Wall clock time and date at job start Tue Mar 31 2020 07:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48497 * 109.47136 * 270.00581 * 3 2 1 5 5 H 1.48508 * 109.46834 * 30.00014 * 3 2 1 6 6 H 1.48491 * 109.47253 * 149.99727 * 3 2 1 7 7 C 1.37878 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00324 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47231 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 H 1.09004 * 109.46966 * 54.72539 * 15 13 12 17 17 O 1.42897 * 109.47061 * 174.72883 * 15 13 12 18 18 C 1.53005 * 109.46652 * 294.72834 * 15 13 12 19 19 C 1.53005 * 109.46681 * 174.99819 * 18 15 13 20 20 C 1.50695 * 109.46805 * 180.02562 * 19 18 15 21 21 C 1.38242 * 119.99789 * 269.72137 * 20 19 18 22 22 C 1.38237 * 120.00039 * 179.76815 * 21 20 19 23 23 C 1.38240 * 119.99543 * 0.51137 * 22 21 20 24 24 C 1.38237 * 120.00255 * 359.74366 * 23 22 21 25 25 C 1.38231 * 120.00371 * 89.99961 * 20 19 18 26 26 H 0.96995 * 120.00404 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 28 28 H 1.09010 * 109.47143 * 300.00570 * 9 7 2 29 29 H 1.09004 * 109.46699 * 59.99971 * 10 9 7 30 30 H 1.08993 * 109.47124 * 300.00122 * 10 9 7 31 31 H 1.09004 * 109.47116 * 60.00455 * 11 10 9 32 32 H 1.08998 * 109.47794 * 300.00366 * 11 10 9 33 33 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 34 34 H 0.96695 * 114.00285 * 60.00556 * 17 15 13 35 35 H 1.08997 * 109.46810 * 294.99280 * 18 15 13 36 36 H 1.08993 * 109.47410 * 55.00170 * 18 15 13 37 37 H 1.08999 * 109.47014 * 300.00090 * 19 18 15 38 38 H 1.09006 * 109.47192 * 60.00141 * 19 18 15 39 39 H 1.08002 * 120.00009 * 0.02562 * 21 20 19 40 40 H 1.07997 * 120.00349 * 180.23541 * 22 21 20 41 41 H 1.08004 * 119.99520 * 179.72609 * 23 22 21 42 42 H 1.07997 * 119.99489 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99708 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5515 -2.6364 -0.0035 12 7 6.0399 -4.0177 -0.0040 13 6 7.3650 -4.2639 -0.0056 14 8 8.1531 -3.3420 -0.0116 15 6 7.8674 -5.6847 -0.0067 16 1 7.4281 -6.2248 -0.8454 17 8 9.2909 -5.6865 -0.1321 18 6 7.4700 -6.3671 1.3038 19 6 7.8699 -7.8431 1.2518 20 6 7.4779 -8.5153 2.5423 21 6 8.3685 -8.5557 3.5989 22 6 8.0072 -9.1682 4.7843 23 6 6.7592 -9.7495 4.9096 24 6 5.8707 -9.7137 3.8512 25 6 6.2300 -9.0966 2.6676 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8746 -0.6799 -0.8912 29 1 3.6579 -3.1497 -0.8925 30 1 3.6587 -3.1509 0.8874 31 1 5.9156 -2.1231 0.8865 32 1 5.9142 -2.1221 -0.8934 33 1 5.4096 -4.7549 -0.0039 34 1 9.7492 -5.2224 0.5817 35 1 7.9803 -5.8815 2.1355 36 1 6.3919 -6.2875 1.4425 37 1 7.3597 -8.3286 0.4200 38 1 8.9482 -7.9227 1.1131 39 1 9.3450 -8.1051 3.4996 40 1 8.7015 -9.1964 5.6111 41 1 6.4786 -10.2319 5.8342 42 1 4.8959 -10.1683 3.9490 43 1 5.5361 -9.0694 1.8405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270962949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:24 Heat of formation + Delta-G solvation = -115.366098 kcal Electronic energy + Delta-G solvation = -21961.318473 eV Core-core repulsion = 18583.159863 eV Total energy + Delta-G solvation = -3378.158610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.16119 -40.08960 -37.98671 -36.90556 -35.28708 -34.74754 -33.36674 -31.71826 -31.33539 -29.20716 -27.36298 -24.70971 -23.63905 -23.41573 -22.26457 -21.74960 -21.37086 -19.12049 -18.66135 -17.69650 -17.53967 -16.96765 -16.56247 -16.45932 -16.16806 -15.85270 -15.68636 -15.21489 -14.91412 -14.78756 -14.25671 -14.09098 -13.87118 -13.81699 -13.72494 -13.63010 -12.99136 -12.76880 -12.73474 -12.66923 -12.10266 -11.98596 -11.94877 -11.79959 -11.63672 -11.60708 -11.57529 -11.33999 -10.77063 -10.57637 -10.13733 -9.77668 -9.53761 -8.30185 -6.33999 0.48376 0.54515 1.36074 1.37727 1.49232 1.50782 2.13378 2.35443 2.91148 3.05687 3.29471 3.63870 3.77095 3.93396 4.09201 4.11112 4.16970 4.19252 4.24135 4.35892 4.43299 4.48643 4.52125 4.69706 4.73375 4.80761 4.87179 4.89688 5.02805 5.05647 5.15720 5.24141 5.31520 5.35876 5.48336 5.54689 5.62493 5.64326 5.67918 5.77570 6.18064 6.26620 6.41370 6.65527 6.74342 7.16905 7.30997 8.86226 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.002731 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.040881 B =10250.621896 C =11503.081561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.530 4.530 8 H 0.039 0.961 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.124 3.876 12 N -0.711 5.711 13 C 0.477 3.523 14 O -0.584 6.584 15 C 0.106 3.894 16 H 0.147 0.853 17 O -0.549 6.549 18 C -0.132 4.132 19 C -0.069 4.069 20 C -0.092 4.092 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.131 4.131 25 C -0.129 4.129 26 H 0.266 0.734 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.416 0.584 34 H 0.390 0.610 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.095 -21.447 6.440 28.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.000 4.000 12 N -0.364 5.364 13 C 0.264 3.736 14 O -0.465 6.465 15 C 0.043 3.957 16 H 0.164 0.836 17 O -0.355 6.355 18 C -0.170 4.170 19 C -0.106 4.106 20 C -0.092 4.092 21 C -0.149 4.149 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.147 4.147 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.253 0.747 34 H 0.239 0.761 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 18.384 -21.027 5.903 28.548 hybrid contribution -0.540 1.037 0.584 1.307 sum 17.845 -19.990 6.487 27.570 Atomic orbital electron populations 1.70050 1.08202 1.28137 1.52705 1.25973 0.95574 1.03396 0.94255 0.85714 0.79515 0.78613 0.79163 1.19287 1.21047 1.17180 1.21465 0.91880 0.93274 1.50192 0.94297 1.19475 0.94103 0.94797 0.96727 1.21476 0.91949 0.98066 1.02294 1.21308 0.94460 0.82938 1.01249 1.46045 1.07193 1.09332 1.73850 1.22320 0.82418 0.93621 0.75211 1.90698 1.56420 1.47837 1.51510 1.21963 0.82851 0.89395 1.01448 0.83593 1.86545 1.16362 1.78443 1.54121 1.22167 1.03276 0.95882 0.95659 1.20499 1.02797 0.92971 0.94338 1.20078 0.94379 0.98421 0.96298 1.21330 1.00160 1.00037 0.93391 1.21438 0.97142 0.98167 0.98154 1.21454 0.94348 1.00221 0.99582 1.21461 1.00313 0.99549 0.93611 1.21359 0.96430 0.98342 0.98577 0.92500 0.96179 0.96328 0.91571 0.91567 0.92534 0.92583 0.74673 0.76056 0.91332 0.89396 0.89345 0.89990 0.85165 0.84757 0.84798 0.84792 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 2 C 0.00 0.29 5.47 84.66 0.46 0.75 16 3 Si 0.95 44.17 27.47 68.60 1.88 46.06 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 7 C -0.53 -29.78 9.66 25.60 0.25 -29.53 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.48 5.27 30.59 0.16 -3.32 16 11 C 0.12 3.80 5.67 86.38 0.49 4.29 16 12 N -0.71 -16.63 5.46 -463.05 -2.53 -19.16 16 13 C 0.48 11.80 7.16 87.66 0.63 12.42 16 14 O -0.58 -19.92 16.32 15.95 0.26 -19.66 16 15 C 0.11 1.72 3.38 29.85 0.10 1.82 16 16 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 17 O -0.55 -10.32 12.53 -129.99 -1.63 -11.95 16 18 C -0.13 -1.69 4.85 30.60 0.15 -1.54 16 19 C -0.07 -0.79 5.24 29.85 0.16 -0.63 16 20 C -0.09 -1.32 5.13 -19.87 -0.10 -1.43 16 21 C -0.13 -1.93 9.70 22.27 0.22 -1.71 16 22 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 23 C -0.14 -1.97 10.05 22.27 0.22 -1.75 16 24 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 25 C -0.13 -1.87 9.70 22.27 0.22 -1.65 16 26 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 27 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 28 H 0.02 0.82 7.57 -2.38 -0.02 0.80 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.42 7.09 8.20 -92.71 -0.76 6.33 16 34 H 0.39 6.08 8.79 -74.06 -0.65 5.42 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.04 7.79 -2.39 -0.02 1.02 16 37 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 38 H 0.08 0.96 7.77 -2.38 -0.02 0.94 16 39 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.13 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -73.62 362.76 1.34 -72.28 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -0.47 Total: 17.31 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 3.52 Total: -26.10 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -2.23 Total: -77.93 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.37 Total: -31.61 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Total: -73.62 1.34 -72.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270962949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.089 kcal (2) G-P(sol) polarization free energy of solvation -73.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds