Wall clock time and date at job start Tue Mar 31 2020 07:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99633 * 2 1 4 4 H 1.48504 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47051 * 299.99513 * 3 2 1 6 6 H 1.48498 * 109.47586 * 59.99467 * 3 2 1 7 7 C 1.37877 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99701 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47015 * 179.97438 * 9 7 2 11 11 C 1.47017 * 110.99791 * 65.63195 * 10 9 7 12 12 C 1.53095 * 109.25658 * 182.39196 * 11 10 9 13 13 O 1.43015 * 109.29496 * 303.12854 * 12 11 10 14 14 C 1.43097 * 113.68897 * 58.64726 * 13 12 11 15 15 C 1.47012 * 111.00233 * 189.26185 * 10 9 7 16 16 H 1.08993 * 109.50876 * 297.54719 * 15 10 9 17 17 C 1.53003 * 109.50408 * 57.63238 * 15 10 9 18 18 C 1.53003 * 109.47174 * 62.84172 * 17 15 10 19 19 H 1.08998 * 109.47208 * 54.51114 * 18 17 15 20 20 O 1.42900 * 109.47296 * 294.51155 * 18 17 15 21 21 C 1.50702 * 109.47053 * 174.50798 * 18 17 15 22 22 C 1.38228 * 120.00007 * 84.72772 * 21 18 17 23 23 C 1.38236 * 120.00343 * 179.76414 * 22 21 18 24 24 C 1.38238 * 119.99510 * 0.50926 * 23 22 21 25 25 C 1.38238 * 120.00053 * 359.74229 * 24 23 22 26 26 C 1.38231 * 119.99979 * 0.02562 * 25 24 23 27 27 H 0.96995 * 120.00408 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47203 * 59.99633 * 9 7 2 29 29 H 1.09001 * 109.47377 * 299.99774 * 9 7 2 30 30 H 1.08995 * 109.50755 * 62.46005 * 11 10 9 31 31 H 1.09001 * 109.50208 * 302.32312 * 11 10 9 32 32 H 1.09002 * 109.50885 * 63.08790 * 12 11 10 33 33 H 1.09005 * 109.50859 * 183.16685 * 12 11 10 34 34 H 1.08997 * 109.49015 * 181.41363 * 14 13 12 35 35 H 1.09007 * 109.49156 * 61.30527 * 14 13 12 36 36 H 1.08997 * 109.47258 * 182.83980 * 17 15 10 37 37 H 1.08994 * 109.47104 * 302.84428 * 17 15 10 38 38 H 0.96706 * 113.99772 * 299.99842 * 20 18 17 39 39 H 1.08005 * 120.00250 * 0.02562 * 22 21 18 40 40 H 1.07999 * 120.00387 * 180.23273 * 23 22 21 41 41 H 1.07996 * 119.99810 * 179.72635 * 24 23 22 42 42 H 1.07997 * 119.99911 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.00148 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 2.9786 -3.6480 1.2508 12 6 3.9996 -4.7868 1.1839 13 8 3.3172 -6.0194 0.9381 14 6 2.5542 -6.0227 -0.2725 15 6 1.5187 -4.8963 -0.2204 16 1 0.8211 -5.0808 0.5966 17 6 0.7529 -4.8436 -1.5439 18 6 1.7406 -4.6576 -2.6975 19 1 2.4983 -5.4401 -2.6569 20 8 2.3695 -3.3794 -2.5848 21 6 1.0027 -4.7406 -4.0089 22 6 0.3837 -3.6180 -4.5259 23 6 -0.2890 -3.6928 -5.7312 24 6 -0.3516 -4.8930 -6.4143 25 6 0.2630 -6.0169 -5.8948 26 6 0.9398 -5.9408 -4.6919 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.3044 -3.8126 2.0913 31 1 3.4994 -2.6994 1.3813 32 1 4.7066 -4.5949 0.3768 33 1 4.5364 -4.8504 2.1305 34 1 2.0453 -6.9806 -0.3790 35 1 3.2193 -5.8667 -1.1220 36 1 0.2031 -5.7744 -1.6829 37 1 0.0536 -4.0077 -1.5260 38 1 1.7537 -2.6342 -2.6134 39 1 0.4292 -2.6812 -3.9902 40 1 -0.7695 -2.8148 -6.1370 41 1 -0.8810 -4.9526 -7.3538 42 1 0.2137 -6.9546 -6.4283 43 1 1.4196 -6.8190 -4.2857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268686924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:18 Heat of formation + Delta-G solvation = -57.464709 kcal Electronic energy + Delta-G solvation = -24434.739350 eV Core-core repulsion = 21059.091532 eV Total energy + Delta-G solvation = -3375.647817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.80251 -38.85402 -36.55822 -34.94960 -32.82199 -32.03786 -31.01275 -30.69396 -28.49452 -27.25659 -25.25710 -24.43755 -22.44697 -21.84791 -21.77265 -20.88098 -18.90055 -17.29693 -16.55305 -15.93830 -15.82946 -15.49212 -15.12633 -15.06741 -14.49730 -14.39460 -14.16785 -13.81968 -13.47644 -13.22447 -13.15515 -12.83205 -12.53071 -12.18605 -11.97888 -11.48793 -11.41172 -11.21950 -11.07581 -10.94989 -10.78637 -10.74649 -10.65723 -10.25787 -10.14495 -9.82048 -9.32989 -9.16467 -8.91231 -8.81597 -8.55901 -8.41431 -7.14539 -6.05700 -4.05955 1.45001 1.50433 3.29146 3.37618 3.42722 3.87759 4.25292 4.40213 4.76831 4.82521 4.95993 5.06723 5.15657 5.19572 5.21518 5.31164 5.44618 5.52348 5.56429 5.61487 5.67960 5.76803 5.82534 5.91163 5.93320 6.03001 6.08844 6.14479 6.22192 6.32370 6.45866 6.54521 6.56812 6.61918 6.64246 6.83156 7.10100 7.21763 7.32793 7.53737 7.79952 8.04860 8.18948 8.44132 8.54505 9.03643 9.58619 11.04695 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.006403 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.916777 B = 4371.876709 C = 6288.410976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.498 4.498 8 H 0.065 0.935 9 C 0.194 3.806 10 N -0.506 5.506 11 C 0.029 3.971 12 C 0.063 3.937 13 O -0.395 6.395 14 C 0.068 3.932 15 C 0.053 3.947 16 H 0.035 0.965 17 C -0.141 4.141 18 C 0.154 3.846 19 H 0.098 0.902 20 O -0.522 6.522 21 C -0.108 4.108 22 C -0.108 4.108 23 C -0.117 4.117 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.117 4.117 27 H 0.260 0.740 28 H 0.033 0.967 29 H -0.016 1.016 30 H 0.024 0.976 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.377 0.623 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 -11.443 -7.729 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.537 4.537 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.232 5.232 11 C -0.100 4.100 12 C -0.014 4.014 13 O -0.313 6.313 14 C -0.009 4.009 15 C -0.057 4.057 16 H 0.053 0.947 17 C -0.179 4.179 18 C 0.094 3.906 19 H 0.116 0.884 20 O -0.328 6.328 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.135 4.135 24 C -0.148 4.148 25 C -0.142 4.142 26 C -0.135 4.135 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.002 0.998 30 H 0.043 0.957 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.227 0.773 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.636 -11.758 -7.952 14.288 hybrid contribution -0.979 1.431 0.443 1.789 sum 0.658 -10.327 -7.509 12.785 Atomic orbital electron populations 1.69963 1.05998 1.26601 1.51463 1.24971 0.94796 0.99202 0.95657 0.86493 0.80201 0.83629 0.77403 1.19660 1.21123 1.21322 1.21177 0.93593 0.89628 1.49263 0.91714 1.19761 0.90126 0.87483 0.95701 1.62406 1.26928 1.01424 1.32434 1.22611 0.96507 0.99278 0.91591 1.22719 0.94292 0.83684 1.00675 1.87894 1.65437 1.35750 1.42253 1.22768 0.93167 0.97621 0.87375 1.22100 0.94785 0.92621 0.96196 0.94691 1.22344 0.98446 1.02690 0.94405 1.20671 0.93198 0.88861 0.87846 0.88428 1.86689 1.36875 1.13587 1.95663 1.20949 0.98072 0.93759 0.98035 1.21064 0.96813 0.98681 0.95990 1.21142 0.99297 0.97774 0.95324 1.21098 1.00449 0.93232 0.99994 1.21073 0.98508 0.98323 0.96263 1.20969 0.99965 0.97253 0.95313 0.93067 0.94902 0.99801 0.95741 0.88985 0.92622 0.89635 0.89846 0.92190 0.91651 0.90001 0.77336 0.85624 0.86186 0.86527 0.86448 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 13.29 55.43 0.74 -24.79 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.50 -13.11 8.48 -34.44 -0.29 -13.40 16 8 H 0.06 1.73 7.09 -52.49 -0.37 1.36 16 9 C 0.19 4.70 3.64 -4.98 -0.02 4.68 16 10 N -0.51 -10.33 3.03 -227.78 -0.69 -11.02 16 11 C 0.03 0.56 5.45 -3.71 -0.02 0.54 16 12 C 0.06 1.04 7.00 37.21 0.26 1.30 16 13 O -0.39 -6.78 10.83 -35.23 -0.38 -7.16 16 14 C 0.07 1.05 5.97 37.21 0.22 1.28 16 15 C 0.05 0.93 2.28 -67.60 -0.15 0.77 16 16 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.14 -2.24 4.47 -26.73 -0.12 -2.36 16 18 C 0.15 2.37 2.94 -27.88 -0.08 2.29 16 19 H 0.10 1.43 5.92 -51.93 -0.31 1.12 16 20 O -0.52 -9.76 10.98 -35.23 -0.39 -10.14 16 21 C -0.11 -1.54 5.00 -104.62 -0.52 -2.06 16 22 C -0.11 -1.57 9.33 -39.59 -0.37 -1.94 16 23 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 24 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 25 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 26 C -0.12 -1.46 9.68 -39.58 -0.38 -1.84 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.03 0.81 4.69 -51.93 -0.24 0.57 16 29 H -0.02 -0.43 8.13 -51.93 -0.42 -0.85 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.89 6.77 -51.93 -0.35 1.54 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.93 6.09 -51.92 -0.32 0.61 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.48 6.03 -51.93 -0.31 1.17 16 38 H 0.38 7.28 6.04 45.56 0.28 7.56 16 39 H 0.13 1.90 6.62 -52.48 -0.35 1.56 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 335.60 15.07 5.06 5.06 Total: -1.00 -29.30 335.60 -9.22 -38.52 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.76 Total: 8.47 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -2.77 Total: -14.97 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.05 Total: -35.81 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.77 Total: -17.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.30 -9.22 -38.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268686924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.946 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds