -9.29029 -8.78025 -8.11434 -8.03507 -7.09065 -6.40442 -3.99006 2.30839 2.37693 3.15158 3.15955 3.20703 3.96100 4.00483 4.24308 4.65881 4.69469 4.80965 4.90212 5.02993 5.16133 5.23866 5.26997 5.32138 5.35051 5.43084 5.44209 5.55813 5.59495 5.70995 5.80048 5.84644 5.88938 5.93425 5.95540 6.02576 6.21203 6.22680 6.30310 6.43179 6.51640 6.79864 6.98760 7.10426 7.25623 7.27312 7.37071 7.49748 7.52284 7.63886 7.92095 8.04933 9.05452 9.77340 10.77896 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.003468 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.616687 B = 8070.915446 C = 8648.671073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.090 0.910 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.234 4.234 12 C -0.068 4.068 13 C -0.171 4.171 14 C 0.107 3.893 15 N -0.515 5.515 16 C 0.054 3.946 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.106 4.106 20 C 0.085 3.915 21 H 0.044 0.956 22 C 0.079 3.921 23 O -0.550 6.550 24 C -0.049 4.049 25 C -0.195 4.195 26 H 0.269 0.731 27 H 0.124 0.876 28 H 0.101 0.899 29 H 0.029 0.971 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.024 0.976 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.371 0.629 42 H 0.111 0.889 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.810 -17.984 -3.640 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.254 4.254 12 C -0.086 4.086 13 C -0.172 4.172 14 C -0.020 4.020 15 N -0.240 5.240 16 C -0.073 4.073 17 C -0.155 4.155 18 C -0.158 4.158 19 C -0.144 4.144 20 C -0.023 4.023 21 H 0.062 0.938 22 C 0.000 4.000 23 O -0.354 6.354 24 C -0.068 4.068 25 C -0.214 4.214 26 H 0.079 0.921 27 H 0.142 0.858 28 H 0.119 0.881 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.217 0.783 42 H 0.129 0.871 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.204 -17.324 -4.238 20.548 hybrid contribution 1.161 0.437 0.701 1.425 sum 11.365 -16.887 -3.537 20.661 Atomic orbital electron populations 1.70044 1.05933 1.27548 1.46373 1.25272 0.95823 0.98771 0.96678 0.85734 0.78925 0.80225 0.78673 1.19920 1.20286 1.19248 1.21303 0.91718 0.80937 1.52715 0.89214 1.83998 1.34245 1.11462 1.78652 1.19403 0.90347 0.87974 0.92152 1.21105 0.94381 0.98651 1.11214 1.20576 0.97949 0.91974 0.98131 1.19039 0.94244 0.92955 1.10998 1.20929 0.97095 0.95629 0.88319 1.61891 1.51548 1.00513 1.10060 1.22141 0.93404 0.98522 0.93270 1.21578 1.02397 0.95652 0.95842 1.21593 0.98843 0.95758 0.99637 1.21503 1.01597 0.97806 0.93469 1.21677 0.95187 0.89175 0.96270 0.93787 1.22325 0.83636 0.97332 0.96670 1.86655 1.16958 1.72978 1.58770 1.20429 0.92776 0.96570 0.97024 1.20207 0.99847 0.90116 1.11230 0.92094 0.85783 0.88108 0.95313 0.90530 0.89737 0.95772 0.90872 0.91911 0.92052 0.92761 0.89995 0.92335 0.93898 0.93270 0.78338 0.87127 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.72 13.67 55.48 0.76 -24.96 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -11.11 9.44 30.89 0.29 -10.82 16 8 H 0.09 2.37 5.30 -52.49 -0.28 2.09 16 9 O -0.18 -5.26 9.76 0.01 0.00 -5.26 16 10 C 0.15 3.84 6.65 -39.11 -0.26 3.58 16 11 C -0.23 -5.21 9.13 -39.39 -0.36 -5.57 16 12 C -0.07 -1.27 8.18 -39.61 -0.32 -1.59 16 13 C -0.17 -3.01 5.12 -104.58 -0.53 -3.55 16 14 C 0.11 1.51 4.96 -4.97 -0.02 1.49 16 15 N -0.52 -7.05 4.34 -228.13 -0.99 -8.04 16 16 C 0.05 0.72 5.25 -3.84 -0.02 0.70 16 17 C -0.12 -1.37 6.09 -26.65 -0.16 -1.54 16 18 C -0.12 -1.21 6.00 -26.60 -0.16 -1.37 16 19 C -0.11 -1.12 5.21 -26.65 -0.14 -1.26 16 20 C 0.09 0.96 2.23 -67.73 -0.15 0.80 16 21 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 22 C 0.08 0.76 6.29 37.16 0.23 1.00 16 23 O -0.55 -6.08 12.77 -35.23 -0.45 -6.53 16 24 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 25 C -0.19 -4.27 9.99 -39.40 -0.39 -4.66 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.12 2.77 5.72 -52.48 -0.30 2.47 16 28 H 0.10 1.64 7.76 -52.49 -0.41 1.24 16 29 H 0.03 0.39 7.97 -51.93 -0.41 -0.03 16 30 H 0.08 0.99 5.20 -51.93 -0.27 0.72 16 31 H 0.08 1.27 5.94 -51.93 -0.31 0.97 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 1.04 7.59 -51.93 -0.39 0.64 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.46 5.80 -51.93 -0.30 0.16 16 41 H 0.37 2.49 9.12 45.56 0.42 2.90 16 42 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 43 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -32.22 341.10 -8.67 -40.89 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.62 Total: 6.10 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -2.48 Total: -23.12 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: -0.23 Total: -33.01 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.45 Total: -11.79 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.22 -8.67 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264542019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.378 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds