Wall clock time and date at job start Tue Mar 31 2020 07:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48497 * 109.47136 * 270.00581 * 3 2 1 5 5 H 1.48508 * 109.46834 * 30.00014 * 3 2 1 6 6 H 1.48491 * 109.47253 * 149.99727 * 3 2 1 7 7 C 1.37878 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00324 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47231 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 H 1.09004 * 109.46966 * 54.72539 * 15 13 12 17 17 O 1.42897 * 109.47061 * 174.72883 * 15 13 12 18 18 C 1.53005 * 109.46652 * 294.72834 * 15 13 12 19 19 C 1.53005 * 109.46681 * 174.99819 * 18 15 13 20 20 C 1.50695 * 109.46805 * 180.02562 * 19 18 15 21 21 C 1.38242 * 119.99789 * 269.72137 * 20 19 18 22 22 C 1.38237 * 120.00039 * 179.76815 * 21 20 19 23 23 C 1.38240 * 119.99543 * 0.51137 * 22 21 20 24 24 C 1.38237 * 120.00255 * 359.74366 * 23 22 21 25 25 C 1.38231 * 120.00371 * 89.99961 * 20 19 18 26 26 H 0.96995 * 120.00404 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 28 28 H 1.09010 * 109.47143 * 300.00570 * 9 7 2 29 29 H 1.09004 * 109.46699 * 59.99971 * 10 9 7 30 30 H 1.08993 * 109.47124 * 300.00122 * 10 9 7 31 31 H 1.09004 * 109.47116 * 60.00455 * 11 10 9 32 32 H 1.08998 * 109.47794 * 300.00366 * 11 10 9 33 33 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 34 34 H 0.96695 * 114.00285 * 60.00556 * 17 15 13 35 35 H 1.08997 * 109.46810 * 294.99280 * 18 15 13 36 36 H 1.08993 * 109.47410 * 55.00170 * 18 15 13 37 37 H 1.08999 * 109.47014 * 300.00090 * 19 18 15 38 38 H 1.09006 * 109.47192 * 60.00141 * 19 18 15 39 39 H 1.08002 * 120.00009 * 0.02562 * 21 20 19 40 40 H 1.07997 * 120.00349 * 180.23541 * 22 21 20 41 41 H 1.08004 * 119.99520 * 179.72609 * 23 22 21 42 42 H 1.07997 * 119.99489 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99708 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5515 -2.6364 -0.0035 12 7 6.0399 -4.0177 -0.0040 13 6 7.3650 -4.2639 -0.0056 14 8 8.1531 -3.3420 -0.0116 15 6 7.8674 -5.6847 -0.0067 16 1 7.4281 -6.2248 -0.8454 17 8 9.2909 -5.6865 -0.1321 18 6 7.4700 -6.3671 1.3038 19 6 7.8699 -7.8431 1.2518 20 6 7.4779 -8.5153 2.5423 21 6 8.3685 -8.5557 3.5989 22 6 8.0072 -9.1682 4.7843 23 6 6.7592 -9.7495 4.9096 24 6 5.8707 -9.7137 3.8512 25 6 6.2300 -9.0966 2.6676 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8746 -0.6799 -0.8912 29 1 3.6579 -3.1497 -0.8925 30 1 3.6587 -3.1509 0.8874 31 1 5.9156 -2.1231 0.8865 32 1 5.9142 -2.1221 -0.8934 33 1 5.4096 -4.7549 -0.0039 34 1 9.7492 -5.2224 0.5817 35 1 7.9803 -5.8815 2.1355 36 1 6.3919 -6.2875 1.4425 37 1 7.3597 -8.3286 0.4200 38 1 8.9482 -7.9227 1.1131 39 1 9.3450 -8.1051 3.4996 40 1 8.7015 -9.1964 5.6111 41 1 6.4786 -10.2319 5.8342 42 1 4.8959 -10.1683 3.9490 43 1 5.5361 -9.0694 1.8405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270962949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:24 Heat of formation + Delta-G solvation = -93.083929 kcal Electronic energy + Delta-G solvation = -21960.352246 eV Core-core repulsion = 18583.159863 eV Total energy + Delta-G solvation = -3377.192383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.19130 -39.47792 -37.10130 -35.55915 -34.24960 -33.34930 -31.67264 -31.17552 -30.50829 -27.83694 -26.28420 -23.46896 -22.86781 -22.54824 -21.18780 -20.85037 -20.09188 -17.90911 -17.07616 -16.83637 -16.62515 -16.13330 -15.59202 -15.44801 -15.12290 -14.88318 -14.26751 -14.03561 -13.86162 -13.69978 -13.43760 -13.19506 -13.10324 -12.73228 -12.38611 -12.07231 -11.96243 -11.88826 -11.55670 -11.40102 -11.13573 -11.09173 -10.93624 -10.87170 -10.19366 -9.99201 -9.79611 -9.48062 -9.25933 -9.21203 -8.98204 -8.93055 -8.58289 -6.09036 -4.07984 1.05082 1.11034 2.53444 3.16531 3.29238 3.36936 3.40892 3.48972 4.01861 4.30292 4.41927 4.46987 4.60314 4.70853 4.71681 4.78767 4.88130 5.01627 5.10433 5.22931 5.25019 5.29994 5.36487 5.50467 5.59305 5.62321 5.70409 5.78014 5.84374 5.95758 6.17558 6.23285 6.26675 6.33545 6.39192 6.62119 6.71709 6.74085 7.18655 7.22808 7.32203 7.53675 7.73222 8.18035 8.47246 8.94573 9.53168 11.04197 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.002731 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.040881 B =10250.621896 C =11503.081561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.112 3.888 12 N -0.721 5.721 13 C 0.479 3.521 14 O -0.539 6.539 15 C 0.093 3.907 16 H 0.124 0.876 17 O -0.538 6.538 18 C -0.141 4.141 19 C -0.076 4.076 20 C -0.082 4.082 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.118 4.118 25 C -0.117 4.117 26 H 0.264 0.736 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.383 0.617 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.682 -20.825 6.408 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.010 4.010 12 N -0.373 5.373 13 C 0.264 3.736 14 O -0.416 6.416 15 C 0.030 3.970 16 H 0.142 0.858 17 O -0.343 6.343 18 C -0.179 4.179 19 C -0.113 4.113 20 C -0.082 4.082 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.136 4.136 25 C -0.135 4.135 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.234 0.766 34 H 0.231 0.769 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.971 -20.361 5.867 27.148 hybrid contribution -0.055 0.934 0.571 1.096 sum 16.916 -19.427 6.437 26.552 Atomic orbital electron populations 1.69905 1.06320 1.26999 1.50928 1.25027 0.94746 0.99242 0.94435 0.86777 0.80392 0.83529 0.78612 1.20222 1.21341 1.18919 1.21087 0.89275 0.94517 1.51191 0.91000 1.19504 0.97309 0.91438 0.96662 1.21705 0.90526 1.01119 1.01760 1.21685 0.96250 0.81131 1.01983 1.46218 1.06686 1.10145 1.74269 1.21559 0.83011 0.92356 0.76707 1.90717 1.55373 1.46059 1.49454 1.21899 0.83320 0.92046 0.99686 0.85818 1.86562 1.15850 1.78474 1.53417 1.22252 1.03027 0.95664 0.97002 1.20554 1.02665 0.93714 0.94401 1.19914 0.94260 0.98190 0.95864 1.21083 0.99544 0.99798 0.93148 1.21163 0.96702 0.98263 0.97628 1.21172 0.94246 1.00132 0.98885 1.21185 0.99578 0.99383 0.93451 1.21107 0.96060 0.98286 0.98036 0.92661 0.96324 0.96750 0.92069 0.92066 0.91763 0.91705 0.76574 0.76851 0.90692 0.90019 0.90573 0.90002 0.86105 0.86168 0.86221 0.86025 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.05 5.27 -26.74 -0.14 -2.19 16 11 C 0.11 1.80 5.67 -4.04 -0.02 1.78 16 12 N -0.72 -9.18 5.46 -60.29 -0.33 -9.51 16 13 C 0.48 6.34 7.16 -10.98 -0.08 6.26 16 14 O -0.54 -9.44 16.32 -14.31 -0.23 -9.67 16 15 C 0.09 0.87 3.38 -27.88 -0.09 0.77 16 16 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 17 O -0.54 -5.57 12.53 -55.09 -0.69 -6.26 16 18 C -0.14 -1.07 4.85 -26.73 -0.13 -1.20 16 19 C -0.08 -0.52 5.24 -27.88 -0.15 -0.67 16 20 C -0.08 -0.66 5.13 -104.63 -0.54 -1.20 16 21 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 22 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 23 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 25 C -0.12 -0.94 9.70 -39.59 -0.38 -1.32 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 28 H 0.01 0.33 7.57 -51.92 -0.39 -0.06 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.40 3.95 8.20 -40.82 -0.33 3.61 16 34 H 0.38 3.23 8.79 45.56 0.40 3.63 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 37 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 38 H 0.08 0.57 7.77 -51.93 -0.40 0.16 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -34.13 362.76 -9.50 -43.63 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.17 Total: 2.77 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -3.65 Total: -16.57 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.44 Total: -36.34 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.92 Total: -15.94 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.13 -9.50 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270962949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.449 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds