Wall clock time and date at job start Tue Mar 31 2020 07:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99589 * 2 1 4 4 H 1.48499 * 109.46997 * 270.00238 * 3 2 1 5 5 H 1.48493 * 109.47106 * 30.00545 * 3 2 1 6 6 H 1.48507 * 109.46799 * 150.00316 * 3 2 1 7 7 C 1.37875 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00196 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99842 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46834 * 179.97438 * 9 7 2 11 11 C 1.47008 * 111.00069 * 298.18875 * 10 9 7 12 12 C 1.53103 * 109.25740 * 177.61004 * 11 10 9 13 13 O 1.43013 * 109.25826 * 56.84855 * 12 11 10 14 14 C 1.43022 * 113.74068 * 301.32919 * 13 12 11 15 15 C 1.47018 * 110.99707 * 174.55710 * 10 9 7 16 16 H 1.08992 * 109.54600 * 62.43145 * 15 10 9 17 17 C 1.53005 * 109.50412 * 302.32317 * 15 10 9 18 18 C 1.53005 * 109.46805 * 176.92533 * 17 15 10 19 19 H 1.08994 * 109.47311 * 55.31407 * 18 17 15 20 20 O 1.42901 * 109.47079 * 295.30611 * 18 17 15 21 21 C 1.50706 * 109.46807 * 175.31330 * 18 17 15 22 22 C 1.38237 * 119.99376 * 264.99712 * 21 18 17 23 23 C 1.38238 * 119.99166 * 180.25726 * 22 21 18 24 24 C 1.38232 * 120.00607 * 359.50959 * 23 22 21 25 25 C 1.38239 * 119.99537 * 0.47103 * 24 23 22 26 26 C 1.38229 * 119.99970 * 84.97798 * 21 18 17 27 27 H 0.97000 * 120.00268 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47308 * 60.00311 * 9 7 2 29 29 H 1.08999 * 109.46944 * 299.99815 * 9 7 2 30 30 H 1.09001 * 109.50801 * 57.67517 * 11 10 9 31 31 H 1.08996 * 109.54547 * 297.56474 * 11 10 9 32 32 H 1.09000 * 109.50838 * 296.91524 * 12 11 10 33 33 H 1.08999 * 109.54402 * 176.80357 * 12 11 10 34 34 H 1.08995 * 109.50288 * 298.73574 * 14 13 12 35 35 H 1.08996 * 109.50631 * 178.60354 * 14 13 12 36 36 H 1.08998 * 109.46717 * 56.93059 * 17 15 10 37 37 H 1.08989 * 109.47465 * 296.92569 * 17 15 10 38 38 H 0.96699 * 114.00480 * 302.86935 * 20 18 17 39 39 H 1.07990 * 120.00455 * 359.97438 * 22 21 18 40 40 H 1.08001 * 119.99278 * 179.72650 * 23 22 21 41 41 H 1.08001 * 120.00502 * 180.25750 * 24 23 22 42 42 H 1.08000 * 119.99506 * 179.78583 * 25 24 23 43 43 H 1.08001 * 120.00371 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2059 -3.6156 -0.0018 11 6 3.0400 -3.5941 -1.2121 12 6 4.0577 -4.7360 -1.1442 13 8 3.3645 -5.9769 -0.9864 14 6 2.5428 -6.0327 0.1829 15 6 1.5099 -4.9040 0.1284 16 1 0.8536 -5.0522 -0.7291 17 6 0.6799 -4.9087 1.4137 18 6 -0.1039 -6.2193 1.5099 19 1 0.5853 -7.0608 1.4397 20 8 -1.0501 -6.2879 0.4413 21 6 -0.8309 -6.2742 2.8288 22 6 -0.2578 -6.9215 3.9074 23 6 -0.9271 -6.9764 5.1157 24 6 -2.1648 -6.3753 5.2483 25 6 -2.7376 -5.7276 4.1698 26 6 -2.0705 -5.6768 2.9601 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6249 -2.5571 0.8897 30 1 3.5657 -2.6413 -1.2750 31 1 2.4093 -3.7206 -2.0920 32 1 4.7233 -4.5804 -0.2952 33 1 4.6412 -4.7596 -2.0646 34 1 3.1644 -5.9148 1.0704 35 1 2.0301 -6.9938 0.2219 36 1 -0.0157 -4.0696 1.4001 37 1 1.3423 -4.8176 2.2744 38 1 -1.6688 -5.5452 0.4154 39 1 0.7106 -7.3883 3.8049 40 1 -0.4813 -7.4860 5.9572 41 1 -2.6858 -6.4146 6.1936 42 1 -3.7062 -5.2609 4.2724 43 1 -2.5183 -5.1711 2.1173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268686923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:13 Heat of formation + Delta-G solvation = -89.453247 kcal Electronic energy + Delta-G solvation = -23778.439620 eV Core-core repulsion = 20401.404676 eV Total energy + Delta-G solvation = -3377.034945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07468 -40.17211 -38.02693 -36.90020 -34.73198 -33.74402 -32.23488 -31.72824 -30.23763 -28.86884 -27.07160 -25.72081 -23.71508 -23.49223 -23.19027 -21.86755 -20.89006 -18.65163 -18.49108 -17.45681 -17.31848 -17.00912 -16.54279 -16.48217 -16.23398 -15.73310 -15.49293 -15.24912 -14.93651 -14.64322 -14.44429 -14.22097 -14.16163 -13.98240 -13.76939 -13.09533 -12.86510 -12.72609 -12.68292 -12.56412 -12.34021 -12.21346 -12.06720 -11.93086 -11.83752 -11.31299 -11.27921 -10.98912 -10.66688 -10.41941 -9.81752 -9.63638 -9.11929 -8.23305 -6.32867 0.41014 0.50342 1.39606 1.40446 1.51907 2.37675 2.80376 2.90194 3.08060 3.14274 3.48001 3.63661 3.79712 3.96393 4.06400 4.14716 4.15952 4.21290 4.26006 4.28523 4.31431 4.42125 4.53648 4.64839 4.65488 4.72813 4.83568 4.93427 4.95235 5.05256 5.07618 5.12674 5.17352 5.23360 5.28315 5.56038 5.61063 5.61829 5.66399 6.00116 6.11101 6.16232 6.23501 6.55499 6.61355 6.82293 7.36661 8.88044 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.004982 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.495917 B = 5619.384893 C = 7207.569127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.064 0.936 9 C 0.209 3.791 10 N -0.534 5.534 11 C 0.026 3.974 12 C 0.070 3.930 13 O -0.400 6.400 14 C 0.074 3.926 15 C 0.053 3.947 16 H 0.024 0.976 17 C -0.125 4.125 18 C 0.156 3.844 19 H 0.122 0.878 20 O -0.567 6.567 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.130 4.130 27 H 0.264 0.736 28 H -0.048 1.048 29 H 0.019 0.981 30 H 0.081 0.919 31 H 0.012 0.988 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.381 0.619 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.136 0.864 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.076 -14.316 7.796 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.082 0.918 9 C 0.083 3.917 10 N -0.259 5.259 11 C -0.102 4.102 12 C -0.006 4.006 13 O -0.319 6.319 14 C -0.003 4.003 15 C -0.056 4.056 16 H 0.042 0.958 17 C -0.163 4.163 18 C 0.097 3.903 19 H 0.139 0.861 20 O -0.374 6.374 21 C -0.126 4.126 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.148 4.148 27 H 0.073 0.927 28 H -0.031 1.031 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.230 0.770 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.154 0.846 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.582 -14.848 7.939 16.847 hybrid contribution -1.041 2.067 -0.647 2.403 sum -0.459 -12.781 7.292 14.722 Atomic orbital electron populations 1.70076 1.07702 1.27870 1.51634 1.25875 0.95708 1.03076 0.94729 0.85416 0.78668 0.78371 0.78386 1.19917 1.20804 1.18769 1.21471 0.93651 0.91070 1.50266 0.91767 1.19413 0.90243 0.88536 0.93517 1.62349 1.23911 1.02259 1.37397 1.22674 0.96373 1.00637 0.90515 1.22777 0.92938 0.81724 1.03194 1.87898 1.62270 1.36073 1.45617 1.22830 0.91360 0.97902 0.88226 1.22201 0.95174 0.91063 0.97170 0.95810 1.22184 0.98980 0.97630 0.97501 1.20868 0.89036 0.97460 0.82927 0.86061 1.86535 1.48284 1.51033 1.51533 1.20625 0.95961 0.99264 0.96703 1.21276 1.00694 0.99165 0.92724 1.21489 0.95284 0.99522 0.97877 1.21519 0.96160 0.97577 0.99351 1.21402 1.00745 0.99613 0.92970 1.21109 0.95385 0.99695 0.98625 0.92714 1.03082 0.96261 0.90035 0.96991 0.91708 0.86458 0.91491 0.86882 0.92932 0.90106 0.77023 0.84085 0.83447 0.83764 0.84627 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.53 -29.59 8.46 25.60 0.22 -29.37 16 8 H 0.06 3.52 6.82 -2.91 -0.02 3.50 16 9 C 0.21 11.11 4.45 85.56 0.38 11.49 16 10 N -0.53 -23.21 4.56 -874.54 -3.99 -27.20 16 11 C 0.03 1.06 5.42 86.32 0.47 1.53 16 12 C 0.07 2.19 7.01 72.02 0.50 2.69 16 13 O -0.40 -13.06 10.83 -148.98 -1.61 -14.68 16 14 C 0.07 2.20 5.93 72.02 0.43 2.62 16 15 C 0.05 1.93 2.00 44.93 0.09 2.02 16 16 H 0.02 0.98 7.73 -2.39 -0.02 0.97 16 17 C -0.12 -4.11 4.15 30.60 0.13 -3.98 16 18 C 0.16 4.18 3.05 29.85 0.09 4.27 16 19 H 0.12 2.81 6.28 -2.39 -0.02 2.79 16 20 O -0.57 -16.54 12.57 -148.98 -1.87 -18.41 16 21 C -0.13 -3.18 5.00 -19.86 -0.10 -3.28 16 22 C -0.12 -2.60 9.68 22.27 0.22 -2.39 16 23 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 24 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 25 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 26 C -0.13 -3.33 9.33 22.27 0.21 -3.12 16 27 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 28 H -0.05 -2.89 8.14 -2.39 -0.02 -2.90 16 29 H 0.02 1.09 5.91 -2.39 -0.01 1.08 16 30 H 0.08 3.41 6.52 -2.39 -0.02 3.39 16 31 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 2.82 6.59 -2.39 -0.02 2.81 16 36 H 0.05 2.05 6.09 -2.39 -0.01 2.04 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.38 10.03 7.50 -74.06 -0.56 9.47 16 39 H 0.14 2.40 8.06 -2.92 -0.02 2.37 16 40 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 42 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.12 2.92 6.68 -2.91 -0.02 2.90 16 Total: -1.00 -68.09 341.68 -0.95 -69.04 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.45 Total: 24.61 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 3.76 Total: -23.84 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.71 Total: -82.66 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -3.49 Total: -33.08 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -68.09 -0.95 -69.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268686923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.410 kcal (2) G-P(sol) polarization free energy of solvation -68.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds