Wall clock time and date at job start Tue Mar 31 2020 07:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86796 * 120.00143 * 2 1 4 4 H 1.48502 * 109.47221 * 270.00390 * 3 2 1 5 5 H 1.48502 * 109.47108 * 29.99979 * 3 2 1 6 6 H 1.48495 * 109.47211 * 149.99943 * 3 2 1 7 7 C 1.37880 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99763 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46605 * 179.97438 * 9 7 2 11 11 C 1.47008 * 111.00212 * 294.50493 * 10 9 7 12 12 C 1.53093 * 109.25762 * 182.39227 * 11 10 9 13 13 O 1.43016 * 109.29696 * 303.13171 * 12 11 10 14 14 C 1.43092 * 113.68988 * 58.64380 * 13 12 11 15 15 C 1.47015 * 110.99704 * 58.14081 * 10 9 7 16 16 H 1.08997 * 109.51126 * 297.53806 * 15 10 9 17 17 C 1.53006 * 109.50841 * 57.67312 * 15 10 9 18 18 C 1.52994 * 109.47192 * 184.69287 * 17 15 10 19 19 H 1.08999 * 109.46901 * 304.30599 * 18 17 15 20 20 O 1.42899 * 109.47284 * 64.30173 * 18 17 15 21 21 C 1.50694 * 109.47242 * 184.30779 * 18 17 15 22 22 C 1.38243 * 119.99769 * 279.72507 * 21 18 17 23 23 C 1.38234 * 119.99447 * 179.76624 * 22 21 18 24 24 C 1.38230 * 120.00735 * 0.50682 * 23 22 21 25 25 C 1.38236 * 119.99569 * 359.74723 * 24 23 22 26 26 C 1.38230 * 120.00552 * 99.99810 * 21 18 17 27 27 H 0.96992 * 119.99517 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47053 * 60.00441 * 9 7 2 29 29 H 1.08992 * 109.47316 * 299.99843 * 9 7 2 30 30 H 1.08997 * 109.50770 * 62.46109 * 11 10 9 31 31 H 1.08999 * 109.54316 * 302.34983 * 11 10 9 32 32 H 1.09000 * 109.50802 * 63.08705 * 12 11 10 33 33 H 1.09003 * 109.51035 * 183.17275 * 12 11 10 34 34 H 1.09000 * 109.49765 * 181.42202 * 14 13 12 35 35 H 1.09000 * 109.49532 * 61.30163 * 14 13 12 36 36 H 1.09000 * 109.46587 * 304.69336 * 17 15 10 37 37 H 1.08997 * 109.47070 * 64.68573 * 17 15 10 38 38 H 0.96703 * 113.99679 * 54.15105 * 20 18 17 39 39 H 1.08000 * 119.99907 * 359.97438 * 22 21 18 40 40 H 1.08004 * 119.99640 * 180.23248 * 23 22 21 41 41 H 1.08000 * 120.00550 * 179.72664 * 24 23 22 42 42 H 1.08005 * 120.00267 * 179.97438 * 25 24 23 43 43 H 1.08011 * 119.99526 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0018 11 6 2.9798 -3.6457 -1.2512 12 6 3.9171 -4.8560 -1.2355 13 8 4.7576 -4.7879 -0.0803 14 6 4.0358 -4.7572 1.1548 15 6 3.0995 -3.5459 1.1633 16 1 3.6888 -2.6302 1.1157 17 6 2.2671 -3.5526 2.4471 18 6 3.1886 -3.3622 3.6535 19 1 3.9621 -4.1302 3.6445 20 8 3.7982 -2.0714 3.5883 21 6 2.3842 -3.4744 4.9228 22 6 1.6432 -2.3960 5.3690 23 6 0.9015 -2.5006 6.5308 24 6 0.9089 -3.6798 7.2520 25 6 1.6540 -4.7564 6.8085 26 6 2.3916 -4.6537 5.6439 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 3.5671 -2.7316 -1.3375 31 1 2.2998 -3.7230 -2.0996 32 1 3.3279 -5.7724 -1.2033 33 1 4.5333 -4.8510 -2.1347 34 1 4.7381 -4.6802 1.9848 35 1 3.4498 -5.6707 1.2565 36 1 1.5406 -2.7408 2.4132 37 1 1.7441 -4.5047 2.5360 38 1 3.1682 -1.3429 3.5022 39 1 1.6412 -1.4731 4.8082 40 1 0.3196 -1.6593 6.8775 41 1 0.3328 -3.7600 8.1620 42 1 1.6602 -5.6777 7.3721 43 1 2.9744 -5.4946 5.2978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268686928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:25 Heat of formation + Delta-G solvation = -89.614605 kcal Electronic energy + Delta-G solvation = -24242.222091 eV Core-core repulsion = 20865.180150 eV Total energy + Delta-G solvation = -3377.041941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.03907 -40.14367 -37.96801 -36.92839 -34.55937 -33.67465 -32.19261 -31.71830 -30.18183 -28.73039 -26.88756 -25.68686 -23.92820 -23.48904 -23.10590 -21.80096 -20.87106 -18.62415 -18.19389 -17.49080 -17.30594 -16.94061 -16.52798 -16.46797 -16.25369 -15.68907 -15.50786 -15.20193 -14.82060 -14.64685 -14.41480 -14.19925 -14.05167 -13.83953 -13.55892 -13.04913 -12.95894 -12.72008 -12.65278 -12.42022 -12.28568 -12.10138 -11.95724 -11.82831 -11.81996 -11.76910 -11.20932 -10.91471 -10.61682 -10.39751 -9.80284 -9.61779 -9.07359 -8.16845 -6.34379 0.43222 0.51779 1.33229 1.36058 1.45856 2.35513 2.83518 2.95617 3.08867 3.20673 3.57640 3.71581 3.88547 4.01309 4.12313 4.18683 4.23279 4.29847 4.31711 4.35397 4.39118 4.49657 4.58857 4.67870 4.70594 4.75083 4.87630 4.99091 5.08307 5.09271 5.14432 5.19310 5.27430 5.32674 5.38433 5.57898 5.63050 5.71053 5.74880 6.02681 6.12969 6.21088 6.21477 6.45731 6.65635 6.84552 7.36465 8.85574 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011715 B = 0.006304 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.581471 B = 4440.259010 C = 6071.433689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.021 3.979 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.545 4.545 8 H 0.049 0.951 9 C 0.201 3.799 10 N -0.535 5.535 11 C 0.023 3.977 12 C 0.070 3.930 13 O -0.403 6.403 14 C 0.070 3.930 15 C 0.064 3.936 16 H 0.032 0.968 17 C -0.120 4.120 18 C 0.154 3.846 19 H 0.118 0.882 20 O -0.568 6.568 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.119 4.119 27 H 0.264 0.736 28 H 0.000 1.000 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.379 0.621 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -10.543 10.771 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.584 4.584 8 H 0.067 0.933 9 C 0.074 3.926 10 N -0.259 5.259 11 C -0.106 4.106 12 C -0.007 4.007 13 O -0.322 6.322 14 C -0.006 4.006 15 C -0.045 4.045 16 H 0.050 0.950 17 C -0.158 4.158 18 C 0.095 3.905 19 H 0.136 0.864 20 O -0.375 6.375 21 C -0.123 4.123 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.137 4.137 27 H 0.073 0.927 28 H 0.018 0.982 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.228 0.772 39 H 0.128 0.872 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.168 0.832 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.656 -11.226 10.833 16.280 hybrid contribution -0.489 2.621 -0.519 2.716 sum 4.167 -8.605 10.314 14.064 Atomic orbital electron populations 1.70050 1.07286 1.27682 1.51179 1.25640 0.95406 1.02161 0.94703 0.85732 0.78892 0.79927 0.78240 1.20454 1.20513 1.19437 1.21827 0.92886 0.92803 1.50914 0.93319 1.19439 0.91086 0.86449 0.95581 1.62721 1.16865 1.44483 1.01816 1.22634 0.96429 0.97911 0.93581 1.22769 0.92663 0.96456 0.88786 1.87913 1.34293 1.94890 1.15058 1.22881 0.94595 0.96615 0.86558 1.21992 0.93691 0.97800 0.91047 0.95037 1.22087 0.98031 1.02856 0.92862 1.20880 0.94015 0.86026 0.89616 0.86419 1.86502 1.38542 1.16261 1.96191 1.20641 0.98842 0.95308 0.97487 1.21084 0.97567 0.98633 0.97539 1.21371 0.99158 0.99180 0.95065 1.21500 0.99454 0.92987 1.00536 1.21490 0.96491 0.99707 0.96308 1.21279 1.00011 0.97037 0.95376 0.92678 0.98190 0.96386 0.96199 0.90640 0.91475 0.86810 0.87559 0.91425 0.92699 0.90310 0.77226 0.87214 0.84911 0.83653 0.83226 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.59 13.29 21.45 0.28 -53.31 16 2 C 0.02 1.14 5.46 84.65 0.46 1.60 16 3 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.55 -29.62 7.66 25.60 0.20 -29.42 16 8 H 0.05 2.71 5.79 -2.91 -0.02 2.70 16 9 C 0.20 10.30 4.65 85.56 0.40 10.69 16 10 N -0.53 -22.60 4.75 -874.53 -4.15 -26.75 16 11 C 0.02 0.90 5.38 86.31 0.46 1.37 16 12 C 0.07 2.14 7.00 72.01 0.50 2.65 16 13 O -0.40 -13.60 10.83 -148.98 -1.61 -15.22 16 14 C 0.07 2.19 5.97 72.02 0.43 2.62 16 15 C 0.06 2.42 1.62 44.93 0.07 2.50 16 16 H 0.03 1.44 5.98 -2.39 -0.01 1.42 16 17 C -0.12 -4.16 4.14 30.59 0.13 -4.04 16 18 C 0.15 4.56 3.06 29.84 0.09 4.65 16 19 H 0.12 3.03 6.30 -2.39 -0.02 3.02 16 20 O -0.57 -19.47 12.56 -148.98 -1.87 -21.34 16 21 C -0.12 -3.37 4.97 -19.87 -0.10 -3.47 16 22 C -0.13 -3.72 9.34 22.27 0.21 -3.51 16 23 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 24 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 25 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 26 C -0.12 -2.68 9.67 22.27 0.22 -2.46 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.00 0.00 8.12 -2.38 -0.02 -0.02 16 29 H 0.02 0.99 6.27 -2.39 -0.01 0.97 16 30 H 0.02 0.88 6.90 -2.39 -0.02 0.86 16 31 H 0.08 2.86 8.13 -2.39 -0.02 2.84 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.11 2.90 6.64 -2.39 -0.02 2.88 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 2.29 6.16 -2.39 -0.01 2.28 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.53 16 38 H 0.38 12.75 7.69 -74.06 -0.57 12.18 16 39 H 0.11 3.28 6.90 -2.91 -0.02 3.26 16 40 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 41 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 42 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.14 2.50 8.04 -2.91 -0.02 2.47 16 Total: -1.00 -64.97 339.30 -1.14 -66.11 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.44 Total: 28.94 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 3.74 Total: -24.24 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -3.87 Total: -80.06 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -3.48 Total: -36.56 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -64.97 -1.14 -66.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268686928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.501 kcal (2) G-P(sol) polarization free energy of solvation -64.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds