Wall clock time and date at job start Tue Mar 31 2020 07:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86796 * 120.00143 * 2 1 4 4 H 1.48502 * 109.47221 * 270.00390 * 3 2 1 5 5 H 1.48502 * 109.47108 * 29.99979 * 3 2 1 6 6 H 1.48495 * 109.47211 * 149.99943 * 3 2 1 7 7 C 1.37880 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99763 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46605 * 179.97438 * 9 7 2 11 11 C 1.47008 * 111.00212 * 294.50493 * 10 9 7 12 12 C 1.53093 * 109.25762 * 182.39227 * 11 10 9 13 13 O 1.43016 * 109.29696 * 303.13171 * 12 11 10 14 14 C 1.43092 * 113.68988 * 58.64380 * 13 12 11 15 15 C 1.47015 * 110.99704 * 58.14081 * 10 9 7 16 16 H 1.08997 * 109.51126 * 297.53806 * 15 10 9 17 17 C 1.53006 * 109.50841 * 57.67312 * 15 10 9 18 18 C 1.52994 * 109.47192 * 184.69287 * 17 15 10 19 19 H 1.08999 * 109.46901 * 304.30599 * 18 17 15 20 20 O 1.42899 * 109.47284 * 64.30173 * 18 17 15 21 21 C 1.50694 * 109.47242 * 184.30779 * 18 17 15 22 22 C 1.38243 * 119.99769 * 279.72507 * 21 18 17 23 23 C 1.38234 * 119.99447 * 179.76624 * 22 21 18 24 24 C 1.38230 * 120.00735 * 0.50682 * 23 22 21 25 25 C 1.38236 * 119.99569 * 359.74723 * 24 23 22 26 26 C 1.38230 * 120.00552 * 99.99810 * 21 18 17 27 27 H 0.96992 * 119.99517 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47053 * 60.00441 * 9 7 2 29 29 H 1.08992 * 109.47316 * 299.99843 * 9 7 2 30 30 H 1.08997 * 109.50770 * 62.46109 * 11 10 9 31 31 H 1.08999 * 109.54316 * 302.34983 * 11 10 9 32 32 H 1.09000 * 109.50802 * 63.08705 * 12 11 10 33 33 H 1.09003 * 109.51035 * 183.17275 * 12 11 10 34 34 H 1.09000 * 109.49765 * 181.42202 * 14 13 12 35 35 H 1.09000 * 109.49532 * 61.30163 * 14 13 12 36 36 H 1.09000 * 109.46587 * 304.69336 * 17 15 10 37 37 H 1.08997 * 109.47070 * 64.68573 * 17 15 10 38 38 H 0.96703 * 113.99679 * 54.15105 * 20 18 17 39 39 H 1.08000 * 119.99907 * 359.97438 * 22 21 18 40 40 H 1.08004 * 119.99640 * 180.23248 * 23 22 21 41 41 H 1.08000 * 120.00550 * 179.72664 * 24 23 22 42 42 H 1.08005 * 120.00267 * 179.97438 * 25 24 23 43 43 H 1.08011 * 119.99526 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0018 11 6 2.9798 -3.6457 -1.2512 12 6 3.9171 -4.8560 -1.2355 13 8 4.7576 -4.7879 -0.0803 14 6 4.0358 -4.7572 1.1548 15 6 3.0995 -3.5459 1.1633 16 1 3.6888 -2.6302 1.1157 17 6 2.2671 -3.5526 2.4471 18 6 3.1886 -3.3622 3.6535 19 1 3.9621 -4.1302 3.6445 20 8 3.7982 -2.0714 3.5883 21 6 2.3842 -3.4744 4.9228 22 6 1.6432 -2.3960 5.3690 23 6 0.9015 -2.5006 6.5308 24 6 0.9089 -3.6798 7.2520 25 6 1.6540 -4.7564 6.8085 26 6 2.3916 -4.6537 5.6439 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 3.5671 -2.7316 -1.3375 31 1 2.2998 -3.7230 -2.0996 32 1 3.3279 -5.7724 -1.2033 33 1 4.5333 -4.8510 -2.1347 34 1 4.7381 -4.6802 1.9848 35 1 3.4498 -5.6707 1.2565 36 1 1.5406 -2.7408 2.4132 37 1 1.7441 -4.5047 2.5360 38 1 3.1682 -1.3429 3.5022 39 1 1.6412 -1.4731 4.8082 40 1 0.3196 -1.6593 6.8775 41 1 0.3328 -3.7600 8.1620 42 1 1.6602 -5.6777 7.3721 43 1 2.9744 -5.4946 5.2978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268686928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:26 Heat of formation + Delta-G solvation = -69.089632 kcal Electronic energy + Delta-G solvation = -24241.332062 eV Core-core repulsion = 20865.180150 eV Total energy + Delta-G solvation = -3376.151912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76269 -38.90564 -36.75574 -35.30257 -32.66313 -32.16316 -31.06526 -30.77817 -28.51229 -27.26542 -25.08309 -24.42471 -22.51485 -22.14803 -21.79368 -20.64872 -19.23710 -17.37171 -16.37529 -16.10468 -15.81603 -15.68772 -15.31503 -15.13149 -14.54948 -14.42979 -14.08769 -13.89912 -13.48962 -13.23522 -13.09730 -12.86660 -12.76845 -12.42492 -11.83675 -11.64459 -11.36393 -11.19888 -11.06339 -10.98761 -10.93537 -10.71331 -10.45390 -10.26862 -10.15507 -9.84541 -9.68110 -9.62092 -8.92631 -8.85344 -8.61829 -8.47425 -7.25713 -6.08573 -4.17679 1.39907 1.46316 3.23722 3.31643 3.35977 3.82084 4.29057 4.36328 4.64283 4.79650 4.90904 4.95390 5.04434 5.16464 5.21241 5.34734 5.48448 5.49479 5.55836 5.63763 5.67549 5.74886 5.80713 5.87169 5.94928 6.06516 6.08460 6.13595 6.23383 6.44134 6.50643 6.55883 6.62309 6.67495 6.79374 6.90469 7.04877 7.16252 7.47402 7.57777 7.84092 7.94430 7.95614 8.17793 8.22980 8.92866 9.49638 10.96161 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011715 B = 0.006304 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.581471 B = 4440.259010 C = 6071.433689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.185 3.815 10 N -0.537 5.537 11 C 0.026 3.974 12 C 0.063 3.937 13 O -0.391 6.391 14 C 0.066 3.934 15 C 0.062 3.938 16 H 0.068 0.932 17 C -0.134 4.134 18 C 0.146 3.854 19 H 0.101 0.899 20 O -0.554 6.554 21 C -0.104 4.104 22 C -0.106 4.106 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.114 4.114 27 H 0.262 0.738 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.380 0.620 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 -8.845 9.473 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.712 3.288 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.059 3.941 10 N -0.262 5.262 11 C -0.103 4.103 12 C -0.014 4.014 13 O -0.310 6.310 14 C -0.011 4.011 15 C -0.048 4.048 16 H 0.085 0.915 17 C -0.172 4.172 18 C 0.086 3.914 19 H 0.118 0.882 20 O -0.360 6.360 21 C -0.105 4.105 22 C -0.124 4.124 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.132 4.132 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.228 0.772 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.657 -9.516 9.535 13.959 hybrid contribution -0.149 2.135 -0.137 2.144 sum 3.508 -7.381 9.399 12.455 Atomic orbital electron populations 1.69948 1.05978 1.26834 1.50140 1.24937 0.94693 0.99026 0.94950 0.86705 0.80089 0.83669 0.78310 1.20701 1.21201 1.19666 1.21725 0.93374 0.91866 1.51612 0.92360 1.19804 0.90798 0.85490 0.97962 1.62758 1.16422 1.46747 1.00266 1.22537 0.96257 0.97267 0.94199 1.22696 0.92867 0.97769 0.88097 1.87921 1.33612 1.94993 1.14436 1.22819 0.94625 0.97487 0.86196 1.21955 0.93804 0.97841 0.91161 0.91456 1.22246 0.98535 1.03892 0.92505 1.20878 0.93985 0.86505 0.89988 0.88172 1.86541 1.37910 1.15439 1.96121 1.20695 0.98069 0.94270 0.97418 1.20998 0.96233 0.98686 0.96473 1.21128 0.99184 0.97876 0.95396 1.21111 0.99793 0.93654 0.99974 1.21085 0.97620 0.98606 0.96730 1.20977 0.99785 0.97256 0.95176 0.92824 0.95317 0.94595 0.93376 0.90796 0.93265 0.89558 0.89546 0.93367 0.89157 0.91252 0.77169 0.85882 0.86145 0.86414 0.86298 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 2 C 0.07 1.79 5.46 -17.81 -0.10 1.69 16 3 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.55 -14.27 7.66 -34.44 -0.26 -14.54 16 8 H 0.06 1.56 5.79 -52.49 -0.30 1.26 16 9 C 0.18 4.52 4.65 -4.97 -0.02 4.50 16 10 N -0.54 -11.14 4.75 -227.77 -1.08 -12.22 16 11 C 0.03 0.51 5.38 -3.72 -0.02 0.49 16 12 C 0.06 1.03 7.00 37.21 0.26 1.29 16 13 O -0.39 -7.02 10.83 -35.23 -0.38 -7.40 16 14 C 0.07 1.09 5.97 37.21 0.22 1.31 16 15 C 0.06 1.16 1.62 -67.59 -0.11 1.05 16 16 H 0.07 1.49 5.98 -51.93 -0.31 1.17 16 17 C -0.13 -2.28 4.14 -26.73 -0.11 -2.39 16 18 C 0.15 2.18 3.06 -27.89 -0.09 2.10 16 19 H 0.10 1.38 6.30 -51.93 -0.33 1.06 16 20 O -0.55 -9.23 12.56 -35.23 -0.44 -9.67 16 21 C -0.10 -1.46 4.97 -104.63 -0.52 -1.98 16 22 C -0.11 -1.48 9.34 -39.58 -0.37 -1.85 16 23 C -0.12 -1.47 10.05 -39.59 -0.40 -1.87 16 24 C -0.13 -1.45 10.05 -39.59 -0.40 -1.84 16 25 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.11 -1.41 9.67 -39.59 -0.38 -1.79 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 28 H 0.03 0.77 8.12 -51.93 -0.42 0.35 16 29 H 0.04 0.93 6.27 -51.93 -0.33 0.60 16 30 H 0.05 1.04 6.90 -51.93 -0.36 0.68 16 31 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.29 6.64 -51.93 -0.34 0.95 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.78 6.16 -51.93 -0.32 1.46 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.38 5.95 7.69 45.56 0.35 6.30 16 39 H 0.12 1.69 6.90 -52.49 -0.36 1.33 16 40 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.12 1.26 8.04 -52.48 -0.42 0.84 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -29.53 339.30 -9.43 -38.96 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.66 Total: 9.41 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.69 Total: -15.62 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.34 Total: -36.61 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.82 Total: -17.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.53 -9.43 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268686928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.130 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds