Wall clock time and date at job start Tue Mar 31 2020 07:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86804 * 119.99903 * 2 1 4 4 H 1.48502 * 109.46684 * 269.99762 * 3 2 1 5 5 H 1.48497 * 109.47146 * 29.99538 * 3 2 1 6 6 H 1.48493 * 109.47136 * 149.99760 * 3 2 1 7 7 C 1.38653 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99287 * 180.02562 * 7 2 1 9 9 O 1.34822 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.35761 * 116.99821 * 185.05512 * 9 7 2 11 11 C 1.38877 * 120.06650 * 354.45855 * 10 9 7 12 12 C 1.38096 * 119.92662 * 179.97438 * 11 10 9 13 13 C 1.38296 * 120.07284 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.93404 * 179.97438 * 13 12 11 15 15 N 1.46907 * 109.47056 * 90.00449 * 14 13 12 16 16 C 1.46849 * 110.99383 * 314.20906 * 15 14 13 17 17 C 1.53040 * 109.51671 * 174.16076 * 16 15 14 18 18 C 1.53116 * 109.27786 * 59.18392 * 17 16 15 19 19 C 1.53122 * 109.15944 * 302.34141 * 18 17 16 20 20 H 1.09007 * 109.50103 * 297.71268 * 19 18 17 21 21 C 1.53001 * 109.53347 * 177.61824 * 19 18 17 22 22 O 1.42898 * 109.47360 * 65.10248 * 21 19 18 23 23 C 1.46841 * 110.99770 * 190.00320 * 15 14 13 24 24 C 1.38308 * 120.13642 * 0.28252 * 13 12 11 25 25 C 1.38096 * 120.06755 * 359.48614 * 24 13 12 26 26 H 0.96997 * 119.99951 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.03488 * 359.96285 * 11 10 9 28 28 H 1.08002 * 119.96191 * 180.02562 * 12 11 10 29 29 H 1.08999 * 109.47224 * 330.00159 * 14 13 12 30 30 H 1.09001 * 109.47053 * 210.00373 * 14 13 12 31 31 H 1.09000 * 109.46639 * 294.17365 * 16 15 14 32 32 H 1.08993 * 109.46446 * 54.15846 * 16 15 14 33 33 H 1.09007 * 109.50313 * 179.11812 * 17 16 15 34 34 H 1.08998 * 109.50729 * 299.19674 * 17 16 15 35 35 H 1.09010 * 109.52279 * 182.44001 * 18 17 16 36 36 H 1.08996 * 109.53146 * 62.24816 * 18 17 16 37 37 H 1.09005 * 109.46577 * 185.09590 * 21 19 18 38 38 H 1.09000 * 109.47486 * 305.09463 * 21 19 18 39 39 H 0.96703 * 114.00151 * 179.97438 * 22 21 19 40 40 H 1.08999 * 109.46734 * 65.81912 * 23 15 14 41 41 H 1.08998 * 109.45286 * 305.84607 * 23 15 14 42 42 H 1.07998 * 119.96149 * 179.72085 * 24 13 12 43 43 H 1.07998 * 120.03699 * 180.26311 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4403 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 0.1077 11 6 3.4572 -3.4394 0.0951 12 6 4.2023 -4.5969 0.2047 13 6 3.5686 -5.8200 0.3276 14 6 4.3848 -7.0812 0.4465 15 7 4.6572 -7.3565 1.8636 16 6 5.0943 -6.1404 2.5611 17 6 5.2281 -6.4296 4.0580 18 6 6.2462 -7.5541 4.2666 19 6 5.7921 -8.7935 3.4905 20 1 4.8339 -9.1366 3.8811 21 6 6.8336 -9.9037 3.6448 22 8 6.8906 -10.3168 5.0116 23 6 5.6419 -8.4358 2.0102 24 6 2.1872 -5.8887 0.3351 25 6 1.4365 -4.7343 0.2306 26 1 -0.4850 0.8400 0.0004 27 1 3.9526 -2.4845 -0.0006 28 1 5.2811 -4.5469 0.1954 29 1 5.3270 -6.9559 -0.0870 30 1 3.8307 -7.9146 0.0145 31 1 6.0585 -5.8214 2.1654 32 1 4.3595 -5.3500 2.4084 33 1 5.5676 -5.5311 4.5734 34 1 4.2609 -6.7348 4.4576 35 1 6.3126 -7.7931 5.3281 36 1 7.2224 -7.2339 3.9026 37 1 6.5550 -10.7524 3.0201 38 1 7.8104 -9.5309 3.3368 39 1 7.5314 -11.0204 5.1834 40 1 6.6036 -8.1060 1.6169 41 1 5.3048 -9.3124 1.4571 42 1 1.6953 -6.8458 0.4267 43 1 0.3579 -4.7882 0.2408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265927092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:47 Heat of formation + Delta-G solvation = -58.357064 kcal Electronic energy + Delta-G solvation = -22986.474206 eV Core-core repulsion = 19610.787694 eV Total energy + Delta-G solvation = -3375.686513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.69485 -38.78485 -37.21163 -36.26992 -33.63009 -32.24448 -31.53135 -30.17220 -29.55716 -26.01159 -25.84524 -24.93453 -22.86877 -22.02999 -21.62420 -20.13187 -19.71974 -17.97424 -17.59560 -16.91556 -15.98981 -15.42092 -15.03321 -14.92129 -14.55304 -14.45311 -14.11614 -13.82545 -13.67828 -13.42355 -13.36467 -12.96902 -12.70248 -12.64245 -12.27485 -11.99941 -11.87008 -11.54904 -11.24471 -11.10262 -10.81156 -10.75308 -10.69855 -10.58740 -10.45579 -10.43176 -10.19150 -10.10893 -9.33490 -8.83663 -8.21025 -8.14904 -7.16152 -6.45566 -4.04374 2.21720 2.27073 3.11862 3.13082 3.17888 3.74885 3.96138 4.25452 4.55898 4.67295 4.76469 4.88238 5.08422 5.11116 5.19864 5.25075 5.29161 5.32389 5.37722 5.42534 5.50747 5.53827 5.65607 5.76531 5.79182 5.83343 5.93271 5.99917 6.06331 6.12696 6.21815 6.35139 6.39112 6.44449 6.70706 6.89898 7.02708 7.18824 7.20369 7.29018 7.35553 7.39597 7.44462 7.82459 7.99428 9.00061 9.70375 10.72449 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029046 B = 0.003021 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.767568 B = 9265.923292 C = 9742.191290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.156 3.844 11 C -0.234 4.234 12 C -0.065 4.065 13 C -0.186 4.186 14 C 0.114 3.886 15 N -0.531 5.531 16 C 0.052 3.948 17 C -0.118 4.118 18 C -0.110 4.110 19 C -0.085 4.085 20 H 0.086 0.914 21 C 0.082 3.918 22 O -0.571 6.571 23 C 0.063 3.937 24 C -0.052 4.052 25 C -0.195 4.195 26 H 0.270 0.730 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.377 0.623 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.590 -16.426 5.032 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.083 4.083 13 C -0.187 4.187 14 C -0.012 4.012 15 N -0.256 5.256 16 C -0.075 4.075 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.103 4.103 20 H 0.104 0.896 21 C 0.003 3.997 22 O -0.376 6.376 23 C -0.065 4.065 24 C -0.071 4.071 25 C -0.214 4.214 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.120 0.880 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.223 0.777 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.130 0.870 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.252 -15.890 5.274 20.746 hybrid contribution 1.758 0.693 -0.525 1.961 sum 14.011 -15.197 4.749 21.208 Atomic orbital electron populations 1.70040 1.05955 1.27676 1.46045 1.25289 0.95837 0.98827 0.96559 0.85720 0.78933 0.80126 0.78700 1.19894 1.20230 1.19205 1.21316 0.91770 0.80846 1.52872 0.89108 1.83982 1.34363 1.11471 1.78245 1.19405 0.90252 0.88063 0.92036 1.21112 0.93825 0.98767 1.11667 1.20598 0.97989 0.91947 0.97813 1.19075 0.93720 0.93406 1.12507 1.20807 0.97231 0.95892 0.87299 1.62002 1.43358 1.07435 1.12770 1.22219 0.99139 0.92883 0.93308 1.21615 0.99841 0.98102 0.96062 1.21558 0.98245 0.94510 1.00429 1.21145 0.99238 0.94461 0.95492 0.89578 1.22180 0.98302 0.96542 0.82640 1.86495 1.64961 1.59134 1.27034 1.21968 0.93883 0.95361 0.95320 1.20470 0.92749 0.96754 0.97133 1.20222 0.99599 0.90326 1.11245 0.92008 0.85650 0.88030 0.95136 0.90756 0.95563 0.88961 0.91663 0.91107 0.91395 0.92787 0.93670 0.93880 0.77678 0.95175 0.90917 0.86954 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.94 9.49 30.89 0.29 -10.64 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 9 O -0.18 -5.07 9.76 0.04 0.00 -5.07 16 10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 11 C -0.23 -5.04 9.17 -39.40 -0.36 -5.40 16 12 C -0.06 -1.17 7.78 -39.61 -0.31 -1.47 16 13 C -0.19 -3.13 4.13 -104.57 -0.43 -3.57 16 14 C 0.11 1.57 5.43 -4.97 -0.03 1.54 16 15 N -0.53 -7.05 4.80 -236.12 -1.13 -8.18 16 16 C 0.05 0.72 4.57 -3.83 -0.02 0.70 16 17 C -0.12 -1.46 6.09 -26.65 -0.16 -1.62 16 18 C -0.11 -1.20 5.16 -26.61 -0.14 -1.34 16 19 C -0.08 -0.88 2.59 -90.54 -0.23 -1.11 16 20 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 21 C 0.08 0.67 6.43 37.16 0.24 0.91 16 22 O -0.57 -5.01 13.25 -35.23 -0.47 -5.48 16 23 C 0.06 0.68 4.71 -3.84 -0.02 0.66 16 24 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 25 C -0.19 -4.12 9.99 -39.40 -0.39 -4.51 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 28 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.03 0.40 8.02 -51.93 -0.42 -0.02 16 30 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 1.51 5.64 -51.93 -0.29 1.22 16 33 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.76 7.90 -51.92 -0.41 0.35 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 1.53 9.12 45.56 0.42 1.94 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -31.16 345.07 -8.86 -40.03 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.90 Total: 5.27 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -2.30 Total: -22.69 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: -0.37 Total: -32.75 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.47 Total: -10.55 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.16 -8.86 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265927092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.328 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds