Wall clock time and date at job start Tue Mar 31 2020 07:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86797 * 120.00268 * 2 1 4 4 H 1.48496 * 109.47539 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47334 * 300.00307 * 3 2 1 6 6 H 1.48505 * 109.47055 * 60.00192 * 3 2 1 7 7 C 1.40053 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00182 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99751 * 359.97438 * 7 2 1 10 10 O 1.21692 * 120.00154 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00123 * 180.02562 * 9 7 2 12 12 C 1.46501 * 119.99969 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46769 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47150 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47523 * 179.97438 * 14 13 12 16 16 O 1.42893 * 109.47460 * 179.97438 * 15 14 13 17 17 C 1.42896 * 114.00368 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47376 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 0.97000 * 119.99986 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99887 * 0.02562 * 11 9 7 27 27 H 1.09001 * 109.46828 * 60.00363 * 12 11 9 28 28 H 1.08993 * 109.47418 * 300.00206 * 12 11 9 29 29 H 1.08993 * 109.47328 * 60.00255 * 13 12 11 30 30 H 1.09004 * 109.47624 * 299.99927 * 13 12 11 31 31 H 1.08998 * 109.47484 * 59.99566 * 14 13 12 32 32 H 1.09001 * 109.46810 * 299.99830 * 14 13 12 33 33 H 1.09006 * 109.46948 * 59.99612 * 15 14 13 34 34 H 1.08998 * 109.47057 * 300.00511 * 15 14 13 35 35 H 1.08995 * 109.47430 * 59.99865 * 17 16 15 36 36 H 1.09004 * 109.46934 * 300.00059 * 17 16 15 37 37 H 1.09005 * 109.47610 * 60.00060 * 18 17 16 38 38 H 1.09000 * 109.47256 * 299.99402 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8820 2.3964 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9164 -0.0011 13 6 2.2106 -6.0793 -0.0003 14 6 1.4456 -7.4044 -0.0016 15 6 2.4398 -8.5673 -0.0015 16 8 1.7253 -9.8048 -0.0020 17 6 2.5652 -10.9609 -0.0014 18 6 1.6980 -12.2213 -0.0027 19 6 2.5838 -13.4406 -0.0026 20 6 2.9891 -14.0004 1.1946 21 6 3.8011 -15.1191 1.1946 22 6 4.2074 -15.6783 -0.0025 23 6 3.8065 -15.1154 -1.1996 24 6 2.9906 -13.9995 -1.1997 25 1 -0.4850 0.8400 0.0004 26 1 2.9189 -3.6477 -0.0002 27 1 0.5901 -4.9739 -0.8914 28 1 0.5893 -4.9744 0.8885 29 1 2.8365 -6.0216 0.8901 30 1 2.8380 -6.0216 -0.8898 31 1 0.8199 -7.4619 -0.8922 32 1 0.8180 -7.4623 0.8877 33 1 3.0659 -8.5100 0.8890 34 1 3.0671 -8.5091 -0.8909 35 1 3.1938 -10.9529 0.8890 36 1 3.1952 -10.9528 -0.8909 37 1 1.0697 -12.2293 -0.8934 38 1 1.0678 -12.2297 0.8866 39 1 2.6713 -13.5637 2.1299 40 1 4.1181 -15.5562 2.1300 41 1 4.8415 -16.5526 -0.0024 42 1 4.1274 -15.5497 -2.1349 43 1 2.6734 -13.5626 -2.1350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274691495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:43 Heat of formation + Delta-G solvation = -110.976989 kcal Electronic energy + Delta-G solvation = -20953.853530 eV Core-core repulsion = 17575.885246 eV Total energy + Delta-G solvation = -3377.968284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.27293 -39.50813 -38.97408 -36.52258 -34.76911 -34.43557 -33.40368 -31.77490 -30.07203 -29.01852 -27.60626 -24.52860 -23.96504 -23.46678 -22.30354 -21.78556 -21.55253 -19.16891 -17.86324 -17.46079 -17.45015 -17.22424 -16.47785 -16.38554 -15.91826 -15.83698 -15.82736 -15.42246 -14.87031 -14.37164 -14.27818 -13.95967 -13.92765 -13.73639 -13.24930 -13.07418 -13.01145 -12.75254 -12.72659 -12.58948 -12.26421 -12.25419 -11.97601 -11.96551 -11.82574 -11.77934 -11.59124 -10.94845 -10.55943 -9.88091 -9.82531 -9.64484 -9.48433 -8.29346 -6.86184 0.40689 0.49500 1.40962 1.41240 1.59557 2.25031 2.46964 2.53671 2.91302 3.23093 3.61489 3.88811 3.89010 3.97335 3.99034 4.17221 4.18822 4.23526 4.30735 4.36620 4.38997 4.46888 4.49540 4.61541 4.63870 4.65690 4.76501 4.86728 4.93931 4.95448 5.02276 5.18061 5.18238 5.29629 5.32150 5.32467 5.57341 5.63013 5.70670 5.87923 6.11911 6.24863 6.25610 6.27973 6.86462 7.56427 8.49180 8.67497 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.057076 B = 0.001618 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.459504 B =17296.344412 C =17455.806713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.245 1.245 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.532 3.468 10 O -0.636 6.636 11 N -0.756 5.756 12 C 0.133 3.867 13 C -0.106 4.106 14 C -0.111 4.111 15 C 0.068 3.932 16 O -0.410 6.410 17 C 0.069 3.931 18 C -0.076 4.076 19 C -0.093 4.093 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.128 4.128 25 H 0.275 0.725 26 H 0.397 0.603 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.214 -29.546 -0.001 31.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.168 1.168 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.611 4.611 8 H 0.108 0.892 9 C 0.337 3.663 10 O -0.523 6.523 11 N -0.411 5.411 12 C 0.008 3.992 13 C -0.144 4.144 14 C -0.149 4.149 15 C -0.008 4.008 16 O -0.330 6.330 17 C -0.008 4.008 18 C -0.113 4.113 19 C -0.093 4.093 20 C -0.146 4.146 21 C -0.145 4.145 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.146 4.146 25 H 0.084 0.916 26 H 0.231 0.769 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.971 -29.507 -0.002 31.480 hybrid contribution 0.439 0.742 0.000 0.862 sum 11.411 -28.765 -0.002 30.945 Atomic orbital electron populations 1.70203 1.09659 1.28922 1.36542 1.27036 0.95546 1.05142 0.91160 0.84923 0.79357 0.75160 0.78514 1.16812 1.19358 1.19346 1.21499 0.94853 0.90045 1.54679 0.89174 1.18708 0.86889 0.84613 0.76129 1.90549 1.16373 1.88100 1.57309 1.45809 1.09410 1.04785 1.81086 1.20953 0.95033 0.84254 0.98973 1.21520 0.97483 0.91559 1.03833 1.21342 0.98385 0.92056 1.03097 1.22493 0.94265 0.82756 1.01316 1.87822 1.35221 1.14345 1.95626 1.22498 0.92890 0.84504 1.00880 1.20427 0.96846 0.89815 1.04198 1.19812 0.98823 0.96789 0.93879 1.21322 0.98508 0.96821 0.97918 1.21457 0.97761 0.96098 0.99204 1.21505 1.00236 1.00655 0.92496 1.21458 0.97749 0.96109 0.99203 1.21320 0.98471 0.96859 0.97918 0.91560 0.76905 0.95252 0.95258 0.89998 0.90003 0.91634 0.91631 0.92103 0.92091 0.92737 0.92748 0.90227 0.90223 0.85200 0.84299 0.84181 0.84298 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.39 11.83 21.84 0.26 -51.14 16 2 C 0.03 1.47 5.50 85.31 0.47 1.94 16 3 Si 1.00 41.22 29.56 68.60 2.03 43.24 16 4 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.57 -33.06 9.54 24.83 0.24 -32.82 16 8 H 0.09 4.61 7.85 -2.91 -0.02 4.58 16 9 C 0.53 31.82 7.75 86.36 0.67 32.49 16 10 O -0.64 -44.10 15.02 -4.32 -0.06 -44.17 16 11 N -0.76 -34.64 5.55 -467.41 -2.59 -37.23 16 12 C 0.13 5.23 5.67 86.38 0.49 5.72 16 13 C -0.11 -2.78 5.33 30.60 0.16 -2.61 16 14 C -0.11 -2.66 5.58 30.59 0.17 -2.49 16 15 C 0.07 1.36 5.94 71.98 0.43 1.79 16 16 O -0.41 -9.17 10.34 -148.98 -1.54 -10.71 16 17 C 0.07 1.17 5.92 71.98 0.43 1.60 16 18 C -0.08 -1.18 5.71 29.85 0.17 -1.01 16 19 C -0.09 -1.40 5.13 -19.86 -0.10 -1.51 16 20 C -0.13 -1.79 9.70 22.27 0.22 -1.57 16 21 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16 22 C -0.13 -1.50 10.05 22.27 0.22 -1.28 16 23 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16 24 C -0.13 -1.79 9.70 22.27 0.22 -1.57 16 25 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 26 H 0.40 15.23 8.45 -92.71 -0.78 14.45 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.08 1.25 8.09 -2.38 -0.02 1.23 16 38 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 39 H 0.13 1.52 8.06 -2.91 -0.02 1.49 16 40 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 41 H 0.14 0.97 8.06 -2.91 -0.02 0.94 16 42 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 43 H 0.13 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -79.30 367.72 2.51 -76.79 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.20 Total: 27.18 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 4.22 Total: -3.98 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -2.34 Total: -88.37 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -1.61 Total: -54.87 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -79.30 2.51 -76.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274691495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.182 kcal (2) G-P(sol) polarization free energy of solvation -79.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds