Wall clock time and date at job start Tue Mar 31 2020 07:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48495 * 109.47217 * 269.99782 * 3 2 1 5 5 H 1.48499 * 109.47272 * 29.99794 * 3 2 1 6 6 H 1.48505 * 109.47096 * 149.99830 * 3 2 1 7 7 C 1.38656 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00255 * 179.97438 * 7 2 1 9 9 O 1.34837 * 119.99581 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99671 * 174.54561 * 9 7 2 11 11 C 1.38878 * 120.06922 * 354.08054 * 10 9 7 12 12 C 1.38102 * 119.93143 * 180.25937 * 11 10 9 13 13 C 1.38301 * 120.06462 * 359.42058 * 12 11 10 14 14 C 1.50700 * 119.93180 * 180.28340 * 13 12 11 15 15 N 1.46906 * 109.46837 * 270.32404 * 14 13 12 16 16 C 1.46841 * 111.00485 * 74.06082 * 15 14 13 17 17 C 1.53031 * 109.52725 * 185.84108 * 16 15 14 18 18 C 1.53127 * 109.27557 * 300.82075 * 17 16 15 19 19 C 1.53123 * 109.15858 * 57.65406 * 18 17 16 20 20 C 1.46846 * 110.99976 * 198.27469 * 15 14 13 21 21 H 1.08999 * 109.46311 * 294.17493 * 20 15 14 22 22 C 1.53003 * 109.46149 * 54.13932 * 20 15 14 23 23 O 1.42896 * 109.47103 * 62.81934 * 22 20 15 24 24 C 1.38298 * 120.13831 * 0.60115 * 13 12 11 25 25 C 1.38097 * 120.07068 * 359.67950 * 24 13 12 26 26 H 0.97006 * 119.99406 * 0.02562 * 1 2 3 27 27 H 1.08007 * 120.03629 * 359.97438 * 11 10 9 28 28 H 1.08001 * 119.96395 * 179.70147 * 12 11 10 29 29 H 1.08999 * 109.46992 * 30.31377 * 14 13 12 30 30 H 1.08994 * 109.47283 * 150.31780 * 14 13 12 31 31 H 1.08999 * 109.46202 * 305.86128 * 16 15 14 32 32 H 1.09004 * 109.45960 * 65.82010 * 16 15 14 33 33 H 1.08997 * 109.50339 * 60.75983 * 17 16 15 34 34 H 1.08997 * 109.50745 * 180.88139 * 17 16 15 35 35 H 1.09000 * 109.52281 * 177.55432 * 18 17 16 36 36 H 1.08995 * 109.52502 * 297.68570 * 18 17 16 37 37 H 1.09000 * 109.50286 * 62.28555 * 19 18 17 38 38 H 1.08998 * 109.50078 * 182.35859 * 19 18 17 39 39 H 1.09001 * 109.46636 * 182.81862 * 22 20 15 40 40 H 1.08998 * 109.47203 * 302.82092 * 22 20 15 41 41 H 0.96706 * 114.00099 * 179.97438 * 23 22 20 42 42 H 1.08006 * 119.96667 * 179.69771 * 24 13 12 43 43 H 1.07998 * 120.03669 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3345 -2.3685 0.0005 10 6 2.0692 -3.5043 -0.1139 11 6 3.4361 -3.4284 -0.3473 12 6 4.1798 -4.5857 -0.4686 13 6 3.5667 -5.8193 -0.3459 14 6 4.3822 -7.0802 -0.4724 15 7 4.4153 -7.5029 -1.8790 16 6 5.3004 -6.6367 -2.6681 17 6 5.1982 -7.0133 -4.1479 18 6 5.5986 -8.4806 -4.3249 19 6 4.6929 -9.3571 -3.4554 20 6 4.8098 -8.9125 -1.9958 21 1 5.8406 -9.0301 -1.6617 22 6 3.8910 -9.7727 -1.1257 23 8 2.5484 -9.6696 -1.6040 24 6 2.2056 -5.8983 -0.1139 25 6 1.4555 -4.7446 0.0026 26 1 -0.4849 0.8401 -0.0004 27 1 3.9163 -2.4652 -0.4385 28 1 5.2420 -4.5273 -0.6549 29 1 5.3983 -6.8921 -0.1257 30 1 3.9315 -7.8667 0.1328 31 1 5.0023 -5.5966 -2.5366 32 1 6.3290 -6.7649 -2.3309 33 1 4.1727 -6.8722 -4.4893 34 1 5.8669 -6.3806 -4.7314 35 1 5.4857 -8.7654 -5.3710 36 1 6.6368 -8.6141 -4.0210 37 1 3.6595 -9.2529 -3.7859 38 1 5.0002 -10.3991 -3.5449 39 1 4.2148 -10.8125 -1.1730 40 1 3.9369 -9.4244 -0.0939 41 1 1.9097 -10.1909 -1.0985 42 1 1.7288 -6.8631 -0.0234 43 1 0.3925 -4.8069 0.1833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264542019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:53 Heat of formation + Delta-G solvation = -73.196397 kcal Electronic energy + Delta-G solvation = -23439.788313 eV Core-core repulsion = 20063.458319 eV Total energy + Delta-G solvation = -3376.329995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.98076 -40.22194 -38.24086 -37.08819 -34.81155 -34.13638 -32.41973 -31.71283 -30.91442 -27.71046 -27.16526 -26.34476 -23.99546 -23.46213 -22.37266 -21.65978 -20.51161 -19.81882 -18.80212 -18.12920 -17.00586 -16.76371 -16.40764 -16.32572 -15.77609 -15.47900 -15.37575 -15.23618 -14.91471 -14.51097 -14.32143 -14.17309 -14.09783 -13.95501 -13.57005 -13.48387 -12.94190 -12.75674 -12.45380 -12.41484 -12.25440 -12.16935 -12.10520 -12.05095 -11.57479 -11.22103 -11.16734 -11.07652 -10.78798 -10.57166 -9.73283 -9.10506 -8.84836 -8.46451 -6.14481 0.63171 0.71722 1.34462 1.44088 1.52239 2.18227 2.74350 3.03027 3.32289 3.53826 3.55917 3.87852 3.95279 3.98438 4.05479 4.10321 4.24907 4.31758 4.42420 4.45969 4.50074 4.54405 4.64030 4.67908 4.75827 4.80380 4.84220 4.94307 4.96585 5.07839 5.11839 5.13646 5.15790 5.30178 5.32461 5.34802 5.56735 5.61534 5.73594 5.84925 6.03877 6.22097 6.28284 6.37312 6.98282 7.08751 7.80424 8.77185 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.003468 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.616687 B = 8070.915446 C = 8648.671073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.113 3.887 11 C -0.242 4.242 12 C -0.063 4.063 13 C -0.146 4.146 14 C 0.109 3.891 15 N -0.533 5.533 16 C 0.053 3.947 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.103 4.103 20 C 0.081 3.919 21 H 0.060 0.940 22 C 0.077 3.923 23 O -0.576 6.576 24 C -0.045 4.045 25 C -0.206 4.206 26 H 0.272 0.728 27 H 0.116 0.884 28 H 0.132 0.868 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.388 0.612 42 H 0.141 0.859 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.875 -20.399 -3.815 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.063 3.937 11 C -0.262 4.262 12 C -0.082 4.082 13 C -0.147 4.147 14 C -0.017 4.017 15 N -0.258 5.258 16 C -0.075 4.075 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.027 4.027 21 H 0.078 0.922 22 C -0.001 4.001 23 O -0.383 6.383 24 C -0.063 4.063 25 C -0.226 4.226 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.150 0.850 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.236 0.764 42 H 0.159 0.841 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.294 -19.809 -4.413 24.261 hybrid contribution 0.306 0.814 0.707 1.121 sum 13.600 -18.995 -3.706 23.654 Atomic orbital electron populations 1.70193 1.08044 1.28754 1.49020 1.26595 0.96857 1.02733 0.95897 0.84589 0.77826 0.74558 0.79239 1.18834 1.19479 1.17646 1.21801 0.92421 0.81538 1.53167 0.88305 1.83954 1.35898 1.12622 1.81656 1.19921 0.91670 0.87848 0.94305 1.21200 0.93658 0.99793 1.11504 1.20897 0.99311 0.91143 0.96815 1.19581 0.94119 0.94408 1.06630 1.20933 0.97334 0.94041 0.89439 1.61783 1.52530 1.02161 1.09354 1.22130 0.94057 0.97186 0.94121 1.21565 1.01310 0.97423 0.95136 1.21576 0.99432 0.94146 1.00252 1.21472 1.00216 0.99110 0.93252 1.21838 0.96417 0.87486 0.96965 0.92211 1.22400 0.82922 0.98458 0.96302 1.86610 1.18039 1.73805 1.59840 1.20775 0.93301 0.96538 0.95704 1.20446 1.00191 0.90403 1.11523 0.91857 0.86590 0.84973 0.93678 0.88667 0.92161 0.94216 0.93259 0.90837 0.91180 0.91293 0.92538 0.90271 0.91443 0.92770 0.76382 0.84147 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.84 13.67 21.61 0.30 -57.54 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 43.76 29.55 68.60 2.03 45.78 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.41 -24.76 9.44 67.92 0.64 -24.12 16 8 H 0.10 5.45 5.30 -2.91 -0.02 5.44 16 9 O -0.23 -14.62 9.76 -22.87 -0.22 -14.85 16 10 C 0.11 5.86 6.65 22.58 0.15 6.01 16 11 C -0.24 -11.00 9.13 22.39 0.20 -10.79 16 12 C -0.06 -2.27 8.18 22.25 0.18 -2.09 16 13 C -0.15 -4.81 5.12 -19.83 -0.10 -4.91 16 14 C 0.11 2.67 4.96 85.56 0.42 3.09 16 15 N -0.53 -12.89 4.34 -875.68 -3.80 -16.69 16 16 C 0.05 1.26 5.25 86.32 0.45 1.71 16 17 C -0.12 -2.51 6.09 30.65 0.19 -2.32 16 18 C -0.12 -1.98 6.00 30.68 0.18 -1.80 16 19 C -0.10 -1.85 5.21 30.64 0.16 -1.69 16 20 C 0.08 1.49 2.23 44.94 0.10 1.59 16 21 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 22 C 0.08 1.19 6.29 71.98 0.45 1.64 16 23 O -0.58 -11.07 12.77 -148.98 -1.90 -12.97 16 24 C -0.04 -1.61 9.69 22.25 0.22 -1.40 16 25 C -0.21 -9.30 9.99 22.39 0.22 -9.07 16 26 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 27 H 0.12 5.35 5.72 -2.91 -0.02 5.34 16 28 H 0.13 3.93 7.76 -2.91 -0.02 3.91 16 29 H 0.05 1.00 7.97 -2.39 -0.02 0.98 16 30 H 0.10 2.03 5.20 -2.39 -0.01 2.02 16 31 H 0.06 1.71 5.94 -2.39 -0.01 1.69 16 32 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.32 7.59 -2.39 -0.02 1.31 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.05 0.77 5.80 -2.39 -0.01 0.76 16 41 H 0.39 4.13 9.12 -74.05 -0.68 3.45 16 42 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 43 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -74.79 341.10 0.68 -74.11 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.34 Total: 27.22 kcal Atomic # 6 Polarization: -49.01 SS G_CDS: 3.94 Total: -45.06 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -3.50 Total: -74.23 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -2.13 Total: -27.82 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -74.79 0.68 -74.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264542019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.910 kcal (2) G-P(sol) polarization free energy of solvation -74.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds