Wall clock time and date at job start Tue Mar 31 2020 07:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99589 * 2 1 4 4 H 1.48499 * 109.46997 * 270.00238 * 3 2 1 5 5 H 1.48493 * 109.47106 * 30.00545 * 3 2 1 6 6 H 1.48507 * 109.46799 * 150.00316 * 3 2 1 7 7 C 1.37875 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00196 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99842 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46834 * 179.97438 * 9 7 2 11 11 C 1.47008 * 111.00069 * 298.18875 * 10 9 7 12 12 C 1.53103 * 109.25740 * 177.61004 * 11 10 9 13 13 O 1.43013 * 109.25826 * 56.84855 * 12 11 10 14 14 C 1.43022 * 113.74068 * 301.32919 * 13 12 11 15 15 C 1.47018 * 110.99707 * 174.55710 * 10 9 7 16 16 H 1.08992 * 109.54600 * 62.43145 * 15 10 9 17 17 C 1.53005 * 109.50412 * 302.32317 * 15 10 9 18 18 C 1.53005 * 109.46805 * 176.92533 * 17 15 10 19 19 H 1.08994 * 109.47311 * 55.31407 * 18 17 15 20 20 O 1.42901 * 109.47079 * 295.30611 * 18 17 15 21 21 C 1.50706 * 109.46807 * 175.31330 * 18 17 15 22 22 C 1.38237 * 119.99376 * 264.99712 * 21 18 17 23 23 C 1.38238 * 119.99166 * 180.25726 * 22 21 18 24 24 C 1.38232 * 120.00607 * 359.50959 * 23 22 21 25 25 C 1.38239 * 119.99537 * 0.47103 * 24 23 22 26 26 C 1.38229 * 119.99970 * 84.97798 * 21 18 17 27 27 H 0.97000 * 120.00268 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47308 * 60.00311 * 9 7 2 29 29 H 1.08999 * 109.46944 * 299.99815 * 9 7 2 30 30 H 1.09001 * 109.50801 * 57.67517 * 11 10 9 31 31 H 1.08996 * 109.54547 * 297.56474 * 11 10 9 32 32 H 1.09000 * 109.50838 * 296.91524 * 12 11 10 33 33 H 1.08999 * 109.54402 * 176.80357 * 12 11 10 34 34 H 1.08995 * 109.50288 * 298.73574 * 14 13 12 35 35 H 1.08996 * 109.50631 * 178.60354 * 14 13 12 36 36 H 1.08998 * 109.46717 * 56.93059 * 17 15 10 37 37 H 1.08989 * 109.47465 * 296.92569 * 17 15 10 38 38 H 0.96699 * 114.00480 * 302.86935 * 20 18 17 39 39 H 1.07990 * 120.00455 * 359.97438 * 22 21 18 40 40 H 1.08001 * 119.99278 * 179.72650 * 23 22 21 41 41 H 1.08001 * 120.00502 * 180.25750 * 24 23 22 42 42 H 1.08000 * 119.99506 * 179.78583 * 25 24 23 43 43 H 1.08001 * 120.00371 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2059 -3.6156 -0.0018 11 6 3.0400 -3.5941 -1.2121 12 6 4.0577 -4.7360 -1.1442 13 8 3.3645 -5.9769 -0.9864 14 6 2.5428 -6.0327 0.1829 15 6 1.5099 -4.9040 0.1284 16 1 0.8536 -5.0522 -0.7291 17 6 0.6799 -4.9087 1.4137 18 6 -0.1039 -6.2193 1.5099 19 1 0.5853 -7.0608 1.4397 20 8 -1.0501 -6.2879 0.4413 21 6 -0.8309 -6.2742 2.8288 22 6 -0.2578 -6.9215 3.9074 23 6 -0.9271 -6.9764 5.1157 24 6 -2.1648 -6.3753 5.2483 25 6 -2.7376 -5.7276 4.1698 26 6 -2.0705 -5.6768 2.9601 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6249 -2.5571 0.8897 30 1 3.5657 -2.6413 -1.2750 31 1 2.4093 -3.7206 -2.0920 32 1 4.7233 -4.5804 -0.2952 33 1 4.6412 -4.7596 -2.0646 34 1 3.1644 -5.9148 1.0704 35 1 2.0301 -6.9938 0.2219 36 1 -0.0157 -4.0696 1.4001 37 1 1.3423 -4.8176 2.2744 38 1 -1.6688 -5.5452 0.4154 39 1 0.7106 -7.3883 3.8049 40 1 -0.4813 -7.4860 5.9572 41 1 -2.6858 -6.4146 6.1936 42 1 -3.7062 -5.2609 4.2724 43 1 -2.5183 -5.1711 2.1173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268686923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:14 Heat of formation + Delta-G solvation = -67.730958 kcal Electronic energy + Delta-G solvation = -23777.497671 eV Core-core repulsion = 20401.404676 eV Total energy + Delta-G solvation = -3376.092995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88223 -38.96471 -36.93158 -35.28797 -32.90304 -32.20501 -31.15815 -30.86593 -28.54335 -27.43506 -25.32343 -24.50710 -22.60253 -21.92905 -21.82344 -20.80189 -19.36504 -17.52983 -16.60967 -16.06032 -15.98549 -15.76556 -15.38081 -15.21196 -14.55254 -14.44384 -14.19180 -13.95123 -13.59651 -13.34192 -13.26006 -12.94044 -12.85458 -12.50285 -12.07605 -11.76587 -11.54349 -11.23459 -11.16052 -11.02038 -10.85980 -10.79387 -10.69377 -10.50313 -10.14527 -9.93073 -9.84448 -9.22520 -8.97431 -8.94044 -8.71101 -8.47130 -7.32144 -6.08812 -4.09966 1.30639 1.37569 3.27723 3.34331 3.38068 3.72419 4.21523 4.35799 4.51798 4.56819 4.80390 4.84020 4.95656 5.07109 5.16749 5.27165 5.34585 5.40362 5.44857 5.54012 5.58275 5.60572 5.73254 5.78883 5.86721 5.95062 5.97775 6.03279 6.16802 6.33765 6.41435 6.43886 6.47354 6.59233 6.60717 6.64180 6.95716 7.20652 7.29454 7.51636 7.68691 7.72221 7.99870 8.11161 8.47667 8.96814 9.54410 11.02171 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.004982 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.495917 B = 5619.384893 C = 7207.569127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.191 3.809 10 N -0.531 5.531 11 C 0.029 3.971 12 C 0.061 3.939 13 O -0.392 6.392 14 C 0.069 3.931 15 C 0.053 3.947 16 H 0.047 0.953 17 C -0.138 4.138 18 C 0.145 3.855 19 H 0.106 0.894 20 O -0.555 6.555 21 C -0.107 4.107 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.108 4.108 27 H 0.261 0.739 28 H -0.010 1.010 29 H 0.037 0.963 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.375 0.625 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 -13.316 6.477 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.257 5.257 11 C -0.099 4.099 12 C -0.015 4.015 13 O -0.311 6.311 14 C -0.008 4.008 15 C -0.056 4.056 16 H 0.065 0.935 17 C -0.176 4.176 18 C 0.085 3.915 19 H 0.123 0.877 20 O -0.361 6.361 21 C -0.107 4.107 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.135 4.135 26 C -0.126 4.126 27 H 0.071 0.929 28 H 0.007 0.993 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.224 0.776 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.897 -13.828 6.622 15.358 hybrid contribution -0.527 1.785 -0.255 1.879 sum -1.424 -12.043 6.367 13.697 Atomic orbital electron populations 1.69944 1.06053 1.26827 1.50867 1.24967 0.94858 0.99280 0.95331 0.86518 0.79839 0.83129 0.78073 1.20703 1.21227 1.19770 1.21150 0.93433 0.89984 1.50314 0.91923 1.19790 0.90293 0.87108 0.96190 1.62384 1.24686 1.01933 1.36680 1.22606 0.96108 0.99358 0.91852 1.22747 0.94083 0.83576 1.01143 1.87899 1.62162 1.36040 1.44978 1.22727 0.91929 0.98038 0.88061 1.22087 0.94578 0.91798 0.97156 0.93497 1.22327 0.99692 0.96956 0.98591 1.20943 0.89193 0.98807 0.82508 0.87685 1.86573 1.47980 1.50641 1.50911 1.20632 0.95590 0.97860 0.96633 1.20975 0.99829 0.99449 0.92795 1.21109 0.95366 0.99932 0.97430 1.21137 0.95989 0.98577 0.98670 1.21126 0.99994 0.99292 0.93079 1.20928 0.94822 0.99028 0.97862 0.92895 0.99266 0.94487 0.88835 0.95225 0.92832 0.89374 0.92909 0.89425 0.89807 0.90212 0.77617 0.85966 0.86154 0.86286 0.86056 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.99 8.46 -34.44 -0.29 -14.28 16 8 H 0.06 1.70 6.82 -52.49 -0.36 1.34 16 9 C 0.19 4.83 4.45 -4.98 -0.02 4.81 16 10 N -0.53 -11.26 4.56 -227.77 -1.04 -12.30 16 11 C 0.03 0.58 5.42 -3.71 -0.02 0.56 16 12 C 0.06 1.01 7.01 37.21 0.26 1.27 16 13 O -0.39 -6.82 10.83 -35.23 -0.38 -7.20 16 14 C 0.07 1.10 5.93 37.21 0.22 1.32 16 15 C 0.05 0.95 2.00 -67.59 -0.14 0.82 16 16 H 0.05 0.93 7.73 -51.93 -0.40 0.53 16 17 C -0.14 -2.21 4.15 -26.73 -0.11 -2.32 16 18 C 0.14 1.95 3.05 -27.88 -0.08 1.86 16 19 H 0.11 1.31 6.28 -51.93 -0.33 0.98 16 20 O -0.55 -7.90 12.57 -35.23 -0.44 -8.34 16 21 C -0.11 -1.38 5.00 -104.62 -0.52 -1.90 16 22 C -0.11 -1.31 9.68 -39.58 -0.38 -1.70 16 23 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 25 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 26 C -0.11 -1.36 9.33 -39.58 -0.37 -1.73 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 16 29 H 0.04 0.98 5.91 -51.93 -0.31 0.67 16 30 H 0.09 1.93 6.52 -51.93 -0.34 1.59 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.21 6.59 -51.93 -0.34 0.87 16 36 H 0.08 1.53 6.09 -51.93 -0.32 1.21 16 37 H 0.08 1.29 8.14 -51.94 -0.42 0.87 16 38 H 0.38 4.58 7.50 45.56 0.34 4.92 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.12 1.39 6.68 -52.49 -0.35 1.04 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -31.10 341.68 -9.51 -40.61 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.76 Total: 6.10 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -2.75 Total: -14.95 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.30 Total: -37.64 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.82 Total: -15.54 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.10 -9.51 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268686923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.121 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds