Wall clock time and date at job start Tue Mar 31 2020 07:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99540 * 2 1 4 4 H 1.48500 * 109.46949 * 239.99428 * 3 2 1 5 5 H 1.48496 * 109.47648 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47026 * 119.99710 * 3 2 1 7 7 C 1.37869 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00426 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46929 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47237 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99969 * 179.72043 * 12 11 10 14 14 O 1.21281 * 120.00220 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00080 * 180.02562 * 13 12 11 16 16 H 1.09007 * 109.46739 * 305.00404 * 15 13 12 17 17 O 1.42899 * 109.47346 * 185.00269 * 15 13 12 18 18 C 1.52996 * 109.46892 * 64.99942 * 15 13 12 19 19 C 1.52996 * 109.47178 * 185.00292 * 18 15 13 20 20 C 1.50699 * 109.47490 * 180.02562 * 19 18 15 21 21 C 1.38241 * 119.99575 * 269.72725 * 20 19 18 22 22 C 1.38238 * 119.99531 * 179.76461 * 21 20 19 23 23 C 1.38234 * 120.00008 * 0.50238 * 22 21 20 24 24 C 1.38231 * 120.00380 * 359.75227 * 23 22 21 25 25 C 1.38228 * 120.00431 * 89.99391 * 20 19 18 26 26 H 0.96994 * 120.00439 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46736 * 59.99748 * 9 7 2 28 28 H 1.08994 * 109.47114 * 299.99983 * 9 7 2 29 29 H 1.09000 * 109.47441 * 60.00304 * 10 9 7 30 30 H 1.09002 * 109.47087 * 299.99750 * 10 9 7 31 31 H 1.09001 * 109.47671 * 60.00109 * 11 10 9 32 32 H 1.08998 * 109.47454 * 300.00107 * 11 10 9 33 33 H 0.97005 * 119.99811 * 0.02562 * 12 11 10 34 34 H 0.96700 * 113.99694 * 300.00433 * 17 15 13 35 35 H 1.09000 * 109.47461 * 305.00445 * 18 15 13 36 36 H 1.09007 * 109.46760 * 65.00307 * 18 15 13 37 37 H 1.09009 * 109.46845 * 300.00338 * 19 18 15 38 38 H 1.09001 * 109.47337 * 59.99878 * 19 18 15 39 39 H 1.08002 * 120.00131 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.99368 * 180.23065 * 22 21 20 41 41 H 1.08002 * 119.99671 * 179.72359 * 23 22 21 42 42 H 1.07994 * 120.00098 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.00053 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4325 -6.1006 -0.0007 13 6 1.9832 -7.3712 0.0043 14 8 0.7909 -7.5929 0.0089 15 6 2.9626 -8.5167 0.0043 16 1 3.6439 -8.4121 -0.8401 17 8 2.2516 -9.7513 -0.1074 18 6 3.7617 -8.5045 1.3089 19 6 4.8396 -9.5890 1.2569 20 6 5.6263 -9.5774 2.5422 21 6 6.7577 -8.7908 2.6529 22 6 7.4766 -8.7765 3.8336 23 6 7.0701 -9.5566 4.8999 24 6 5.9418 -10.3472 4.7874 25 6 5.2198 -10.3575 3.6085 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8895 31 1 0.8540 -5.0446 -0.8903 32 1 0.8534 -5.0451 0.8896 33 1 3.3862 -5.9233 -0.0003 34 1 1.6256 -9.9111 0.6121 35 1 4.2327 -7.5300 1.4375 36 1 3.0919 -8.6977 2.1470 37 1 4.3685 -10.5636 1.1284 38 1 5.5093 -9.3959 0.4189 39 1 7.0780 -8.1850 1.8182 40 1 8.3584 -8.1591 3.9213 41 1 7.6344 -9.5488 5.8207 42 1 5.6244 -10.9570 5.6203 43 1 4.3386 -10.9757 3.5204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270962960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:29 Heat of formation + Delta-G solvation = -118.049162 kcal Electronic energy + Delta-G solvation = -21918.084022 eV Core-core repulsion = 18539.809066 eV Total energy + Delta-G solvation = -3378.274956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16635 -40.08530 -37.98098 -36.88711 -35.32293 -34.75065 -33.14420 -31.71264 -31.26513 -28.92608 -27.30625 -24.95170 -23.70400 -23.41016 -22.34165 -21.74585 -21.41724 -18.90583 -18.47103 -17.67437 -17.52267 -16.96569 -16.57496 -16.46713 -16.27802 -15.86040 -15.71732 -15.19446 -14.95309 -14.28104 -14.24652 -14.07564 -13.87988 -13.75686 -13.70846 -13.53476 -12.98329 -12.73407 -12.71074 -12.55385 -12.42341 -12.09797 -11.98268 -11.69370 -11.67453 -11.62635 -11.50043 -11.24990 -10.56604 -10.55446 -10.15001 -9.77062 -9.53349 -8.19981 -6.31817 0.48905 0.55074 1.41599 1.44576 1.50518 1.52437 2.12431 2.42252 2.91640 3.13791 3.28965 3.63800 3.77132 3.93610 4.11348 4.15548 4.17386 4.19972 4.24625 4.36416 4.43613 4.52384 4.53344 4.70213 4.73700 4.81125 4.92553 4.97010 5.05912 5.15683 5.16261 5.24695 5.31976 5.39694 5.51332 5.62986 5.68360 5.69479 5.78180 5.83348 6.18606 6.21034 6.41393 6.65279 6.85832 7.17805 7.38058 8.92003 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014490 B = 0.002711 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.926041 B =10325.499090 C =11840.120383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.127 3.873 12 N -0.708 5.708 13 C 0.475 3.525 14 O -0.587 6.587 15 C 0.107 3.893 16 H 0.149 0.851 17 O -0.549 6.549 18 C -0.132 4.132 19 C -0.069 4.069 20 C -0.092 4.092 21 C -0.128 4.128 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.131 4.131 25 C -0.132 4.132 26 H 0.263 0.737 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.417 0.583 34 H 0.389 0.611 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.827 -22.117 6.397 28.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.003 3.997 12 N -0.362 5.362 13 C 0.262 3.738 14 O -0.467 6.467 15 C 0.045 3.955 16 H 0.166 0.834 17 O -0.355 6.355 18 C -0.170 4.170 19 C -0.106 4.106 20 C -0.092 4.092 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.150 4.150 26 H 0.072 0.928 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.255 0.745 34 H 0.239 0.761 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.191 -22.233 5.858 28.121 hybrid contribution -0.266 1.293 0.609 1.454 sum 15.924 -20.941 6.468 27.091 Atomic orbital electron populations 1.70106 1.07993 1.27886 1.51658 1.26034 0.95735 1.03609 0.94763 0.85469 0.78191 0.77879 0.79322 1.18971 1.21252 1.18935 1.21662 0.93792 0.91980 1.50534 0.91407 1.18945 0.94477 0.93088 0.94964 1.21592 0.98392 0.91661 1.02248 1.21240 0.92098 0.85798 1.00537 1.46029 1.11259 1.05074 1.73815 1.22403 0.90526 0.85630 0.75199 1.90703 1.19131 1.85350 1.51541 1.21972 0.90775 0.81148 1.01654 0.83423 1.86541 1.58908 1.36101 1.53936 1.22169 0.97820 1.01365 0.95619 1.20496 0.96016 0.99567 0.94495 1.20076 0.95989 0.96917 0.96208 1.21368 0.95319 0.99277 0.98662 1.21466 1.00519 0.99367 0.93530 1.21451 0.97425 0.97153 0.99571 1.21431 0.95750 0.99550 0.98209 1.21324 1.00401 0.99831 0.93428 0.92810 0.99108 0.99071 0.91204 0.91208 0.93445 0.93334 0.74545 0.76073 0.89268 0.91450 0.90069 0.89203 0.84530 0.84684 0.84784 0.84824 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.43 29.54 68.60 2.03 45.45 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.54 -29.95 9.11 25.60 0.23 -29.72 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.78 5.27 30.59 0.16 -3.62 16 11 C 0.13 4.39 5.67 86.38 0.49 4.88 16 12 N -0.71 -17.99 5.46 -463.05 -2.53 -20.51 16 13 C 0.48 12.69 7.17 87.66 0.63 13.31 16 14 O -0.59 -21.60 16.32 15.96 0.26 -21.34 16 15 C 0.11 1.85 3.38 29.85 0.10 1.95 16 16 H 0.15 1.87 8.14 -2.38 -0.02 1.86 16 17 O -0.55 -10.96 12.53 -129.99 -1.63 -12.59 16 18 C -0.13 -1.77 4.85 30.59 0.15 -1.63 16 19 C -0.07 -0.81 5.24 29.85 0.16 -0.65 16 20 C -0.09 -1.34 5.13 -19.87 -0.10 -1.44 16 21 C -0.13 -1.82 9.70 22.27 0.22 -1.61 16 22 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 23 C -0.14 -1.96 10.05 22.27 0.22 -1.73 16 24 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 25 C -0.13 -1.98 9.70 22.27 0.22 -1.77 16 26 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 27 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.42 7.50 8.17 -92.70 -0.76 6.74 16 34 H 0.39 6.60 8.79 -74.06 -0.65 5.94 16 35 H 0.09 1.09 7.76 -2.39 -0.02 1.07 16 36 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.08 0.99 7.77 -2.38 -0.02 0.97 16 38 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 39 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.13 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.13 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -73.70 366.29 1.54 -72.17 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.41 Total: 17.46 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 3.53 Total: -23.76 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.24 Total: -77.39 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.37 Total: -33.93 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -73.70 1.54 -72.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270962960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.883 kcal (2) G-P(sol) polarization free energy of solvation -73.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds