Wall clock time and date at job start Tue Mar 31 2020 07:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99540 * 2 1 4 4 H 1.48500 * 109.46949 * 239.99428 * 3 2 1 5 5 H 1.48496 * 109.47648 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47026 * 119.99710 * 3 2 1 7 7 C 1.37869 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00426 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46929 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47237 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99969 * 179.72043 * 12 11 10 14 14 O 1.21281 * 120.00220 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00080 * 180.02562 * 13 12 11 16 16 H 1.09007 * 109.46739 * 305.00404 * 15 13 12 17 17 O 1.42899 * 109.47346 * 185.00269 * 15 13 12 18 18 C 1.52996 * 109.46892 * 64.99942 * 15 13 12 19 19 C 1.52996 * 109.47178 * 185.00292 * 18 15 13 20 20 C 1.50699 * 109.47490 * 180.02562 * 19 18 15 21 21 C 1.38241 * 119.99575 * 269.72725 * 20 19 18 22 22 C 1.38238 * 119.99531 * 179.76461 * 21 20 19 23 23 C 1.38234 * 120.00008 * 0.50238 * 22 21 20 24 24 C 1.38231 * 120.00380 * 359.75227 * 23 22 21 25 25 C 1.38228 * 120.00431 * 89.99391 * 20 19 18 26 26 H 0.96994 * 120.00439 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46736 * 59.99748 * 9 7 2 28 28 H 1.08994 * 109.47114 * 299.99983 * 9 7 2 29 29 H 1.09000 * 109.47441 * 60.00304 * 10 9 7 30 30 H 1.09002 * 109.47087 * 299.99750 * 10 9 7 31 31 H 1.09001 * 109.47671 * 60.00109 * 11 10 9 32 32 H 1.08998 * 109.47454 * 300.00107 * 11 10 9 33 33 H 0.97005 * 119.99811 * 0.02562 * 12 11 10 34 34 H 0.96700 * 113.99694 * 300.00433 * 17 15 13 35 35 H 1.09000 * 109.47461 * 305.00445 * 18 15 13 36 36 H 1.09007 * 109.46760 * 65.00307 * 18 15 13 37 37 H 1.09009 * 109.46845 * 300.00338 * 19 18 15 38 38 H 1.09001 * 109.47337 * 59.99878 * 19 18 15 39 39 H 1.08002 * 120.00131 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.99368 * 180.23065 * 22 21 20 41 41 H 1.08002 * 119.99671 * 179.72359 * 23 22 21 42 42 H 1.07994 * 120.00098 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.00053 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4325 -6.1006 -0.0007 13 6 1.9832 -7.3712 0.0043 14 8 0.7909 -7.5929 0.0089 15 6 2.9626 -8.5167 0.0043 16 1 3.6439 -8.4121 -0.8401 17 8 2.2516 -9.7513 -0.1074 18 6 3.7617 -8.5045 1.3089 19 6 4.8396 -9.5890 1.2569 20 6 5.6263 -9.5774 2.5422 21 6 6.7577 -8.7908 2.6529 22 6 7.4766 -8.7765 3.8336 23 6 7.0701 -9.5566 4.8999 24 6 5.9418 -10.3472 4.7874 25 6 5.2198 -10.3575 3.6085 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8895 31 1 0.8540 -5.0446 -0.8903 32 1 0.8534 -5.0451 0.8896 33 1 3.3862 -5.9233 -0.0003 34 1 1.6256 -9.9111 0.6121 35 1 4.2327 -7.5300 1.4375 36 1 3.0919 -8.6977 2.1470 37 1 4.3685 -10.5636 1.1284 38 1 5.5093 -9.3959 0.4189 39 1 7.0780 -8.1850 1.8182 40 1 8.3584 -8.1591 3.9213 41 1 7.6344 -9.5488 5.8207 42 1 5.6244 -10.9570 5.6203 43 1 4.3386 -10.9757 3.5204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270962960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:29 Heat of formation + Delta-G solvation = -96.580953 kcal Electronic energy + Delta-G solvation = -21917.153091 eV Core-core repulsion = 18539.809066 eV Total energy + Delta-G solvation = -3377.344025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13541 -39.45612 -37.04210 -35.44555 -34.21728 -33.33950 -31.51206 -31.16845 -30.38492 -27.56441 -26.06097 -23.50802 -22.86129 -22.65943 -21.17388 -20.80673 -20.14993 -17.81082 -17.05489 -16.72151 -16.33349 -16.08351 -15.53425 -15.38806 -15.02733 -14.79504 -14.45671 -14.03324 -13.84384 -13.68358 -13.40537 -13.15483 -13.08224 -12.35644 -12.29599 -11.93660 -11.86875 -11.71706 -11.53976 -11.38545 -11.08876 -10.91297 -10.84068 -10.75856 -10.64545 -9.90535 -9.78627 -9.35502 -9.20506 -9.15127 -8.94025 -8.85804 -8.39418 -6.04023 -4.07532 1.05933 1.11687 2.60452 3.23892 3.30262 3.35270 3.37176 3.50070 4.05993 4.32927 4.42132 4.48844 4.64399 4.71838 4.74997 4.80217 4.89660 5.04363 5.13204 5.23780 5.31618 5.31853 5.38590 5.62686 5.67423 5.71867 5.72592 5.79219 5.86315 6.11017 6.18228 6.23794 6.34594 6.40117 6.54899 6.72426 6.76570 6.95841 7.27528 7.60138 7.61920 7.72619 7.94213 8.25535 8.35411 8.98897 9.56804 11.07252 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014490 B = 0.002711 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.926041 B =10325.499090 C =11840.120383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.114 3.886 12 N -0.721 5.721 13 C 0.478 3.522 14 O -0.538 6.538 15 C 0.093 3.907 16 H 0.124 0.876 17 O -0.539 6.539 18 C -0.141 4.141 19 C -0.076 4.076 20 C -0.082 4.082 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.399 0.601 34 H 0.383 0.617 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.157 -21.934 6.363 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.008 4.008 12 N -0.373 5.373 13 C 0.263 3.737 14 O -0.415 6.415 15 C 0.030 3.970 16 H 0.141 0.859 17 O -0.343 6.343 18 C -0.179 4.179 19 C -0.113 4.113 20 C -0.082 4.082 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.145 4.145 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.232 0.768 34 H 0.232 0.768 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.467 -22.031 5.820 26.469 hybrid contribution 0.591 1.282 0.594 1.532 sum 14.058 -20.749 6.413 25.870 Atomic orbital electron populations 1.69953 1.06072 1.26854 1.50402 1.25029 0.94862 0.99317 0.95231 0.86636 0.79563 0.83065 0.78598 1.20232 1.21249 1.20223 1.21161 0.92948 0.90944 1.51162 0.92691 1.19024 0.93839 0.90846 0.97655 1.21889 0.99773 0.93310 1.00880 1.21679 0.91922 0.85159 1.02047 1.46265 1.10874 1.05994 1.74196 1.21537 0.90435 0.84933 0.76834 1.90720 1.16710 1.84675 1.49424 1.21896 0.91896 0.83504 0.99678 0.85888 1.86559 1.58555 1.36003 1.53225 1.22249 0.98016 1.00526 0.97141 1.20556 0.96311 1.00046 0.94431 1.19920 0.95673 0.96746 0.95845 1.21108 0.95276 0.99068 0.98064 1.21179 0.99921 0.99103 0.93428 1.21164 0.97226 0.97236 0.98832 1.21161 0.95607 0.99255 0.97713 1.21084 0.99898 0.99443 0.93120 0.92832 0.96279 0.96290 0.92713 0.92685 0.91695 0.91740 0.76756 0.76842 0.90064 0.90676 0.89997 0.90593 0.85937 0.86063 0.86237 0.86160 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 11 C 0.11 1.97 5.67 -4.04 -0.02 1.95 16 12 N -0.72 -9.71 5.46 -60.29 -0.33 -10.04 16 13 C 0.48 6.64 7.17 -10.98 -0.08 6.57 16 14 O -0.54 -9.85 16.32 -14.30 -0.23 -10.09 16 15 C 0.09 0.91 3.38 -27.88 -0.09 0.81 16 16 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 17 O -0.54 -5.81 12.53 -55.09 -0.69 -6.50 16 18 C -0.14 -1.12 4.85 -26.73 -0.13 -1.25 16 19 C -0.08 -0.54 5.24 -27.89 -0.15 -0.69 16 20 C -0.08 -0.67 5.13 -104.63 -0.54 -1.21 16 21 C -0.12 -0.95 9.70 -39.58 -0.38 -1.33 16 22 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 23 C -0.13 -0.98 10.05 -39.59 -0.40 -1.38 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 25 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.40 4.16 8.17 -40.82 -0.33 3.83 16 34 H 0.38 3.40 8.79 45.56 0.40 3.80 16 35 H 0.08 0.62 7.76 -51.93 -0.40 0.21 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.59 7.77 -51.92 -0.40 0.18 16 38 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -33.73 366.29 -9.87 -43.60 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.20 Total: 2.99 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -3.66 Total: -15.81 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.41 Total: -36.06 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.92 Total: -16.58 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.73 -9.87 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270962960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.977 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds