Wall clock time and date at job start Tue Mar 31 2020 07:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86797 * 120.00268 * 2 1 4 4 H 1.48496 * 109.47539 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47334 * 300.00307 * 3 2 1 6 6 H 1.48505 * 109.47055 * 60.00192 * 3 2 1 7 7 C 1.40053 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00182 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99751 * 359.97438 * 7 2 1 10 10 O 1.21692 * 120.00154 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00123 * 180.02562 * 9 7 2 12 12 C 1.46501 * 119.99969 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46769 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47150 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47523 * 179.97438 * 14 13 12 16 16 O 1.42893 * 109.47460 * 179.97438 * 15 14 13 17 17 C 1.42896 * 114.00368 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47376 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 0.97000 * 119.99986 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99887 * 0.02562 * 11 9 7 27 27 H 1.09001 * 109.46828 * 60.00363 * 12 11 9 28 28 H 1.08993 * 109.47418 * 300.00206 * 12 11 9 29 29 H 1.08993 * 109.47328 * 60.00255 * 13 12 11 30 30 H 1.09004 * 109.47624 * 299.99927 * 13 12 11 31 31 H 1.08998 * 109.47484 * 59.99566 * 14 13 12 32 32 H 1.09001 * 109.46810 * 299.99830 * 14 13 12 33 33 H 1.09006 * 109.46948 * 59.99612 * 15 14 13 34 34 H 1.08998 * 109.47057 * 300.00511 * 15 14 13 35 35 H 1.08995 * 109.47430 * 59.99865 * 17 16 15 36 36 H 1.09004 * 109.46934 * 300.00059 * 17 16 15 37 37 H 1.09005 * 109.47610 * 60.00060 * 18 17 16 38 38 H 1.09000 * 109.47256 * 299.99402 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8820 2.3964 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9164 -0.0011 13 6 2.2106 -6.0793 -0.0003 14 6 1.4456 -7.4044 -0.0016 15 6 2.4398 -8.5673 -0.0015 16 8 1.7253 -9.8048 -0.0020 17 6 2.5652 -10.9609 -0.0014 18 6 1.6980 -12.2213 -0.0027 19 6 2.5838 -13.4406 -0.0026 20 6 2.9891 -14.0004 1.1946 21 6 3.8011 -15.1191 1.1946 22 6 4.2074 -15.6783 -0.0025 23 6 3.8065 -15.1154 -1.1996 24 6 2.9906 -13.9995 -1.1997 25 1 -0.4850 0.8400 0.0004 26 1 2.9189 -3.6477 -0.0002 27 1 0.5901 -4.9739 -0.8914 28 1 0.5893 -4.9744 0.8885 29 1 2.8365 -6.0216 0.8901 30 1 2.8380 -6.0216 -0.8898 31 1 0.8199 -7.4619 -0.8922 32 1 0.8180 -7.4623 0.8877 33 1 3.0659 -8.5100 0.8890 34 1 3.0671 -8.5091 -0.8909 35 1 3.1938 -10.9529 0.8890 36 1 3.1952 -10.9528 -0.8909 37 1 1.0697 -12.2293 -0.8934 38 1 1.0678 -12.2297 0.8866 39 1 2.6713 -13.5637 2.1299 40 1 4.1181 -15.5562 2.1300 41 1 4.8415 -16.5526 -0.0024 42 1 4.1274 -15.5497 -2.1349 43 1 2.6734 -13.5626 -2.1350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274691495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:47 Heat of formation + Delta-G solvation = -88.032222 kcal Electronic energy + Delta-G solvation = -20952.858570 eV Core-core repulsion = 17575.885246 eV Total energy + Delta-G solvation = -3376.973324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 11.23 seconds Orbital eigenvalues (eV) -39.74093 -38.26406 -37.32868 -35.06647 -33.74968 -32.54805 -31.78021 -31.28336 -29.13371 -27.61341 -25.84261 -23.79598 -22.96962 -22.70572 -21.36772 -20.88246 -19.56765 -17.32833 -17.09511 -16.61744 -16.52361 -15.60687 -15.39808 -15.25486 -15.00858 -14.87842 -14.16652 -13.93442 -13.84462 -13.57549 -13.37398 -13.11974 -12.55378 -12.40435 -12.01870 -11.83442 -11.80976 -11.40093 -11.39477 -11.33456 -11.16475 -11.02471 -10.93087 -10.72838 -10.41075 -10.40610 -10.16369 -9.75598 -9.31549 -9.11652 -8.83443 -7.57762 -7.45249 -6.15733 -4.61135 0.92914 1.00370 3.14572 3.22386 3.25459 3.27282 3.54545 4.13142 4.43163 4.49167 4.62377 4.62584 4.74612 4.76324 4.80703 4.95282 4.99520 5.11709 5.13177 5.14600 5.14628 5.31037 5.43489 5.50657 5.50938 5.65162 5.68564 5.74934 5.77592 5.83371 5.99319 6.06953 6.11362 6.12271 6.24326 6.25851 6.60764 6.64997 6.65733 7.04715 7.46106 7.97264 8.14749 8.36590 9.05340 9.58180 10.63515 10.82404 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.057076 B = 0.001618 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.459504 B =17296.344412 C =17455.806713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.553 3.447 10 O -0.582 6.582 11 N -0.770 5.770 12 C 0.134 3.866 13 C -0.125 4.125 14 C -0.115 4.115 15 C 0.065 3.935 16 O -0.390 6.390 17 C 0.069 3.931 18 C -0.081 4.081 19 C -0.081 4.081 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.267 0.733 26 H 0.379 0.621 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.519 -29.115 -0.002 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.464 6.464 11 N -0.425 5.425 12 C 0.008 3.992 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.012 4.012 16 O -0.309 6.309 17 C -0.008 4.008 18 C -0.118 4.118 19 C -0.081 4.081 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.133 4.133 25 H 0.078 0.922 26 H 0.210 0.790 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.221 -29.017 -0.003 30.159 hybrid contribution 1.295 0.720 0.000 1.482 sum 9.516 -28.297 -0.003 29.854 Atomic orbital electron populations 1.70034 1.07063 1.27097 1.35544 1.25715 0.94611 1.00291 0.92639 0.86324 0.80464 0.81798 0.78189 1.18810 1.20182 1.20177 1.20936 0.93601 0.89459 1.54371 0.91404 1.18240 0.87231 0.82527 0.76337 1.90597 1.14122 1.86929 1.54798 1.46135 1.08511 1.05055 1.82816 1.20826 0.93947 0.83637 1.00742 1.21691 0.98779 0.93597 1.02228 1.21436 0.98181 0.91901 1.03754 1.22555 0.94916 0.83596 1.00087 1.87856 1.34029 1.13567 1.95460 1.22391 0.92889 0.85122 1.00364 1.20489 0.96936 0.89927 1.04438 1.19772 0.98328 0.96643 0.93371 1.21126 0.98140 0.96326 0.97703 1.21174 0.98061 0.96299 0.98193 1.21184 1.00280 1.00130 0.92660 1.21174 0.98048 0.96311 0.98192 1.21125 0.98102 0.96365 0.97704 0.92192 0.78951 0.93388 0.93393 0.91664 0.91672 0.90883 0.90879 0.93358 0.93348 0.93313 0.93322 0.89982 0.89979 0.85893 0.86003 0.86129 0.86001 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.45 11.83 55.55 0.66 -22.80 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 16 4 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.55 -15.73 9.54 -35.63 -0.34 -16.07 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.55 16.16 7.75 -12.99 -0.10 16.06 16 10 O -0.58 -19.37 15.02 5.20 0.08 -19.29 16 11 N -0.77 -17.59 5.55 -61.72 -0.34 -17.93 16 12 C 0.13 2.60 5.67 -4.04 -0.02 2.58 16 13 C -0.12 -1.73 5.33 -26.73 -0.14 -1.87 16 14 C -0.11 -1.43 5.58 -26.73 -0.15 -1.58 16 15 C 0.06 0.71 5.94 37.16 0.22 0.93 16 16 O -0.39 -4.56 10.34 -35.23 -0.36 -4.92 16 17 C 0.07 0.63 5.92 37.15 0.22 0.85 16 18 C -0.08 -0.65 5.71 -27.88 -0.16 -0.81 16 19 C -0.08 -0.64 5.13 -104.62 -0.54 -1.18 16 20 C -0.11 -0.85 9.70 -39.58 -0.38 -1.24 16 21 C -0.12 -0.81 10.05 -39.58 -0.40 -1.20 16 22 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 23 C -0.12 -0.81 10.05 -39.58 -0.40 -1.20 16 24 C -0.11 -0.85 9.70 -39.58 -0.38 -1.24 16 25 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 26 H 0.38 7.51 8.45 -40.82 -0.35 7.17 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -35.63 367.72 -9.60 -45.23 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.07 Total: 3.66 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -3.07 Total: -4.81 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.31 Total: -40.73 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.29 Total: -24.22 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.63 -9.60 -45.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274691495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.804 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.23 seconds