Wall clock time and date at job start Tue Mar 31 2020 07:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99633 * 2 1 4 4 H 1.48504 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47051 * 299.99513 * 3 2 1 6 6 H 1.48498 * 109.47586 * 59.99467 * 3 2 1 7 7 C 1.37877 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99701 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47015 * 179.97438 * 9 7 2 11 11 C 1.47017 * 110.99791 * 65.63195 * 10 9 7 12 12 C 1.53095 * 109.25658 * 182.39196 * 11 10 9 13 13 O 1.43015 * 109.29496 * 303.12854 * 12 11 10 14 14 C 1.43097 * 113.68897 * 58.64726 * 13 12 11 15 15 C 1.47012 * 111.00233 * 189.26185 * 10 9 7 16 16 H 1.08993 * 109.50876 * 297.54719 * 15 10 9 17 17 C 1.53003 * 109.50408 * 57.63238 * 15 10 9 18 18 C 1.53003 * 109.47174 * 62.84172 * 17 15 10 19 19 H 1.08998 * 109.47208 * 54.51114 * 18 17 15 20 20 O 1.42900 * 109.47296 * 294.51155 * 18 17 15 21 21 C 1.50702 * 109.47053 * 174.50798 * 18 17 15 22 22 C 1.38228 * 120.00007 * 84.72772 * 21 18 17 23 23 C 1.38236 * 120.00343 * 179.76414 * 22 21 18 24 24 C 1.38238 * 119.99510 * 0.50926 * 23 22 21 25 25 C 1.38238 * 120.00053 * 359.74229 * 24 23 22 26 26 C 1.38231 * 119.99979 * 0.02562 * 25 24 23 27 27 H 0.96995 * 120.00408 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47203 * 59.99633 * 9 7 2 29 29 H 1.09001 * 109.47377 * 299.99774 * 9 7 2 30 30 H 1.08995 * 109.50755 * 62.46005 * 11 10 9 31 31 H 1.09001 * 109.50208 * 302.32312 * 11 10 9 32 32 H 1.09002 * 109.50885 * 63.08790 * 12 11 10 33 33 H 1.09005 * 109.50859 * 183.16685 * 12 11 10 34 34 H 1.08997 * 109.49015 * 181.41363 * 14 13 12 35 35 H 1.09007 * 109.49156 * 61.30527 * 14 13 12 36 36 H 1.08997 * 109.47258 * 182.83980 * 17 15 10 37 37 H 1.08994 * 109.47104 * 302.84428 * 17 15 10 38 38 H 0.96706 * 113.99772 * 299.99842 * 20 18 17 39 39 H 1.08005 * 120.00250 * 0.02562 * 22 21 18 40 40 H 1.07999 * 120.00387 * 180.23273 * 23 22 21 41 41 H 1.07996 * 119.99810 * 179.72635 * 24 23 22 42 42 H 1.07997 * 119.99911 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.00148 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 2.9786 -3.6480 1.2508 12 6 3.9996 -4.7868 1.1839 13 8 3.3172 -6.0194 0.9381 14 6 2.5542 -6.0227 -0.2725 15 6 1.5187 -4.8963 -0.2204 16 1 0.8211 -5.0808 0.5966 17 6 0.7529 -4.8436 -1.5439 18 6 1.7406 -4.6576 -2.6975 19 1 2.4983 -5.4401 -2.6569 20 8 2.3695 -3.3794 -2.5848 21 6 1.0027 -4.7406 -4.0089 22 6 0.3837 -3.6180 -4.5259 23 6 -0.2890 -3.6928 -5.7312 24 6 -0.3516 -4.8930 -6.4143 25 6 0.2630 -6.0169 -5.8948 26 6 0.9398 -5.9408 -4.6919 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.3044 -3.8126 2.0913 31 1 3.4994 -2.6994 1.3813 32 1 4.7066 -4.5949 0.3768 33 1 4.5364 -4.8504 2.1305 34 1 2.0453 -6.9806 -0.3790 35 1 3.2193 -5.8667 -1.1220 36 1 0.2031 -5.7744 -1.6829 37 1 0.0536 -4.0077 -1.5260 38 1 1.7537 -2.6342 -2.6134 39 1 0.4292 -2.6812 -3.9902 40 1 -0.7695 -2.8148 -6.1370 41 1 -0.8810 -4.9526 -7.3538 42 1 0.2137 -6.9546 -6.4283 43 1 1.4196 -6.8190 -4.2857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268686924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:17 Heat of formation + Delta-G solvation = -76.271093 kcal Electronic energy + Delta-G solvation = -24435.554856 eV Core-core repulsion = 21059.091532 eV Total energy + Delta-G solvation = -3376.463323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09781 -40.04429 -37.84102 -36.54447 -34.67030 -33.62087 -32.13687 -31.67108 -30.18628 -28.69113 -26.99339 -25.69231 -23.64023 -23.44887 -23.15593 -22.04212 -20.38609 -18.57213 -18.35748 -17.38523 -17.28270 -16.61840 -16.56612 -16.34950 -16.21833 -15.65864 -15.44780 -15.29759 -14.71164 -14.59909 -14.46792 -14.17776 -14.01963 -13.63675 -13.53482 -12.99239 -12.84410 -12.68418 -12.56540 -12.55503 -12.29742 -12.15436 -12.02432 -11.89141 -11.65873 -11.29590 -11.12428 -10.71341 -10.55277 -10.31969 -9.78808 -9.57501 -8.87998 -8.16560 -6.23673 0.46391 0.53230 1.40298 1.42660 1.54822 2.41923 2.87831 2.95631 3.14868 3.23442 3.66185 3.79513 3.87562 4.01322 4.12360 4.17454 4.20644 4.24629 4.32771 4.33978 4.43853 4.55810 4.58160 4.69213 4.73247 4.77349 4.86638 4.95920 5.01370 5.06005 5.10665 5.14811 5.21492 5.30514 5.35644 5.60261 5.65059 5.70739 5.76222 6.10143 6.15277 6.19846 6.36811 6.68694 6.92301 6.96635 7.45265 8.93951 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.006403 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.916777 B = 4371.876709 C = 6288.410976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.214 3.786 10 N -0.505 5.505 11 C 0.025 3.975 12 C 0.073 3.927 13 O -0.400 6.400 14 C 0.072 3.928 15 C 0.048 3.952 16 H 0.017 0.983 17 C -0.131 4.131 18 C 0.159 3.841 19 H 0.113 0.887 20 O -0.542 6.542 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.121 4.121 26 C -0.119 4.119 27 H 0.261 0.739 28 H 0.024 0.976 29 H -0.059 1.059 30 H 0.009 0.991 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.369 0.631 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.145 0.855 42 H 0.150 0.850 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.885 -13.458 -9.217 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.192 4.192 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.088 3.912 10 N -0.230 5.230 11 C -0.104 4.104 12 C -0.004 4.004 13 O -0.319 6.319 14 C -0.005 4.005 15 C -0.061 4.061 16 H 0.035 0.965 17 C -0.169 4.169 18 C 0.099 3.901 19 H 0.131 0.869 20 O -0.347 6.347 21 C -0.123 4.123 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.139 4.139 26 C -0.137 4.137 27 H 0.070 0.930 28 H 0.042 0.958 29 H -0.041 1.041 30 H 0.027 0.973 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.217 0.783 39 H 0.121 0.879 40 H 0.148 0.852 41 H 0.163 0.837 42 H 0.168 0.832 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.628 -13.797 -9.440 16.923 hybrid contribution -1.331 1.991 0.873 2.549 sum 1.297 -11.807 -8.567 14.645 Atomic orbital electron populations 1.70080 1.07466 1.27455 1.52489 1.25746 0.95532 1.02562 0.95319 0.85473 0.79083 0.79476 0.77394 1.19045 1.20597 1.21071 1.21377 0.93353 0.90742 1.48713 0.92262 1.19393 0.89959 0.88662 0.93174 1.62360 1.26051 1.01807 1.32814 1.22670 0.96841 1.00218 0.90628 1.22699 0.93100 0.82158 1.02398 1.87895 1.65507 1.35559 1.42960 1.22892 0.92524 0.97958 0.87093 1.22272 0.95385 0.91976 0.96474 0.96492 1.22251 0.98016 1.02772 0.93889 1.20749 0.93361 0.87608 0.88362 0.86926 1.86639 1.37532 1.14640 1.95909 1.20837 0.98936 0.94695 0.97872 1.21059 0.98578 0.98310 0.97156 1.21349 0.99285 0.99188 0.94896 1.21477 0.99879 0.92553 1.00704 1.21491 0.97120 0.99517 0.95773 1.21266 0.99835 0.97034 0.95559 0.92977 0.95782 1.04109 0.97280 0.90548 0.92188 0.86848 0.86447 0.91511 0.88807 0.93148 0.78319 0.87876 0.85208 0.83728 0.83201 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.50 -27.57 8.48 25.60 0.22 -27.35 16 8 H 0.06 3.26 7.09 -2.91 -0.02 3.24 16 9 C 0.21 10.98 3.64 85.56 0.31 11.29 16 10 N -0.51 -21.28 3.03 -874.56 -2.65 -23.93 16 11 C 0.03 1.00 5.45 86.31 0.47 1.47 16 12 C 0.07 2.31 7.00 72.01 0.50 2.82 16 13 O -0.40 -12.87 10.83 -148.98 -1.61 -14.49 16 14 C 0.07 2.08 5.97 72.01 0.43 2.51 16 15 C 0.05 1.71 2.28 44.93 0.10 1.81 16 16 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 17 C -0.13 -4.19 4.47 30.60 0.14 -4.06 16 18 C 0.16 4.82 2.94 29.85 0.09 4.91 16 19 H 0.11 3.06 5.92 -2.39 -0.01 3.04 16 20 O -0.54 -20.90 10.98 -148.98 -1.64 -22.53 16 21 C -0.12 -3.44 5.00 -19.87 -0.10 -3.54 16 22 C -0.13 -3.99 9.33 22.27 0.21 -3.78 16 23 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 24 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 25 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 26 C -0.12 -2.63 9.68 22.27 0.22 -2.42 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.02 1.29 4.69 -2.39 -0.01 1.27 16 29 H -0.06 -3.45 8.13 -2.39 -0.02 -3.47 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.08 3.24 6.77 -2.39 -0.02 3.23 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 34 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.07 1.88 6.09 -2.38 -0.01 1.86 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.05 1.93 6.03 -2.39 -0.01 1.92 16 38 H 0.37 15.33 6.04 -74.05 -0.45 14.88 16 39 H 0.10 3.45 6.62 -2.91 -0.02 3.43 16 40 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 41 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 42 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 43 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -65.26 335.60 0.69 -64.57 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.56 Total: 27.97 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 3.72 Total: -23.09 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -2.37 Total: -78.56 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -3.25 Total: -37.02 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -65.26 0.69 -64.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268686924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.703 kcal (2) G-P(sol) polarization free energy of solvation -65.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds