Wall clock time and date at job start Tue Mar 31 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53008 * 109.47138 * 2 1 4 4 C 1.53001 * 109.47532 * 120.00476 * 2 1 3 5 5 H 1.09004 * 110.99113 * 309.21165 * 4 2 1 6 6 C 1.55150 * 111.13008 * 185.00129 * 4 2 1 7 7 C 1.52946 * 108.95723 * 200.60351 * 6 4 2 8 8 H 1.08999 * 108.88798 * 269.30499 * 7 6 4 9 9 N 1.46504 * 108.88286 * 150.89627 * 7 6 4 10 10 C 1.38867 * 119.99711 * 150.56918 * 9 7 6 11 11 C 1.39562 * 119.83964 * 359.71837 * 10 9 7 12 12 C 1.36340 * 120.15680 * 179.76059 * 11 10 9 13 13 C 1.40892 * 119.83731 * 0.53799 * 12 11 10 14 14 C 1.41143 * 120.15585 * 179.74000 * 13 12 11 15 15 H 1.08001 * 119.99718 * 204.59005 * 14 13 12 16 16 C 1.39858 * 119.99709 * 24.58970 * 14 13 12 17 17 N 1.30901 * 120.00415 * 17.97144 * 16 14 13 18 18 Si 1.86804 * 119.99635 * 197.96695 * 16 14 13 19 19 H 1.48500 * 109.47191 * 60.00305 * 18 16 14 20 20 H 1.48499 * 109.47275 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47218 * 300.00428 * 18 16 14 22 22 C 1.40883 * 119.68629 * 359.71797 * 13 12 11 23 23 C 1.36341 * 119.83883 * 359.97438 * 22 13 12 24 24 C 1.53699 * 112.49073 * 30.10420 * 7 6 4 25 25 S 1.83396 * 105.06011 * 357.11720 * 24 7 6 26 26 H 1.09007 * 109.47320 * 299.99607 * 1 2 3 27 27 H 1.08996 * 109.47652 * 59.99780 * 1 2 3 28 28 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47091 * 240.00654 * 2 1 3 30 30 H 1.08998 * 109.46985 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47029 * 300.00601 * 3 2 1 32 32 H 1.08999 * 109.46596 * 60.00351 * 3 2 1 33 33 H 1.09002 * 109.60502 * 80.67765 * 6 4 2 34 34 H 1.09001 * 109.60818 * 320.53569 * 6 4 2 35 35 H 0.97000 * 120.00255 * 330.56240 * 9 7 6 36 36 H 1.07997 * 119.92601 * 0.02562 * 11 10 9 37 37 H 1.07999 * 120.08551 * 180.23375 * 12 11 10 38 38 H 0.97003 * 120.00151 * 179.97438 * 17 16 14 39 39 H 1.08007 * 120.08074 * 180.02562 * 22 13 12 40 40 H 1.07997 * 119.91945 * 180.02562 * 23 22 13 41 41 H 1.08999 * 110.34279 * 116.04495 * 24 7 6 42 42 H 1.09002 * 110.33873 * 238.19340 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5636 -0.3298 2.1480 6 6 3.5856 -0.6354 1.3526 7 6 4.0851 -1.7530 2.2696 8 1 4.1228 -1.3794 3.2929 9 7 5.4383 -2.1348 1.8580 10 6 6.3360 -2.6281 2.7957 11 6 5.9474 -2.7532 4.1303 12 6 6.8220 -3.2413 5.0554 13 6 8.1243 -3.6091 4.6633 14 6 9.0368 -4.1100 5.6165 15 1 10.0995 -4.0211 5.4454 16 6 8.5649 -4.7215 6.7824 17 7 7.3287 -5.1476 6.8438 18 14 9.6987 -4.9301 8.2522 19 1 10.1660 -3.5970 8.7102 20 1 8.9633 -5.6024 9.3533 21 1 10.8685 -5.7572 7.8616 22 6 8.5112 -3.4750 3.3153 23 6 7.6241 -2.9913 2.3999 24 6 3.1826 -2.9963 2.2266 25 16 1.7988 -2.5423 1.1119 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8932 -0.5137 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.8713 0.3319 1.7660 34 1 4.0256 -0.7510 0.3621 35 1 5.7072 -2.0431 0.9305 36 1 4.9503 -2.4667 4.4302 37 1 6.5188 -3.3411 6.0872 38 1 7.0015 -5.5720 7.6523 39 1 9.5078 -3.7554 3.0077 40 1 7.9192 -2.8884 1.3661 41 1 3.7300 -3.8482 1.8234 42 1 2.8063 -3.2260 3.2235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277388158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:56 Heat of formation + Delta-G solvation = 6.204096 kcal Electronic energy + Delta-G solvation = -20510.466339 eV Core-core repulsion = 17580.332280 eV Total energy + Delta-G solvation = -2930.134060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.57919 -37.30075 -35.65076 -33.52927 -31.56198 -29.54894 -28.73117 -27.96171 -27.41166 -25.12308 -23.86172 -21.79810 -20.80935 -20.08705 -19.57639 -17.26484 -17.05199 -16.17170 -15.66928 -15.02889 -14.83677 -14.59042 -14.17357 -13.84040 -13.55404 -13.20459 -12.83206 -12.66386 -12.46325 -12.38402 -12.29369 -11.94396 -11.89041 -11.54489 -11.44086 -11.33637 -11.08625 -11.03228 -10.94322 -10.78863 -10.62305 -10.51051 -9.87684 -9.74179 -9.33427 -9.26495 -8.60848 -7.65091 -7.54023 -6.68215 -6.45493 -4.07437 1.85764 2.38841 2.89789 3.06158 3.12451 3.15524 3.32204 4.02182 4.04122 4.43748 4.53799 4.70972 4.77343 4.89755 5.02807 5.08932 5.19866 5.32898 5.39315 5.40301 5.56951 5.60986 5.68181 5.77373 5.79703 5.83788 5.98570 6.03177 6.10713 6.13435 6.23547 6.29368 6.86579 6.89291 7.15941 7.31765 7.50072 7.64504 7.79007 8.10990 8.23603 8.43275 8.62920 8.74712 9.02364 9.10688 10.33785 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033596 B = 0.003083 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.224419 B = 9078.430101 C = 9374.732590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 C -0.146 4.146 4 C -0.027 4.027 5 H 0.095 0.905 6 C -0.125 4.125 7 C 0.158 3.842 8 H 0.083 0.917 9 N -0.751 5.751 10 C 0.086 3.914 11 C -0.163 4.163 12 C -0.125 4.125 13 C 0.077 3.923 14 C -0.467 4.467 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.806 5.806 18 Si 0.903 3.097 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.268 1.268 22 C -0.188 4.188 23 C -0.154 4.154 24 C -0.079 4.079 25 S -0.309 6.309 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.385 0.615 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.277 0.723 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.847 9.716 -9.413 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 C -0.205 4.205 4 C -0.156 4.156 5 H 0.114 0.886 6 C -0.164 4.164 7 C 0.049 3.951 8 H 0.101 0.899 9 N -0.386 5.386 10 C -0.011 4.011 11 C -0.184 4.184 12 C -0.145 4.145 13 C 0.074 3.926 14 C -0.498 4.498 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.433 5.433 18 Si 0.728 3.272 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.192 1.192 22 C -0.209 4.209 23 C -0.176 4.176 24 C -0.229 4.229 25 S -0.082 6.082 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.219 0.781 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.124 0.876 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.914 8.882 -9.702 17.747 hybrid contribution 1.341 0.298 1.104 1.762 sum -10.574 9.180 -8.598 16.432 Atomic orbital electron populations 1.21864 0.94625 1.02275 1.01780 1.20995 0.96171 0.95895 0.96405 1.21894 1.01504 0.95108 1.01983 1.24142 0.97647 0.92314 1.01508 0.88634 1.22676 0.93032 0.99435 1.01292 1.21070 0.83842 0.90759 0.99419 0.89901 1.44023 1.10063 1.75504 1.08999 1.17327 0.89861 1.04734 0.89157 1.20099 0.98881 1.07390 0.92062 1.20934 0.94551 1.00319 0.98725 1.17502 0.92688 0.91327 0.91072 1.19351 0.94311 1.34042 1.02107 0.90934 1.25799 0.95380 0.93336 0.99534 1.69842 1.16421 1.29013 1.28037 0.86457 0.80857 0.79257 0.80596 1.19064 1.20554 1.19236 1.20549 0.98599 1.08411 0.93301 1.19798 0.93129 1.07069 0.97613 1.24763 0.95083 1.02666 1.00356 1.87748 1.46966 1.07999 1.65485 0.92558 0.92478 0.92135 0.90126 0.92112 0.92349 0.92465 0.89808 0.90100 0.78136 0.89459 0.86390 0.91209 0.89029 0.89577 0.87632 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.11 37.15 0.34 -0.88 16 2 C -0.07 -0.65 2.53 -90.62 -0.23 -0.88 16 3 C -0.15 -1.07 8.85 37.16 0.33 -0.74 16 4 C -0.03 -0.28 2.84 -25.59 -0.07 -0.35 16 5 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 6 C -0.12 -1.37 4.26 -25.62 -0.11 -1.48 16 7 C 0.16 2.23 2.70 -67.59 -0.18 2.04 16 8 H 0.08 1.26 6.21 -51.93 -0.32 0.94 16 9 N -0.75 -12.30 4.99 -51.70 -0.26 -12.56 16 10 C 0.09 1.79 6.65 -83.69 -0.56 1.23 16 11 C -0.16 -3.68 9.11 -39.77 -0.36 -4.04 16 12 C -0.13 -3.23 8.64 -39.26 -0.34 -3.56 16 13 C 0.08 2.06 5.57 -106.79 -0.60 1.46 16 14 C -0.47 -12.58 9.03 -37.87 -0.34 -12.93 16 15 H 0.07 1.89 7.91 -52.49 -0.41 1.47 16 16 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 17 N -0.81 -21.24 10.96 55.54 0.61 -20.63 16 18 Si 0.90 19.11 29.60 -169.99 -5.03 14.08 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.19 -4.60 9.74 -39.26 -0.38 -4.99 16 23 C -0.15 -3.38 9.82 -39.77 -0.39 -3.77 16 24 C -0.08 -1.14 7.11 37.52 0.27 -0.88 16 25 S -0.31 -4.07 22.19 -107.50 -2.39 -6.46 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 29 H 0.08 0.77 8.13 -51.93 -0.42 0.34 16 30 H 0.06 0.45 6.98 -51.93 -0.36 0.09 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 34 H 0.08 0.88 7.63 -51.93 -0.40 0.48 16 35 H 0.39 5.72 8.34 -40.82 -0.34 5.38 16 36 H 0.09 1.79 6.13 -52.49 -0.32 1.47 16 37 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.11 1.72 7.89 -51.93 -0.41 1.31 16 42 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -27.24 344.28 -11.23 -38.47 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.63 Total: 9.85 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -2.72 Total: -27.94 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.35 Total: -33.18 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -2.39 Total: -6.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.24 -11.23 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277388158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.670 kcal (2) G-P(sol) polarization free energy of solvation -27.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds