Wall clock time and date at job start Tue Mar 31 2020 08:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99831 * 2 1 4 4 H 1.48505 * 109.47363 * 240.00123 * 3 2 1 5 5 H 1.48503 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47257 * 120.00116 * 3 2 1 7 7 C 1.37884 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99653 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46899 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99692 * 270.00155 * 10 9 7 12 12 C 1.50698 * 109.47154 * 269.99689 * 11 10 9 13 13 C 1.34516 * 125.78830 * 89.71639 * 12 11 10 14 14 C 1.41384 * 106.84040 * 179.89207 * 13 12 11 15 15 C 1.34513 * 106.84066 * 0.36955 * 14 13 12 16 16 O 1.34298 * 125.79394 * 270.02684 * 12 11 10 17 17 C 1.34773 * 120.00154 * 89.99689 * 10 9 7 18 18 O 1.21280 * 120.00148 * 0.02562 * 17 10 9 19 19 C 1.50697 * 120.00085 * 180.02562 * 17 10 9 20 20 C 1.52998 * 109.47286 * 180.02562 * 19 17 10 21 21 C 1.53003 * 109.46991 * 179.97438 * 20 19 17 22 22 C 1.53786 * 113.61503 * 85.86302 * 21 20 19 23 23 C 1.54049 * 86.98426 * 140.01654 * 22 21 20 24 24 C 1.53781 * 113.61337 * 183.47096 * 21 20 19 25 25 H 0.96991 * 120.00246 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47555 * 60.00330 * 9 7 2 27 27 H 1.09008 * 109.47238 * 300.00121 * 9 7 2 28 28 H 1.09006 * 109.47297 * 29.99572 * 11 10 9 29 29 H 1.08996 * 109.47396 * 149.99884 * 11 10 9 30 30 H 1.07998 * 126.58093 * 0.03022 * 13 12 11 31 31 H 1.08005 * 126.57908 * 180.16417 * 14 13 12 32 32 H 1.07997 * 125.78900 * 179.74750 * 15 14 13 33 33 H 1.09000 * 109.46992 * 60.00177 * 19 17 10 34 34 H 1.09006 * 109.46974 * 300.00340 * 19 17 10 35 35 H 1.09000 * 109.47147 * 60.00043 * 20 19 17 36 36 H 1.08997 * 109.47118 * 299.99864 * 20 19 17 37 37 H 1.09002 * 112.85017 * 314.66684 * 21 20 19 38 38 H 1.08992 * 113.61675 * 254.61398 * 22 21 20 39 39 H 1.09000 * 113.60973 * 25.51686 * 22 21 20 40 40 H 1.09005 * 113.62125 * 220.02158 * 23 22 21 41 41 H 1.08996 * 113.68970 * 89.12734 * 23 22 21 42 42 H 1.08999 * 113.61567 * 334.48261 * 24 21 20 43 43 H 1.09000 * 113.61379 * 105.30384 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1694 -1.2693 12 6 1.7625 -5.2836 -1.7043 13 6 0.6668 -5.1462 -2.4725 14 6 0.1145 -6.4378 -2.6330 15 6 0.9010 -7.2860 -1.9465 16 8 1.8975 -6.5813 -1.3860 17 6 2.6411 -4.1249 1.1666 18 8 2.2468 -3.6643 2.2170 19 6 3.6208 -5.2699 1.1666 20 6 3.9518 -5.6580 2.6091 21 6 4.9460 -6.8210 2.6090 22 6 6.4146 -6.3760 2.5079 23 6 6.7349 -7.4804 3.5330 24 6 5.2810 -7.3452 4.0153 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.6868 -3.3877 -2.0289 29 1 3.6885 -4.5594 -1.1390 30 1 0.2839 -4.2262 -2.8889 31 1 -0.7711 -6.6937 -3.1958 32 1 0.7555 -8.3526 -1.8602 33 1 4.5333 -4.9673 0.6529 34 1 3.1809 -6.1245 0.6525 35 1 3.0391 -5.9608 3.1224 36 1 4.3916 -4.8036 3.1234 37 1 4.6783 -7.6067 1.9025 38 1 6.8563 -6.5478 1.5265 39 1 6.5920 -5.3679 2.8826 40 1 7.4719 -7.1834 4.2791 41 1 6.9566 -8.4469 3.0805 42 1 5.1492 -6.6016 4.8013 43 1 4.8071 -8.2982 4.2505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267240415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:54 Heat of formation + Delta-G solvation = -14.332966 kcal Electronic energy + Delta-G solvation = -23441.463965 eV Core-core repulsion = 20067.686480 eV Total energy + Delta-G solvation = -3373.777485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.29 seconds Orbital eigenvalues (eV) -42.31500 -39.35671 -38.49185 -35.20272 -32.93077 -32.74151 -32.19894 -30.11443 -27.83702 -26.08120 -25.58972 -25.20836 -22.99016 -21.47789 -21.38785 -20.46218 -19.42760 -18.41204 -17.26254 -16.53735 -16.23690 -15.78208 -15.61093 -15.21315 -14.96848 -14.44901 -14.34280 -14.06027 -13.38463 -12.72990 -12.63968 -12.60074 -12.52025 -12.47173 -12.44196 -12.13825 -11.74048 -11.56159 -11.30977 -11.09733 -10.92909 -10.77895 -10.59054 -10.53719 -10.18777 -10.14022 -10.03794 -9.72482 -9.65665 -8.86985 -8.43853 -8.29584 -7.77064 -6.04489 -4.09556 1.91207 2.83493 3.15238 3.31709 3.36560 3.38753 3.51960 4.00293 4.44378 4.60009 4.64615 4.72832 4.83785 4.93696 5.11945 5.22372 5.26106 5.30245 5.36662 5.48082 5.54560 5.60324 5.71885 5.75247 5.81091 5.86877 5.88531 5.92291 5.96534 6.02040 6.18419 6.20435 6.30592 6.36275 6.46006 6.62048 6.72606 7.04377 7.33420 7.45537 7.52584 7.91618 8.22453 8.36190 8.89763 9.08885 9.55603 11.03655 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.005313 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.818415 B = 5269.100110 C = 7395.925479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.246 3.754 10 N -0.596 5.596 11 C 0.192 3.808 12 C -0.025 4.025 13 C -0.195 4.195 14 C -0.213 4.213 15 C -0.052 4.052 16 O -0.177 6.177 17 C 0.507 3.493 18 O -0.536 6.536 19 C -0.141 4.141 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.138 4.138 25 H 0.264 0.736 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.197 0.803 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 -16.546 -2.220 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.328 5.328 11 C 0.067 3.933 12 C -0.076 4.076 13 C -0.215 4.215 14 C -0.232 4.232 15 C -0.119 4.119 16 O -0.073 6.073 17 C 0.295 3.705 18 O -0.413 6.413 19 C -0.182 4.182 20 C -0.130 4.130 21 C -0.128 4.128 22 C -0.176 4.176 23 C -0.181 4.181 24 C -0.175 4.175 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.214 0.786 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.168 -16.248 -1.462 18.244 hybrid contribution 0.029 0.899 -0.354 0.967 sum 8.197 -15.349 -1.816 17.495 Atomic orbital electron populations 1.69924 1.06004 1.27131 1.50214 1.24929 0.94856 0.99178 0.95028 0.86566 0.79523 0.82741 0.78629 1.20213 1.21199 1.20195 1.21392 0.93326 0.90602 1.51357 0.92419 1.19295 0.87465 0.81954 0.98527 1.48332 1.46279 1.34718 1.03452 1.19870 0.94060 0.90492 0.88899 1.23338 1.00717 0.82763 1.00791 1.21707 0.96998 0.98860 1.03944 1.21824 1.02785 0.93239 1.05386 1.23924 0.90104 0.97783 1.00135 1.83994 1.44748 1.18768 1.59773 1.20524 0.82285 0.83785 0.83919 1.90663 1.58290 1.61549 1.30808 1.21746 0.99173 0.97872 0.99359 1.21296 0.99066 0.97274 0.95331 1.22583 0.94774 0.98111 0.97368 1.23042 0.96383 0.98927 0.99245 1.22851 0.97001 0.99141 0.99123 1.22931 0.96234 1.01137 0.97220 0.92655 0.94968 0.93879 0.86750 0.89761 0.83270 0.83811 0.78596 0.89664 0.89361 0.91381 0.91181 0.89440 0.91720 0.89990 0.91804 0.90535 0.90046 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16 10 N -0.60 -12.62 2.44 -176.43 -0.43 -13.05 16 11 C 0.19 3.14 5.74 -5.20 -0.03 3.11 16 12 C -0.02 -0.39 6.85 -35.62 -0.24 -0.64 16 13 C -0.20 -3.07 10.81 -39.70 -0.43 -3.49 16 14 C -0.21 -2.85 10.91 -39.70 -0.43 -3.29 16 15 C -0.05 -0.64 12.09 29.42 0.36 -0.28 16 16 O -0.18 -2.60 9.54 5.73 0.05 -2.54 16 17 C 0.51 10.71 7.67 -10.99 -0.08 10.62 16 18 O -0.54 -13.69 15.56 5.56 0.09 -13.61 16 19 C -0.14 -2.17 4.25 -27.89 -0.12 -2.29 16 20 C -0.09 -1.32 4.33 -26.73 -0.12 -1.44 16 21 C -0.11 -1.23 3.64 -89.80 -0.33 -1.56 16 22 C -0.14 -1.42 7.65 -25.77 -0.20 -1.62 16 23 C -0.14 -1.31 8.09 -25.78 -0.21 -1.52 16 24 C -0.14 -1.40 7.64 -25.92 -0.20 -1.60 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 27 H 0.04 1.29 7.42 -51.92 -0.39 0.90 16 28 H 0.11 1.83 8.07 -51.93 -0.42 1.41 16 29 H 0.08 1.14 6.44 -51.93 -0.33 0.81 16 30 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 31 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 32 H 0.20 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.09 1.16 7.40 -51.93 -0.38 0.77 16 34 H 0.09 1.27 6.92 -51.93 -0.36 0.91 16 35 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.07 1.10 7.83 -51.93 -0.41 0.69 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.89 7.92 -51.93 -0.41 0.48 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -32.99 358.64 -8.53 -41.52 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.89 Total: 2.35 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.48 Total: -11.03 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.31 Total: -38.79 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.14 Total: -16.15 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.99 -8.53 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267240415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.188 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.29 seconds