Wall clock time and date at job start Tue Mar 31 2020 07:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47399 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46962 * 300.00182 * 3 2 1 6 6 H 1.48503 * 109.47062 * 60.00084 * 3 2 1 7 7 C 1.37875 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00403 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99899 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47508 * 180.02562 * 9 7 2 11 11 C 1.47013 * 110.99759 * 296.61502 * 10 9 7 12 12 C 1.53096 * 109.25859 * 177.60362 * 11 10 9 13 13 O 1.43021 * 109.25466 * 56.85155 * 12 11 10 14 14 C 1.43021 * 113.73733 * 301.32600 * 13 12 11 15 15 C 1.47013 * 111.00268 * 172.97945 * 10 9 7 16 16 H 1.09000 * 109.54253 * 62.43104 * 15 10 9 17 17 C 1.52999 * 109.50481 * 302.32792 * 15 10 9 18 18 C 1.53000 * 109.47356 * 296.91091 * 17 15 10 19 19 H 1.08999 * 109.47193 * 305.49446 * 18 17 15 20 20 O 1.42901 * 109.46945 * 65.49010 * 18 17 15 21 21 C 1.50694 * 109.47407 * 185.49182 * 18 17 15 22 22 C 1.38238 * 120.00246 * 100.00118 * 21 18 17 23 23 C 1.38230 * 120.00035 * 180.02562 * 22 21 18 24 24 C 1.38227 * 120.00222 * 359.95612 * 23 22 21 25 25 C 1.38230 * 120.00240 * 0.27795 * 24 23 22 26 26 C 1.38229 * 120.00190 * 280.02272 * 21 18 17 27 27 H 0.97006 * 120.00238 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47529 * 60.00065 * 9 7 2 29 29 H 1.09010 * 109.47257 * 300.00123 * 9 7 2 30 30 H 1.09000 * 109.50863 * 57.67113 * 11 10 9 31 31 H 1.09000 * 109.54164 * 297.56119 * 11 10 9 32 32 H 1.09001 * 109.50746 * 296.91747 * 12 11 10 33 33 H 1.08994 * 109.54456 * 176.80685 * 12 11 10 34 34 H 1.09002 * 109.50786 * 298.74101 * 14 13 12 35 35 H 1.08991 * 109.54242 * 178.62858 * 14 13 12 36 36 H 1.09005 * 109.47050 * 176.91661 * 17 15 10 37 37 H 1.08999 * 109.47297 * 56.91456 * 17 15 10 38 38 H 0.96703 * 113.99946 * 60.00424 * 20 18 17 39 39 H 1.08008 * 119.99683 * 359.97438 * 22 21 18 40 40 H 1.08004 * 119.99510 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.00344 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.00553 * 179.72508 * 25 24 23 43 43 H 1.08004 * 119.99752 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 3.0153 -3.6166 -1.2276 12 6 4.0343 -4.7571 -1.1594 13 8 3.3446 -5.9949 -0.9650 14 6 2.5466 -6.0291 0.2215 15 6 1.5127 -4.9014 0.1672 16 1 0.8392 -5.0651 -0.6741 17 6 0.7087 -4.8823 1.4688 18 6 1.6628 -4.7328 2.6555 19 1 2.4187 -5.5170 2.6150 20 8 2.2990 -3.4546 2.5970 21 6 0.8866 -4.8492 3.9419 22 6 0.8852 -6.0406 4.6430 23 6 0.1727 -6.1475 5.8228 24 6 -0.5375 -5.0628 6.3020 25 6 -0.5401 -3.8729 5.5985 26 6 0.1756 -3.7648 4.4207 27 1 -0.4851 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 3.5395 -2.6652 -1.3185 31 1 2.3670 -3.7590 -2.0921 32 1 4.7169 -4.5861 -0.3269 33 1 4.5991 -4.7976 -2.0907 34 1 3.1860 -5.8950 1.0941 35 1 2.0350 -6.9890 0.2891 36 1 0.1519 -5.8144 1.5656 37 1 0.0130 -4.0433 1.4539 38 1 1.6852 -2.7079 2.6285 39 1 1.4401 -6.8882 4.2685 40 1 0.1714 -7.0785 6.3702 41 1 -1.0938 -5.1461 7.2239 42 1 -1.0987 -3.0267 5.9706 43 1 0.1761 -2.8341 3.8726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268686926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:21 Heat of formation + Delta-G solvation = -76.678742 kcal Electronic energy + Delta-G solvation = -24422.465151 eV Core-core repulsion = 21045.984150 eV Total energy + Delta-G solvation = -3376.481000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.10102 -40.04739 -37.84455 -36.55535 -34.67065 -33.61811 -32.14165 -31.68635 -30.18292 -28.68635 -27.00386 -25.69469 -23.64115 -23.48444 -23.13689 -22.04549 -20.38303 -18.58455 -18.33713 -17.37743 -17.29189 -16.63099 -16.57731 -16.34744 -16.22229 -15.66153 -15.43686 -15.30070 -14.73965 -14.58716 -14.45308 -14.17779 -14.02095 -13.65631 -13.52443 -12.99896 -12.84679 -12.68400 -12.58301 -12.56774 -12.31116 -12.15736 -12.01305 -11.90054 -11.65875 -11.29845 -11.11167 -10.71204 -10.55357 -10.31877 -9.79061 -9.58706 -8.88108 -8.17138 -6.24236 0.45979 0.52935 1.40233 1.42500 1.54639 2.41685 2.87653 2.95464 3.14646 3.23353 3.65542 3.79448 3.87363 4.01231 4.12193 4.17225 4.20656 4.24846 4.32492 4.34038 4.43936 4.55372 4.57940 4.69391 4.72798 4.77316 4.86466 4.95908 5.01426 5.05998 5.10715 5.14613 5.21401 5.30288 5.36098 5.60046 5.64784 5.69961 5.76038 6.09271 6.14971 6.20194 6.36142 6.68757 6.91596 6.95837 7.44739 8.93538 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.006309 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.823914 B = 4436.943113 C = 6324.445017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.215 3.785 10 N -0.505 5.505 11 C 0.025 3.975 12 C 0.073 3.927 13 O -0.401 6.401 14 C 0.072 3.928 15 C 0.048 3.952 16 H 0.017 0.983 17 C -0.132 4.132 18 C 0.159 3.841 19 H 0.113 0.887 20 O -0.542 6.542 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.132 4.132 27 H 0.262 0.738 28 H -0.059 1.059 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.009 0.991 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.368 0.632 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.130 0.870 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 -13.649 9.048 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.192 4.192 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.089 3.911 10 N -0.230 5.230 11 C -0.104 4.104 12 C -0.004 4.004 13 O -0.319 6.319 14 C -0.005 4.005 15 C -0.061 4.061 16 H 0.035 0.965 17 C -0.169 4.169 18 C 0.099 3.901 19 H 0.131 0.869 20 O -0.347 6.347 21 C -0.123 4.123 22 C -0.136 4.136 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.150 4.150 27 H 0.070 0.930 28 H -0.041 1.041 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.085 0.915 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.216 0.784 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.148 0.852 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.414 -13.998 9.285 16.970 hybrid contribution -1.328 2.001 -0.895 2.563 sum 1.086 -11.997 8.390 14.679 Atomic orbital electron populations 1.70079 1.07471 1.27467 1.52419 1.25748 0.95547 1.02587 0.95272 0.85468 0.79088 0.79443 0.77405 1.19018 1.21046 1.20588 1.21393 0.93377 0.90801 1.48845 0.92215 1.19382 0.89993 0.88612 0.93139 1.62360 1.24357 1.01571 1.34741 1.22668 0.96655 1.00283 0.90754 1.22706 0.93039 0.81989 1.02622 1.87876 1.63603 1.35861 1.44591 1.22877 0.91970 0.97897 0.87719 1.22275 0.95350 0.91981 0.96512 0.96515 1.22249 0.97951 1.02770 0.93979 1.20754 0.93186 0.87590 0.88527 0.86932 1.86639 1.37273 1.14511 1.96305 1.20823 0.98623 0.94941 0.97956 1.21280 0.99908 0.96960 0.95495 1.21490 0.96683 0.99664 0.96075 1.21474 0.99689 0.92836 1.00551 1.21349 0.99283 0.99090 0.95002 1.21057 0.98048 0.98472 0.97458 0.92964 1.04134 0.95775 0.90486 0.97314 0.92175 0.86842 0.91502 0.86474 0.88883 0.93125 0.78351 0.83882 0.83199 0.83712 0.85201 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.51 -27.73 8.47 25.60 0.22 -27.51 16 8 H 0.06 3.28 6.93 -2.91 -0.02 3.26 16 9 C 0.21 11.02 3.69 85.56 0.32 11.33 16 10 N -0.51 -21.30 3.05 -874.54 -2.67 -23.97 16 11 C 0.03 1.00 5.44 86.31 0.47 1.47 16 12 C 0.07 2.32 7.01 72.01 0.50 2.82 16 13 O -0.40 -12.91 10.83 -148.98 -1.61 -14.53 16 14 C 0.07 2.09 5.96 72.01 0.43 2.51 16 15 C 0.05 1.71 2.28 44.93 0.10 1.81 16 16 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 17 C -0.13 -4.21 4.47 30.59 0.14 -4.07 16 18 C 0.16 4.81 2.93 29.85 0.09 4.90 16 19 H 0.11 3.04 5.86 -2.39 -0.01 3.03 16 20 O -0.54 -20.84 11.05 -148.98 -1.65 -22.48 16 21 C -0.12 -3.43 4.97 -19.87 -0.10 -3.53 16 22 C -0.12 -2.62 9.67 22.27 0.22 -2.41 16 23 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 24 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 25 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 26 C -0.13 -3.95 9.32 22.27 0.21 -3.74 16 27 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 28 H -0.06 -3.47 8.14 -2.39 -0.02 -3.49 16 29 H 0.02 1.29 4.69 -2.38 -0.01 1.28 16 30 H 0.08 3.28 6.62 -2.39 -0.02 3.26 16 31 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.07 1.88 6.08 -2.39 -0.01 1.87 16 35 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.05 1.94 6.06 -2.39 -0.01 1.92 16 38 H 0.37 15.24 6.12 -74.05 -0.45 14.79 16 39 H 0.14 2.42 8.04 -2.91 -0.02 2.40 16 40 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 43 H 0.10 3.42 6.79 -2.91 -0.02 3.40 16 Total: -1.00 -65.29 335.52 0.66 -64.63 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.56 Total: 27.94 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 3.72 Total: -23.09 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -2.38 Total: -78.59 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -3.26 Total: -37.01 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.29 0.66 -64.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268686926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.047 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds