Wall clock time and date at job start Tue Mar 31 2020 06:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46865 * 2 1 4 4 C 1.53000 * 109.46859 * 120.00026 * 2 1 3 5 5 H 1.09003 * 110.69815 * 303.14024 * 4 2 1 6 6 C 1.54266 * 110.94873 * 179.70937 * 4 2 1 7 7 C 1.52334 * 112.58560 * 217.12301 * 6 4 2 8 8 H 1.08992 * 108.75119 * 120.74168 * 7 6 4 9 9 N 1.46501 * 108.86630 * 239.18280 * 7 6 4 10 10 C 1.38857 * 119.99929 * 209.53265 * 9 7 6 11 11 C 1.39565 * 119.84236 * 179.97438 * 10 9 7 12 12 C 1.36338 * 120.16176 * 180.02562 * 11 10 9 13 13 C 1.40890 * 119.83365 * 359.97438 * 12 11 10 14 14 C 1.41142 * 120.15436 * 179.72293 * 13 12 11 15 15 H 1.07999 * 120.00169 * 334.76251 * 14 13 12 16 16 C 1.39867 * 119.99788 * 154.75514 * 14 13 12 17 17 N 1.30896 * 120.00256 * 342.82062 * 16 14 13 18 18 Si 1.86801 * 119.99891 * 162.82455 * 16 14 13 19 19 H 1.48500 * 109.47158 * 89.99631 * 18 16 14 20 20 H 1.48501 * 109.47017 * 210.00300 * 18 16 14 21 21 H 1.48503 * 109.46793 * 329.99946 * 18 16 14 22 22 C 1.40889 * 119.69203 * 359.97438 * 13 12 11 23 23 C 1.36342 * 119.83234 * 0.02562 * 22 13 12 24 24 C 1.54252 * 112.58874 * 359.97438 * 7 6 4 25 25 S 1.83949 * 110.78898 * 66.45722 * 4 2 1 26 26 H 1.09005 * 109.46713 * 60.00159 * 1 2 3 27 27 H 1.08998 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47297 * 299.99893 * 1 2 3 29 29 H 1.09000 * 109.47297 * 240.00107 * 2 1 3 30 30 H 1.09000 * 109.47175 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47704 * 299.99830 * 3 2 1 32 32 H 1.08997 * 109.47567 * 59.99848 * 3 2 1 33 33 H 1.09003 * 108.86680 * 96.30559 * 6 4 2 34 34 H 1.08994 * 108.86697 * 337.94161 * 6 4 2 35 35 H 0.97003 * 120.00513 * 29.53019 * 9 7 6 36 36 H 1.07996 * 119.91839 * 0.02562 * 11 10 9 37 37 H 1.07999 * 120.08624 * 179.97438 * 12 11 10 38 38 H 0.96998 * 120.00496 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.08169 * 179.97438 * 22 13 12 40 40 H 1.07996 * 119.91590 * 179.97438 * 23 22 13 41 41 H 1.09006 * 110.78704 * 142.80108 * 24 7 6 42 42 H 1.09002 * 110.79078 * 266.25688 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6428 -0.2564 2.1516 6 6 3.5821 -0.7475 1.2801 7 6 4.1339 -2.0521 1.8405 8 1 4.7630 -2.5203 1.0836 9 7 4.9534 -1.7530 3.0175 10 6 6.0204 -2.5778 3.3484 11 6 6.7993 -2.2895 4.4700 12 6 7.8487 -3.0947 4.8006 13 6 8.1457 -4.2203 4.0070 14 6 9.2340 -5.0551 4.3397 15 1 10.0637 -4.6603 4.9073 16 6 9.2380 -6.3938 3.9344 17 7 8.1239 -6.9656 3.5535 18 14 10.8333 -7.3656 3.9368 19 1 11.0104 -8.0231 5.2564 20 1 10.7850 -8.3988 2.8712 21 1 11.9727 -6.4472 3.6844 22 6 7.3544 -4.5058 2.8768 23 6 6.3080 -3.6918 2.5583 24 6 3.0212 -3.0404 2.2462 25 16 1.6099 -2.5089 1.1923 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.9364 0.0788 1.8965 34 1 3.9573 -0.6130 0.2657 35 1 4.7508 -0.9788 3.5657 36 1 6.5701 -1.4266 5.0776 37 1 8.4508 -2.8702 5.6686 38 1 8.1265 -7.8941 3.2728 39 1 7.5767 -5.3667 2.2639 40 1 5.7009 -3.9091 1.6920 41 1 3.3113 -4.0655 2.0154 42 1 2.7766 -2.9350 3.3032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277388137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:49 Heat of formation + Delta-G solvation = 6.941922 kcal Electronic energy + Delta-G solvation = -20515.623006 eV Core-core repulsion = 17585.520941 eV Total energy + Delta-G solvation = -2930.102065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -38.59108 -37.31546 -35.65057 -33.52011 -31.53986 -29.55858 -28.71305 -27.97130 -27.42069 -25.17605 -23.93089 -21.79601 -20.77546 -20.27311 -19.38076 -17.25256 -16.86994 -16.56512 -15.25031 -15.07701 -14.87087 -14.75930 -14.02187 -13.78266 -13.63725 -13.16487 -12.91662 -12.71518 -12.50996 -12.44239 -12.24572 -12.01205 -11.77965 -11.48640 -11.45988 -11.24611 -11.06404 -11.02665 -10.97536 -10.74613 -10.67234 -10.49049 -9.92812 -9.73187 -9.32059 -9.25534 -8.59532 -7.69046 -7.53861 -6.67114 -6.44859 -4.07411 1.87668 2.34889 2.88961 3.06147 3.13488 3.17901 3.31562 4.03487 4.16032 4.35314 4.47175 4.71923 4.77901 4.93772 4.98401 5.11104 5.24214 5.29986 5.39748 5.43052 5.56138 5.60329 5.67902 5.78634 5.83436 5.84627 5.99223 6.05538 6.07686 6.13545 6.23255 6.31113 6.86697 6.89480 7.16221 7.32093 7.49991 7.64783 7.79027 8.11619 8.23471 8.43299 8.62277 8.74949 9.02940 9.10945 10.34856 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033895 B = 0.003107 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.889707 B = 9010.779782 C = 9430.446849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.146 4.146 4 C -0.026 4.026 5 H 0.092 0.908 6 C -0.128 4.128 7 C 0.160 3.840 8 H 0.087 0.913 9 N -0.753 5.753 10 C 0.086 3.914 11 C -0.155 4.155 12 C -0.188 4.188 13 C 0.077 3.923 14 C -0.467 4.467 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.807 5.807 18 Si 0.902 3.098 19 H -0.272 1.272 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.124 4.124 23 C -0.163 4.163 24 C -0.074 4.074 25 S -0.309 6.309 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.384 0.616 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.277 0.723 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 11.616 -6.304 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.205 4.205 4 C -0.154 4.154 5 H 0.110 0.890 6 C -0.167 4.167 7 C 0.051 3.949 8 H 0.105 0.895 9 N -0.389 5.389 10 C -0.011 4.011 11 C -0.177 4.177 12 C -0.208 4.208 13 C 0.074 3.926 14 C -0.498 4.498 15 H 0.091 0.909 16 C -0.141 4.141 17 N -0.434 5.434 18 Si 0.727 3.273 19 H -0.198 1.198 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.144 4.144 23 C -0.184 4.184 24 C -0.224 4.224 25 S -0.081 6.081 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.217 0.783 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.136 0.864 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.352 10.616 -7.059 17.751 hybrid contribution 1.441 0.181 0.920 1.719 sum -10.911 10.797 -6.139 16.532 Atomic orbital electron populations 1.21865 0.94653 1.02313 1.01724 1.21060 0.96207 0.95902 0.96470 1.21884 1.01476 0.95161 1.01957 1.23944 0.97100 0.92950 1.01439 0.88999 1.22357 0.93077 0.98233 1.03038 1.21187 0.91527 0.92568 0.89581 0.89482 1.44163 1.33172 1.31341 1.30200 1.17333 0.91755 0.94096 0.97881 1.19796 0.99055 1.01003 0.97844 1.20555 0.99773 0.99820 1.00690 1.17506 0.92877 0.91594 0.90595 1.19369 1.04472 0.94209 1.31741 0.90935 1.25798 0.96957 0.98186 0.93132 1.69839 1.26700 1.12831 1.34049 0.86415 0.82937 0.79363 0.78542 1.19751 1.20307 1.18698 1.20937 0.96435 0.99441 0.97606 1.20114 1.01360 0.96770 1.00192 1.24944 0.92921 1.03486 1.01034 1.87886 1.42703 1.08300 1.69238 0.92475 0.92011 0.92631 0.90048 0.92159 0.92306 0.92561 0.90232 0.90014 0.78287 0.89632 0.89041 0.91273 0.86398 0.89356 0.87753 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.05 37.16 0.34 -0.91 16 2 C -0.08 -0.68 2.35 -90.62 -0.21 -0.89 16 3 C -0.15 -1.07 8.97 37.15 0.33 -0.74 16 4 C -0.03 -0.27 2.83 -26.07 -0.07 -0.34 16 5 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 6 C -0.13 -1.41 4.72 -26.41 -0.12 -1.53 16 7 C 0.16 2.27 2.66 -67.61 -0.18 2.08 16 8 H 0.09 1.37 6.24 -51.93 -0.32 1.04 16 9 N -0.75 -12.17 5.03 -51.73 -0.26 -12.43 16 10 C 0.09 1.78 6.66 -83.69 -0.56 1.23 16 11 C -0.15 -3.38 9.82 -39.77 -0.39 -3.77 16 12 C -0.19 -4.59 9.74 -39.26 -0.38 -4.97 16 13 C 0.08 2.06 5.57 -106.79 -0.59 1.47 16 14 C -0.47 -12.58 9.03 -37.87 -0.34 -12.93 16 15 H 0.07 1.89 7.90 -52.49 -0.41 1.47 16 16 C 0.07 1.91 5.14 -17.34 -0.09 1.82 16 17 N -0.81 -21.30 10.97 55.54 0.61 -20.69 16 18 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 21 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 22 C -0.12 -3.20 8.63 -39.26 -0.34 -3.54 16 23 C -0.16 -3.68 9.11 -39.77 -0.36 -4.05 16 24 C -0.07 -1.07 7.08 37.81 0.27 -0.80 16 25 S -0.31 -4.05 21.75 -107.50 -2.34 -6.38 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.60 7.31 -51.93 -0.38 0.22 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.45 7.10 -51.93 -0.37 0.08 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.82 7.47 -51.93 -0.39 0.43 16 34 H 0.08 0.86 7.47 -51.93 -0.39 0.47 16 35 H 0.38 5.51 8.27 -40.82 -0.34 5.17 16 36 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 39 H 0.12 3.17 6.19 -52.49 -0.32 2.84 16 40 H 0.09 1.83 6.14 -52.49 -0.32 1.51 16 41 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 42 H 0.09 1.37 8.05 -51.93 -0.42 0.96 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -27.24 343.58 -11.16 -38.40 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.60 Total: 9.68 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -2.71 Total: -27.86 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.35 Total: -33.12 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -2.34 Total: -6.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.24 -11.16 -38.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277388137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.343 kcal (2) G-P(sol) polarization free energy of solvation -27.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds