Wall clock time and date at job start Tue Mar 31 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46865 * 2 1 4 4 C 1.53000 * 109.46859 * 120.00026 * 2 1 3 5 5 H 1.09003 * 110.69815 * 303.14024 * 4 2 1 6 6 C 1.54266 * 110.94873 * 179.70937 * 4 2 1 7 7 C 1.52334 * 112.58560 * 217.12301 * 6 4 2 8 8 H 1.08992 * 108.75119 * 120.74168 * 7 6 4 9 9 N 1.46501 * 108.86630 * 239.18280 * 7 6 4 10 10 C 1.38857 * 119.99929 * 209.53265 * 9 7 6 11 11 C 1.39565 * 119.84236 * 179.97438 * 10 9 7 12 12 C 1.36338 * 120.16176 * 180.02562 * 11 10 9 13 13 C 1.40890 * 119.83365 * 359.97438 * 12 11 10 14 14 C 1.41142 * 120.15436 * 179.72293 * 13 12 11 15 15 H 1.07999 * 120.00169 * 334.76251 * 14 13 12 16 16 C 1.39867 * 119.99788 * 154.75514 * 14 13 12 17 17 N 1.30896 * 120.00256 * 342.82062 * 16 14 13 18 18 Si 1.86801 * 119.99891 * 162.82455 * 16 14 13 19 19 H 1.48500 * 109.47158 * 89.99631 * 18 16 14 20 20 H 1.48501 * 109.47017 * 210.00300 * 18 16 14 21 21 H 1.48503 * 109.46793 * 329.99946 * 18 16 14 22 22 C 1.40889 * 119.69203 * 359.97438 * 13 12 11 23 23 C 1.36342 * 119.83234 * 0.02562 * 22 13 12 24 24 C 1.54252 * 112.58874 * 359.97438 * 7 6 4 25 25 S 1.83949 * 110.78898 * 66.45722 * 4 2 1 26 26 H 1.09005 * 109.46713 * 60.00159 * 1 2 3 27 27 H 1.08998 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47297 * 299.99893 * 1 2 3 29 29 H 1.09000 * 109.47297 * 240.00107 * 2 1 3 30 30 H 1.09000 * 109.47175 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47704 * 299.99830 * 3 2 1 32 32 H 1.08997 * 109.47567 * 59.99848 * 3 2 1 33 33 H 1.09003 * 108.86680 * 96.30559 * 6 4 2 34 34 H 1.08994 * 108.86697 * 337.94161 * 6 4 2 35 35 H 0.97003 * 120.00513 * 29.53019 * 9 7 6 36 36 H 1.07996 * 119.91839 * 0.02562 * 11 10 9 37 37 H 1.07999 * 120.08624 * 179.97438 * 12 11 10 38 38 H 0.96998 * 120.00496 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.08169 * 179.97438 * 22 13 12 40 40 H 1.07996 * 119.91590 * 179.97438 * 23 22 13 41 41 H 1.09006 * 110.78704 * 142.80108 * 24 7 6 42 42 H 1.09002 * 110.79078 * 266.25688 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6428 -0.2564 2.1516 6 6 3.5821 -0.7475 1.2801 7 6 4.1339 -2.0521 1.8405 8 1 4.7630 -2.5203 1.0836 9 7 4.9534 -1.7530 3.0175 10 6 6.0204 -2.5778 3.3484 11 6 6.7993 -2.2895 4.4700 12 6 7.8487 -3.0947 4.8006 13 6 8.1457 -4.2203 4.0070 14 6 9.2340 -5.0551 4.3397 15 1 10.0637 -4.6603 4.9073 16 6 9.2380 -6.3938 3.9344 17 7 8.1239 -6.9656 3.5535 18 14 10.8333 -7.3656 3.9368 19 1 11.0104 -8.0231 5.2564 20 1 10.7850 -8.3988 2.8712 21 1 11.9727 -6.4472 3.6844 22 6 7.3544 -4.5058 2.8768 23 6 6.3080 -3.6918 2.5583 24 6 3.0212 -3.0404 2.2462 25 16 1.6099 -2.5089 1.1923 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.9364 0.0788 1.8965 34 1 3.9573 -0.6130 0.2657 35 1 4.7508 -0.9788 3.5657 36 1 6.5701 -1.4266 5.0776 37 1 8.4508 -2.8702 5.6686 38 1 8.1265 -7.8941 3.2728 39 1 7.5767 -5.3667 2.2639 40 1 5.7009 -3.9091 1.6920 41 1 3.3113 -4.0655 2.0154 42 1 2.7766 -2.9350 3.3032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277388137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:44 Heat of formation + Delta-G solvation = -5.291738 kcal Electronic energy + Delta-G solvation = -20516.153497 eV Core-core repulsion = 17585.520941 eV Total energy + Delta-G solvation = -2930.632557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -40.09756 -38.54483 -36.87695 -35.23151 -32.99806 -31.38399 -30.17222 -29.30635 -28.02007 -26.62568 -25.34002 -23.34015 -22.35312 -21.42819 -20.56030 -19.16134 -18.11011 -17.89447 -16.86476 -16.42639 -15.90332 -15.87208 -15.63222 -14.95818 -14.70986 -14.45076 -14.29004 -13.93427 -13.91581 -13.75534 -13.56965 -13.31338 -12.99790 -12.91572 -12.73369 -12.68022 -12.31551 -12.27193 -12.12684 -11.90241 -11.69758 -11.60253 -11.55363 -11.21275 -11.11309 -10.84169 -10.28645 -9.40694 -8.76109 -8.55207 -8.18594 -6.02212 0.85510 1.09359 1.18488 1.32725 1.39617 1.51681 1.58791 2.26754 2.82500 2.84585 3.45589 3.60735 3.83819 3.92335 3.98924 4.05732 4.19295 4.31398 4.41705 4.45486 4.50531 4.61083 4.66590 4.81385 4.82999 4.90353 5.00135 5.02114 5.05415 5.10147 5.17335 5.24822 5.27611 5.42303 5.44738 5.45624 5.67770 5.80062 5.95591 6.18612 6.38047 6.64634 6.84877 7.08149 7.12564 7.29004 8.47743 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033895 B = 0.003107 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.889707 B = 9010.779782 C = 9430.446849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.142 4.142 4 C -0.012 4.012 5 H 0.102 0.898 6 C -0.120 4.120 7 C 0.161 3.839 8 H 0.072 0.928 9 N -0.739 5.739 10 C 0.112 3.888 11 C -0.161 4.161 12 C -0.196 4.196 13 C 0.037 3.963 14 C -0.506 4.506 15 H 0.068 0.932 16 C 0.031 3.969 17 N -0.842 5.842 18 Si 0.975 3.025 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.261 1.261 22 C -0.144 4.144 23 C -0.172 4.172 24 C -0.073 4.073 25 S -0.329 6.329 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.399 0.601 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.281 0.719 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 13.900 -6.658 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.094 4.094 3 C -0.201 4.201 4 C -0.140 4.140 5 H 0.120 0.880 6 C -0.160 4.160 7 C 0.053 3.947 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.013 3.987 11 C -0.183 4.183 12 C -0.217 4.217 13 C 0.034 3.966 14 C -0.537 4.537 15 H 0.086 0.914 16 C -0.181 4.181 17 N -0.470 5.470 18 Si 0.796 3.204 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.185 1.185 22 C -0.164 4.164 23 C -0.194 4.194 24 C -0.223 4.223 25 S -0.101 6.101 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.332 12.940 -7.417 20.005 hybrid contribution 1.529 -0.357 0.992 1.857 sum -11.803 12.583 -6.426 18.410 Atomic orbital electron populations 1.21849 0.94346 1.01471 1.02713 1.21065 0.96431 0.96703 0.95194 1.21861 1.01542 0.93823 1.02872 1.24070 0.96488 0.90571 1.02862 0.87993 1.22267 0.93428 0.96614 1.03652 1.21315 0.90954 0.94176 0.88272 0.91023 1.44159 1.31752 1.30768 1.30830 1.17396 0.91763 0.93198 0.96353 1.20099 0.98186 1.01618 0.98378 1.20772 1.00663 0.99587 1.00638 1.17821 0.93942 0.93069 0.91750 1.19597 1.05069 0.95427 1.33612 0.91404 1.26603 1.00256 0.98770 0.92425 1.69910 1.28605 1.13360 1.35167 0.85321 0.78390 0.77781 0.78865 1.18989 1.19411 1.18496 1.20853 0.97976 0.99789 0.97807 1.20246 1.00864 0.97149 1.01144 1.24751 0.93840 1.02696 1.01014 1.88031 1.41984 1.11337 1.68752 0.91201 0.93710 0.92006 0.90712 0.92006 0.91293 0.91842 0.88471 0.89063 0.76545 0.86227 0.88537 0.90828 0.88566 0.87922 0.89569 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.05 71.98 0.65 -1.45 16 2 C -0.07 -1.09 2.35 -10.79 -0.03 -1.11 16 3 C -0.14 -1.56 8.97 71.98 0.65 -0.91 16 4 C -0.01 -0.21 2.83 31.02 0.09 -0.12 16 5 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 6 C -0.12 -2.27 4.72 30.80 0.15 -2.13 16 7 C 0.16 4.25 2.66 45.20 0.12 4.37 16 8 H 0.07 2.16 6.24 -2.39 -0.01 2.15 16 9 N -0.74 -21.98 5.03 -317.58 -1.60 -23.58 16 10 C 0.11 4.50 6.66 38.67 0.26 4.75 16 11 C -0.16 -6.75 9.82 22.15 0.22 -6.54 16 12 C -0.20 -9.65 9.74 22.48 0.22 -9.43 16 13 C 0.04 2.04 5.57 -21.27 -0.12 1.93 16 14 C -0.51 -28.40 9.03 23.38 0.21 -28.18 16 15 H 0.07 3.69 7.90 -2.91 -0.02 3.67 16 16 C 0.03 1.65 5.14 85.23 0.44 2.09 16 17 N -0.84 -46.24 10.97 21.82 0.24 -46.00 16 18 Si 0.97 40.27 29.59 68.60 2.03 42.30 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 22 C -0.14 -7.72 8.63 22.48 0.19 -7.52 16 23 C -0.17 -7.86 9.11 22.15 0.20 -7.66 16 24 C -0.07 -2.04 7.08 72.41 0.51 -1.53 16 25 S -0.33 -8.20 21.75 -56.49 -1.23 -9.43 16 26 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.04 0.80 7.31 -2.39 -0.02 0.78 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 0.68 7.10 -2.39 -0.02 0.66 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 1.57 7.47 -2.39 -0.02 1.55 16 34 H 0.09 1.62 7.47 -2.39 -0.02 1.61 16 35 H 0.40 9.91 8.27 -92.71 -0.77 9.14 16 36 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 37 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 38 H 0.28 14.11 8.30 -92.71 -0.77 13.35 16 39 H 0.10 5.48 6.19 -2.91 -0.02 5.46 16 40 H 0.10 4.30 6.14 -2.91 -0.02 4.28 16 41 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 42 H 0.09 2.50 8.05 -2.39 -0.02 2.48 16 Total: -1.00 -61.04 343.58 3.44 -57.60 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.24 Total: 32.56 kcal Atomic # 6 Polarization: -57.21 SS G_CDS: 3.76 Total: -53.45 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -1.36 Total: -69.58 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.23 Total: -9.43 kcal Total: -61.04 3.44 -57.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277388137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.306 kcal (2) G-P(sol) polarization free energy of solvation -61.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds