Wall clock time and date at job start Tue Mar 31 2020 08:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99831 * 2 1 4 4 H 1.48505 * 109.47363 * 240.00123 * 3 2 1 5 5 H 1.48503 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47257 * 120.00116 * 3 2 1 7 7 C 1.37884 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99653 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46899 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99692 * 270.00155 * 10 9 7 12 12 C 1.50698 * 109.47154 * 269.99689 * 11 10 9 13 13 C 1.34516 * 125.78830 * 89.71639 * 12 11 10 14 14 C 1.41384 * 106.84040 * 179.89207 * 13 12 11 15 15 C 1.34513 * 106.84066 * 0.36955 * 14 13 12 16 16 O 1.34298 * 125.79394 * 270.02684 * 12 11 10 17 17 C 1.34773 * 120.00154 * 89.99689 * 10 9 7 18 18 O 1.21280 * 120.00148 * 0.02562 * 17 10 9 19 19 C 1.50697 * 120.00085 * 180.02562 * 17 10 9 20 20 C 1.52998 * 109.47286 * 180.02562 * 19 17 10 21 21 C 1.53003 * 109.46991 * 179.97438 * 20 19 17 22 22 C 1.53786 * 113.61503 * 85.86302 * 21 20 19 23 23 C 1.54049 * 86.98426 * 140.01654 * 22 21 20 24 24 C 1.53781 * 113.61337 * 183.47096 * 21 20 19 25 25 H 0.96991 * 120.00246 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47555 * 60.00330 * 9 7 2 27 27 H 1.09008 * 109.47238 * 300.00121 * 9 7 2 28 28 H 1.09006 * 109.47297 * 29.99572 * 11 10 9 29 29 H 1.08996 * 109.47396 * 149.99884 * 11 10 9 30 30 H 1.07998 * 126.58093 * 0.03022 * 13 12 11 31 31 H 1.08005 * 126.57908 * 180.16417 * 14 13 12 32 32 H 1.07997 * 125.78900 * 179.74750 * 15 14 13 33 33 H 1.09000 * 109.46992 * 60.00177 * 19 17 10 34 34 H 1.09006 * 109.46974 * 300.00340 * 19 17 10 35 35 H 1.09000 * 109.47147 * 60.00043 * 20 19 17 36 36 H 1.08997 * 109.47118 * 299.99864 * 20 19 17 37 37 H 1.09002 * 112.85017 * 314.66684 * 21 20 19 38 38 H 1.08992 * 113.61675 * 254.61398 * 22 21 20 39 39 H 1.09000 * 113.60973 * 25.51686 * 22 21 20 40 40 H 1.09005 * 113.62125 * 220.02158 * 23 22 21 41 41 H 1.08996 * 113.68970 * 89.12734 * 23 22 21 42 42 H 1.08999 * 113.61567 * 334.48261 * 24 21 20 43 43 H 1.09000 * 113.61379 * 105.30384 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1694 -1.2693 12 6 1.7625 -5.2836 -1.7043 13 6 0.6668 -5.1462 -2.4725 14 6 0.1145 -6.4378 -2.6330 15 6 0.9010 -7.2860 -1.9465 16 8 1.8975 -6.5813 -1.3860 17 6 2.6411 -4.1249 1.1666 18 8 2.2468 -3.6643 2.2170 19 6 3.6208 -5.2699 1.1666 20 6 3.9518 -5.6580 2.6091 21 6 4.9460 -6.8210 2.6090 22 6 6.4146 -6.3760 2.5079 23 6 6.7349 -7.4804 3.5330 24 6 5.2810 -7.3452 4.0153 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.6868 -3.3877 -2.0289 29 1 3.6885 -4.5594 -1.1390 30 1 0.2839 -4.2262 -2.8889 31 1 -0.7711 -6.6937 -3.1958 32 1 0.7555 -8.3526 -1.8602 33 1 4.5333 -4.9673 0.6529 34 1 3.1809 -6.1245 0.6525 35 1 3.0391 -5.9608 3.1224 36 1 4.3916 -4.8036 3.1234 37 1 4.6783 -7.6067 1.9025 38 1 6.8563 -6.5478 1.5265 39 1 6.5920 -5.3679 2.8826 40 1 7.4719 -7.1834 4.2791 41 1 6.9566 -8.4469 3.0805 42 1 5.1492 -6.6016 4.8013 43 1 4.8071 -8.2982 4.2505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267240415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:47 Heat of formation + Delta-G solvation = -32.763231 kcal Electronic energy + Delta-G solvation = -23442.263161 eV Core-core repulsion = 20067.686480 eV Total energy + Delta-G solvation = -3374.576681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.43135 -40.82906 -39.55868 -36.92356 -34.91862 -33.88987 -33.57311 -31.51553 -29.61021 -27.33540 -26.71524 -26.37059 -24.70712 -22.70508 -22.54808 -21.64372 -20.31605 -19.90141 -18.83212 -18.19151 -17.80946 -17.29739 -16.71711 -16.58101 -16.31337 -16.04110 -15.50904 -15.24685 -14.81221 -14.38150 -13.99571 -13.94340 -13.73943 -13.65826 -13.54814 -13.27472 -13.25489 -13.05056 -12.84075 -12.65701 -12.56674 -12.21357 -12.19594 -11.88855 -11.75878 -11.37284 -11.06122 -10.94344 -10.81364 -10.63994 -10.56244 -9.67263 -9.36773 -8.22408 -6.37195 0.76891 1.37435 1.41844 1.48943 1.68779 1.77445 2.15289 2.35394 2.49234 3.07815 3.63680 3.72495 3.81188 3.83576 3.98572 4.03679 4.07834 4.17158 4.28649 4.36840 4.40085 4.57963 4.68853 4.72397 4.86856 4.94020 4.94628 4.95648 5.02288 5.05613 5.06225 5.14757 5.21484 5.21717 5.24143 5.33882 5.47888 5.51992 5.63332 5.72139 5.79780 6.05050 6.23830 6.65036 6.73632 7.27361 7.43773 8.85186 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.005313 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.818415 B = 5269.100110 C = 7395.925479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.265 3.735 10 N -0.600 5.600 11 C 0.190 3.810 12 C -0.044 4.044 13 C -0.213 4.213 14 C -0.231 4.231 15 C -0.033 4.033 16 O -0.180 6.180 17 C 0.496 3.504 18 O -0.594 6.594 19 C -0.123 4.123 20 C -0.087 4.087 21 C -0.106 4.106 22 C -0.140 4.140 23 C -0.134 4.134 24 C -0.142 4.142 25 H 0.267 0.733 26 H 0.022 0.978 27 H -0.008 1.008 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.138 0.862 31 H 0.166 0.834 32 H 0.244 0.756 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.400 -18.538 -3.355 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.076 0.924 9 C 0.144 3.856 10 N -0.330 5.330 11 C 0.068 3.932 12 C -0.095 4.095 13 C -0.233 4.233 14 C -0.250 4.250 15 C -0.101 4.101 16 O -0.076 6.076 17 C 0.286 3.714 18 O -0.475 6.475 19 C -0.163 4.163 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.178 4.178 23 C -0.172 4.172 24 C -0.180 4.180 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.010 0.990 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.156 0.844 31 H 0.184 0.816 32 H 0.260 0.740 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.273 -18.272 -2.641 21.127 hybrid contribution -0.715 1.441 -0.020 1.609 sum 9.557 -16.831 -2.661 19.538 Atomic orbital electron populations 1.70057 1.07676 1.28212 1.50931 1.25867 0.95745 1.03073 0.94366 0.85465 0.78284 0.77977 0.79071 1.18164 1.20528 1.20386 1.21678 0.93433 0.91651 1.51350 0.92370 1.18707 0.87848 0.83647 0.95447 1.48312 1.45299 1.33706 1.05720 1.20044 0.95826 0.90862 0.86505 1.23022 1.01091 0.83408 1.01967 1.21905 0.97418 0.99806 1.04181 1.22132 1.04062 0.92250 1.06520 1.24840 0.88178 0.99375 0.97658 1.83977 1.45568 1.18101 1.59974 1.21630 0.82397 0.84536 0.82845 1.90628 1.60407 1.63607 1.32813 1.21724 0.98345 0.95681 1.00536 1.21249 0.99065 0.97979 0.94242 1.22591 0.94268 0.97043 0.98570 1.23048 0.95527 0.98826 1.00356 1.22834 0.96135 0.99448 0.98734 1.22956 0.97416 1.01227 0.96366 0.92443 0.95987 0.99016 0.86906 0.86238 0.84443 0.81646 0.74001 0.86963 0.87488 0.93378 0.93246 0.87838 0.90356 0.91118 0.91302 0.88907 0.91196 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.54 -31.32 9.39 25.60 0.24 -31.08 16 8 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 9 C 0.26 14.55 5.16 85.63 0.44 15.00 16 10 N -0.60 -26.08 2.44 -830.51 -2.03 -28.11 16 11 C 0.19 6.14 5.74 85.63 0.49 6.63 16 12 C -0.04 -1.36 6.85 24.83 0.17 -1.19 16 13 C -0.21 -6.67 10.81 22.19 0.24 -6.43 16 14 C -0.23 -5.75 10.91 22.19 0.24 -5.51 16 15 C -0.03 -0.71 12.09 66.97 0.81 0.10 16 16 O -0.18 -4.82 9.54 -2.42 -0.02 -4.84 16 17 C 0.50 21.44 7.67 87.66 0.67 22.12 16 18 O -0.59 -32.02 15.56 -3.03 -0.05 -32.07 16 19 C -0.12 -3.64 4.25 29.85 0.13 -3.51 16 20 C -0.09 -2.49 4.33 30.59 0.13 -2.36 16 21 C -0.11 -2.15 3.64 -10.26 -0.04 -2.19 16 22 C -0.14 -2.53 7.65 31.21 0.24 -2.29 16 23 C -0.13 -2.08 8.09 31.21 0.25 -1.83 16 24 C -0.14 -2.65 7.64 31.12 0.24 -2.41 16 25 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.02 1.23 8.07 -2.39 -0.02 1.22 16 27 H -0.01 -0.53 7.42 -2.38 -0.02 -0.55 16 28 H 0.11 3.63 8.07 -2.38 -0.02 3.61 16 29 H 0.12 2.96 6.44 -2.39 -0.02 2.94 16 30 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 31 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.24 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.11 2.73 7.40 -2.39 -0.02 2.72 16 34 H 0.11 2.80 6.92 -2.38 -0.02 2.79 16 35 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 36 H 0.05 1.59 7.83 -2.39 -0.02 1.58 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.44 7.92 -2.39 -0.02 1.42 16 40 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -75.83 358.64 5.91 -69.91 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.98 Total: 18.62 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.72 Total: -13.98 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -1.74 Total: -84.61 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.07 Total: -36.92 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -75.83 5.91 -69.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267240415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.148 kcal (2) G-P(sol) polarization free energy of solvation -75.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds