Wall clock time and date at job start Tue Mar 31 2020 07:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47399 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46962 * 300.00182 * 3 2 1 6 6 H 1.48503 * 109.47062 * 60.00084 * 3 2 1 7 7 C 1.37875 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00403 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99899 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47508 * 180.02562 * 9 7 2 11 11 C 1.47013 * 110.99759 * 296.61502 * 10 9 7 12 12 C 1.53096 * 109.25859 * 177.60362 * 11 10 9 13 13 O 1.43021 * 109.25466 * 56.85155 * 12 11 10 14 14 C 1.43021 * 113.73733 * 301.32600 * 13 12 11 15 15 C 1.47013 * 111.00268 * 172.97945 * 10 9 7 16 16 H 1.09000 * 109.54253 * 62.43104 * 15 10 9 17 17 C 1.52999 * 109.50481 * 302.32792 * 15 10 9 18 18 C 1.53000 * 109.47356 * 296.91091 * 17 15 10 19 19 H 1.08999 * 109.47193 * 305.49446 * 18 17 15 20 20 O 1.42901 * 109.46945 * 65.49010 * 18 17 15 21 21 C 1.50694 * 109.47407 * 185.49182 * 18 17 15 22 22 C 1.38238 * 120.00246 * 100.00118 * 21 18 17 23 23 C 1.38230 * 120.00035 * 180.02562 * 22 21 18 24 24 C 1.38227 * 120.00222 * 359.95612 * 23 22 21 25 25 C 1.38230 * 120.00240 * 0.27795 * 24 23 22 26 26 C 1.38229 * 120.00190 * 280.02272 * 21 18 17 27 27 H 0.97006 * 120.00238 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47529 * 60.00065 * 9 7 2 29 29 H 1.09010 * 109.47257 * 300.00123 * 9 7 2 30 30 H 1.09000 * 109.50863 * 57.67113 * 11 10 9 31 31 H 1.09000 * 109.54164 * 297.56119 * 11 10 9 32 32 H 1.09001 * 109.50746 * 296.91747 * 12 11 10 33 33 H 1.08994 * 109.54456 * 176.80685 * 12 11 10 34 34 H 1.09002 * 109.50786 * 298.74101 * 14 13 12 35 35 H 1.08991 * 109.54242 * 178.62858 * 14 13 12 36 36 H 1.09005 * 109.47050 * 176.91661 * 17 15 10 37 37 H 1.08999 * 109.47297 * 56.91456 * 17 15 10 38 38 H 0.96703 * 113.99946 * 60.00424 * 20 18 17 39 39 H 1.08008 * 119.99683 * 359.97438 * 22 21 18 40 40 H 1.08004 * 119.99510 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.00344 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.00553 * 179.72508 * 25 24 23 43 43 H 1.08004 * 119.99752 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 3.0153 -3.6166 -1.2276 12 6 4.0343 -4.7571 -1.1594 13 8 3.3446 -5.9949 -0.9650 14 6 2.5466 -6.0291 0.2215 15 6 1.5127 -4.9014 0.1672 16 1 0.8392 -5.0651 -0.6741 17 6 0.7087 -4.8823 1.4688 18 6 1.6628 -4.7328 2.6555 19 1 2.4187 -5.5170 2.6150 20 8 2.2990 -3.4546 2.5970 21 6 0.8866 -4.8492 3.9419 22 6 0.8852 -6.0406 4.6430 23 6 0.1727 -6.1475 5.8228 24 6 -0.5375 -5.0628 6.3020 25 6 -0.5401 -3.8729 5.5985 26 6 0.1756 -3.7648 4.4207 27 1 -0.4851 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 3.5395 -2.6652 -1.3185 31 1 2.3670 -3.7590 -2.0921 32 1 4.7169 -4.5861 -0.3269 33 1 4.5991 -4.7976 -2.0907 34 1 3.1860 -5.8950 1.0941 35 1 2.0350 -6.9890 0.2891 36 1 0.1519 -5.8144 1.5656 37 1 0.0130 -4.0433 1.4539 38 1 1.6852 -2.7079 2.6285 39 1 1.4401 -6.8882 4.2685 40 1 0.1714 -7.0785 6.3702 41 1 -1.0938 -5.1461 7.2239 42 1 -1.0987 -3.0267 5.9706 43 1 0.1761 -2.8341 3.8726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268686926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:22 Heat of formation + Delta-G solvation = -57.808440 kcal Electronic energy + Delta-G solvation = -24421.646873 eV Core-core repulsion = 21045.984150 eV Total energy + Delta-G solvation = -3375.662723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80598 -38.85777 -36.56293 -34.95700 -32.82198 -32.03381 -31.01960 -30.71316 -28.49142 -27.24933 -25.26749 -24.43994 -22.46973 -21.83708 -21.78136 -20.88208 -18.89630 -17.28849 -16.55633 -15.93320 -15.83945 -15.51378 -15.13497 -15.05910 -14.50149 -14.39125 -14.15601 -13.82343 -13.48913 -13.19697 -13.17841 -12.83166 -12.54176 -12.18777 -11.96581 -11.49804 -11.42767 -11.22860 -11.08519 -10.95741 -10.78947 -10.74859 -10.65840 -10.27013 -10.12957 -9.82386 -9.32616 -9.15611 -8.90871 -8.82141 -8.57372 -8.42181 -7.14335 -6.06168 -4.06395 1.44341 1.49778 3.29027 3.37433 3.42427 3.87206 4.25481 4.40045 4.76905 4.81873 4.95105 5.06218 5.15658 5.19333 5.21192 5.30947 5.44937 5.51764 5.55969 5.61467 5.68201 5.76492 5.82740 5.91101 5.93341 6.02930 6.08388 6.14424 6.22302 6.32519 6.45359 6.54062 6.57226 6.61263 6.65278 6.82667 7.09485 7.22090 7.33184 7.54452 7.79028 8.04059 8.18882 8.42827 8.54431 9.02881 9.58206 11.04332 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.006309 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.823914 B = 4436.943113 C = 6324.445017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.065 0.935 9 C 0.195 3.805 10 N -0.506 5.506 11 C 0.029 3.971 12 C 0.063 3.937 13 O -0.395 6.395 14 C 0.068 3.932 15 C 0.053 3.947 16 H 0.035 0.965 17 C -0.141 4.141 18 C 0.154 3.846 19 H 0.098 0.902 20 O -0.522 6.522 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.117 4.117 26 C -0.108 4.108 27 H 0.260 0.740 28 H -0.016 1.016 29 H 0.033 0.967 30 H 0.093 0.907 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.377 0.623 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -11.644 7.565 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.538 4.538 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.232 5.232 11 C -0.100 4.100 12 C -0.014 4.014 13 O -0.313 6.313 14 C -0.009 4.009 15 C -0.057 4.057 16 H 0.053 0.947 17 C -0.179 4.179 18 C 0.094 3.906 19 H 0.115 0.885 20 O -0.328 6.328 21 C -0.108 4.108 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.126 4.126 27 H 0.069 0.931 28 H 0.002 0.998 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.226 0.774 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.393 -11.968 7.802 14.354 hybrid contribution -0.964 1.445 -0.464 1.798 sum 0.429 -10.523 7.337 12.836 Atomic orbital electron populations 1.69961 1.06001 1.26605 1.51418 1.24965 0.94801 0.99208 0.95616 0.86490 0.80193 0.83621 0.77411 1.19664 1.21310 1.21107 1.21180 0.93572 0.89681 1.49363 0.91726 1.19750 0.90157 0.87443 0.95655 1.62404 1.25193 1.01219 1.34399 1.22610 0.96324 0.99314 0.91745 1.22725 0.94190 0.83537 1.00918 1.87875 1.63515 1.36061 1.43891 1.22753 0.92633 0.97587 0.87951 1.22104 0.94700 0.92627 0.96278 0.94675 1.22342 0.98406 1.02714 0.94436 1.20678 0.92985 0.88828 0.88078 0.88454 1.86689 1.36585 1.13460 1.96083 1.20940 0.97911 0.93959 0.98024 1.20984 0.99855 0.97252 0.95332 1.21075 0.98007 0.98536 0.96563 1.21096 1.00102 0.93577 0.99953 1.21142 0.99296 0.97729 0.95385 1.21070 0.96347 0.98819 0.96320 0.93061 0.99822 0.94915 0.88928 0.95732 0.92633 0.89628 0.92207 0.89846 0.91649 0.90024 0.77388 0.86252 0.86439 0.86517 0.86175 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.50 -13.17 8.47 -34.44 -0.29 -13.46 16 8 H 0.06 1.73 6.93 -52.49 -0.36 1.36 16 9 C 0.19 4.71 3.69 -4.97 -0.02 4.70 16 10 N -0.51 -10.35 3.05 -227.77 -0.69 -11.04 16 11 C 0.03 0.56 5.44 -3.71 -0.02 0.54 16 12 C 0.06 1.05 7.01 37.21 0.26 1.31 16 13 O -0.39 -6.79 10.83 -35.23 -0.38 -7.18 16 14 C 0.07 1.06 5.96 37.21 0.22 1.28 16 15 C 0.05 0.93 2.28 -67.60 -0.15 0.77 16 16 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.14 -2.24 4.47 -26.73 -0.12 -2.36 16 18 C 0.15 2.37 2.93 -27.89 -0.08 2.29 16 19 H 0.10 1.42 5.86 -51.93 -0.30 1.11 16 20 O -0.52 -9.74 11.05 -35.23 -0.39 -10.12 16 21 C -0.11 -1.54 4.97 -104.63 -0.52 -2.06 16 22 C -0.12 -1.44 9.67 -39.58 -0.38 -1.83 16 23 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 24 C -0.13 -1.49 10.05 -39.59 -0.40 -1.89 16 25 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 26 C -0.11 -1.56 9.32 -39.58 -0.37 -1.93 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 29 H 0.03 0.81 4.69 -51.92 -0.24 0.57 16 30 H 0.09 1.91 6.62 -51.93 -0.34 1.57 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.93 6.08 -51.93 -0.32 0.61 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.47 6.06 -51.93 -0.31 1.16 16 38 H 0.38 7.24 6.12 45.56 0.28 7.52 16 39 H 0.12 1.25 8.04 -52.48 -0.42 0.83 16 40 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.13 1.89 6.79 -52.48 -0.36 1.54 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -29.34 335.52 -9.21 -38.54 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.75 Total: 8.42 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.77 Total: -14.95 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.04 Total: -35.82 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.77 Total: -17.30 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.34 -9.21 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268686926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.264 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds