Wall clock time and date at job start Tue Mar 31 2020 06:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53008 * 109.47138 * 2 1 4 4 C 1.53001 * 109.47532 * 120.00476 * 2 1 3 5 5 H 1.09004 * 110.99113 * 309.21165 * 4 2 1 6 6 C 1.55150 * 111.13008 * 185.00129 * 4 2 1 7 7 C 1.52946 * 108.95723 * 200.60351 * 6 4 2 8 8 H 1.08999 * 108.88798 * 269.30499 * 7 6 4 9 9 N 1.46504 * 108.88286 * 150.89627 * 7 6 4 10 10 C 1.38867 * 119.99711 * 150.56918 * 9 7 6 11 11 C 1.39562 * 119.83964 * 359.71837 * 10 9 7 12 12 C 1.36340 * 120.15680 * 179.76059 * 11 10 9 13 13 C 1.40892 * 119.83731 * 0.53799 * 12 11 10 14 14 C 1.41143 * 120.15585 * 179.74000 * 13 12 11 15 15 H 1.08001 * 119.99718 * 204.59005 * 14 13 12 16 16 C 1.39858 * 119.99709 * 24.58970 * 14 13 12 17 17 N 1.30901 * 120.00415 * 17.97144 * 16 14 13 18 18 Si 1.86804 * 119.99635 * 197.96695 * 16 14 13 19 19 H 1.48500 * 109.47191 * 60.00305 * 18 16 14 20 20 H 1.48499 * 109.47275 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47218 * 300.00428 * 18 16 14 22 22 C 1.40883 * 119.68629 * 359.71797 * 13 12 11 23 23 C 1.36341 * 119.83883 * 359.97438 * 22 13 12 24 24 C 1.53699 * 112.49073 * 30.10420 * 7 6 4 25 25 S 1.83396 * 105.06011 * 357.11720 * 24 7 6 26 26 H 1.09007 * 109.47320 * 299.99607 * 1 2 3 27 27 H 1.08996 * 109.47652 * 59.99780 * 1 2 3 28 28 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47091 * 240.00654 * 2 1 3 30 30 H 1.08998 * 109.46985 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47029 * 300.00601 * 3 2 1 32 32 H 1.08999 * 109.46596 * 60.00351 * 3 2 1 33 33 H 1.09002 * 109.60502 * 80.67765 * 6 4 2 34 34 H 1.09001 * 109.60818 * 320.53569 * 6 4 2 35 35 H 0.97000 * 120.00255 * 330.56240 * 9 7 6 36 36 H 1.07997 * 119.92601 * 0.02562 * 11 10 9 37 37 H 1.07999 * 120.08551 * 180.23375 * 12 11 10 38 38 H 0.97003 * 120.00151 * 179.97438 * 17 16 14 39 39 H 1.08007 * 120.08074 * 180.02562 * 22 13 12 40 40 H 1.07997 * 119.91945 * 180.02562 * 23 22 13 41 41 H 1.08999 * 110.34279 * 116.04495 * 24 7 6 42 42 H 1.09002 * 110.33873 * 238.19340 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5636 -0.3298 2.1480 6 6 3.5856 -0.6354 1.3526 7 6 4.0851 -1.7530 2.2696 8 1 4.1228 -1.3794 3.2929 9 7 5.4383 -2.1348 1.8580 10 6 6.3360 -2.6281 2.7957 11 6 5.9474 -2.7532 4.1303 12 6 6.8220 -3.2413 5.0554 13 6 8.1243 -3.6091 4.6633 14 6 9.0368 -4.1100 5.6165 15 1 10.0995 -4.0211 5.4454 16 6 8.5649 -4.7215 6.7824 17 7 7.3287 -5.1476 6.8438 18 14 9.6987 -4.9301 8.2522 19 1 10.1660 -3.5970 8.7102 20 1 8.9633 -5.6024 9.3533 21 1 10.8685 -5.7572 7.8616 22 6 8.5112 -3.4750 3.3153 23 6 7.6241 -2.9913 2.3999 24 6 3.1826 -2.9963 2.2266 25 16 1.7988 -2.5423 1.1119 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8932 -0.5137 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.8713 0.3319 1.7660 34 1 4.0256 -0.7510 0.3621 35 1 5.7072 -2.0431 0.9305 36 1 4.9503 -2.4667 4.4302 37 1 6.5188 -3.3411 6.0872 38 1 7.0015 -5.5720 7.6523 39 1 9.5078 -3.7554 3.0077 40 1 7.9192 -2.8884 1.3661 41 1 3.7300 -3.8482 1.8234 42 1 2.8063 -3.2260 3.2235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277388158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:53 Heat of formation + Delta-G solvation = -5.956502 kcal Electronic energy + Delta-G solvation = -20510.993662 eV Core-core repulsion = 17580.332280 eV Total energy + Delta-G solvation = -2930.661383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -40.09494 -38.52449 -36.87494 -35.23695 -33.01727 -31.37991 -30.19731 -29.28805 -28.01144 -26.61222 -25.21424 -23.36993 -22.38291 -21.13879 -20.85828 -19.16632 -18.25890 -17.52740 -16.99542 -16.69654 -15.97276 -15.75263 -15.47894 -15.07552 -14.57296 -14.55955 -14.20715 -13.98988 -13.92188 -13.79897 -13.41944 -13.18059 -13.10582 -12.92792 -12.75436 -12.74143 -12.37263 -12.30618 -12.10827 -11.95786 -11.64185 -11.58490 -11.53857 -11.19228 -11.11651 -10.83374 -10.31774 -9.41004 -8.73554 -8.55894 -8.19264 -6.02088 0.84206 1.09522 1.18544 1.35766 1.39654 1.50259 1.59569 2.26536 2.75049 2.83300 3.53217 3.62297 3.83997 3.93876 3.99382 4.05322 4.12121 4.31938 4.40788 4.45216 4.50596 4.59777 4.70177 4.75771 4.84366 4.94424 4.99213 5.02471 5.04343 5.08081 5.16119 5.24756 5.27263 5.42474 5.44468 5.46470 5.67748 5.79394 5.95152 6.18008 6.38048 6.64634 6.84623 7.07725 7.11624 7.27990 8.46859 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033596 B = 0.003083 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.224419 B = 9078.430101 C = 9374.732590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.143 4.143 4 C -0.014 4.014 5 H 0.103 0.897 6 C -0.116 4.116 7 C 0.158 3.842 8 H 0.074 0.926 9 N -0.739 5.739 10 C 0.111 3.889 11 C -0.171 4.171 12 C -0.145 4.145 13 C 0.037 3.963 14 C -0.506 4.506 15 H 0.068 0.932 16 C 0.032 3.968 17 N -0.841 5.841 18 Si 0.975 3.025 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.262 1.262 22 C -0.197 4.197 23 C -0.161 4.161 24 C -0.077 4.077 25 S -0.328 6.328 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.398 0.602 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.621 11.485 -10.668 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 C -0.202 4.202 4 C -0.142 4.142 5 H 0.121 0.879 6 C -0.155 4.155 7 C 0.049 3.951 8 H 0.092 0.908 9 N -0.374 5.374 10 C 0.012 3.988 11 C -0.193 4.193 12 C -0.165 4.165 13 C 0.034 3.966 14 C -0.538 4.538 15 H 0.086 0.914 16 C -0.180 4.180 17 N -0.469 5.469 18 Si 0.797 3.203 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.187 1.187 22 C -0.218 4.218 23 C -0.183 4.183 24 C -0.228 4.228 25 S -0.101 6.101 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.233 0.767 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.136 0.864 41 H 0.104 0.896 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.718 10.667 -11.003 19.915 hybrid contribution 1.426 -0.168 1.294 1.933 sum -11.292 10.499 -9.709 18.221 Atomic orbital electron populations 1.21853 0.94246 1.01528 1.02776 1.20993 0.96450 0.96600 0.95053 1.21877 1.01571 0.93842 1.02873 1.24280 0.97238 0.89829 1.02899 0.87863 1.22602 0.93321 0.98671 1.00933 1.21242 0.82464 0.91471 0.99889 0.90754 1.44029 1.10274 1.74220 1.08833 1.17392 0.90143 1.02014 0.89226 1.20245 0.99250 1.07263 0.92524 1.20864 0.95161 1.01912 0.98540 1.17821 0.93452 0.93010 0.92286 1.19580 0.94250 1.36005 1.03925 0.91411 1.26600 0.96967 0.92547 1.01869 1.69911 1.18091 1.29929 1.28933 0.85364 0.78755 0.79269 0.76934 1.18707 1.19522 1.18680 1.20756 0.99433 1.08470 0.93101 1.20093 0.93069 1.06451 0.98726 1.24574 0.95713 1.02155 1.00324 1.87868 1.46199 1.11172 1.64829 0.91949 0.91181 0.93712 0.90702 0.91964 0.91257 0.91880 0.88067 0.89305 0.76685 0.87708 0.88403 0.90767 0.88608 0.86425 0.89615 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.11 71.98 0.66 -1.39 16 2 C -0.07 -1.03 2.53 -10.79 -0.03 -1.06 16 3 C -0.14 -1.57 8.85 71.98 0.64 -0.93 16 4 C -0.01 -0.25 2.84 31.33 0.09 -0.16 16 5 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 6 C -0.12 -2.19 4.26 31.31 0.13 -2.05 16 7 C 0.16 4.12 2.70 45.21 0.12 4.24 16 8 H 0.07 2.12 6.21 -2.39 -0.01 2.11 16 9 N -0.74 -22.51 4.99 -317.50 -1.59 -24.09 16 10 C 0.11 4.50 6.65 38.67 0.26 4.76 16 11 C -0.17 -7.75 9.11 22.15 0.20 -7.55 16 12 C -0.14 -7.70 8.64 22.48 0.19 -7.51 16 13 C 0.04 2.05 5.57 -21.27 -0.12 1.93 16 14 C -0.51 -28.39 9.03 23.38 0.21 -28.18 16 15 H 0.07 3.68 7.91 -2.91 -0.02 3.66 16 16 C 0.03 1.70 5.13 85.22 0.44 2.14 16 17 N -0.84 -45.91 10.96 21.81 0.24 -45.68 16 18 Si 0.98 40.09 29.60 68.60 2.03 42.12 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 22 C -0.20 -9.76 9.74 22.47 0.22 -9.54 16 23 C -0.16 -6.87 9.82 22.15 0.22 -6.65 16 24 C -0.08 -2.19 7.11 72.22 0.51 -1.67 16 25 S -0.33 -8.17 22.19 -56.49 -1.25 -9.43 16 26 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.04 0.77 7.68 -2.39 -0.02 0.75 16 29 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 30 H 0.06 0.68 6.98 -2.39 -0.02 0.67 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 1.65 7.79 -2.39 -0.02 1.63 16 34 H 0.09 1.60 7.63 -2.39 -0.02 1.58 16 35 H 0.40 10.54 8.34 -92.71 -0.77 9.76 16 36 H 0.11 4.28 6.13 -2.91 -0.02 4.27 16 37 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 38 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 39 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 41 H 0.09 2.77 7.89 -2.39 -0.02 2.75 16 42 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -60.77 344.28 3.40 -57.36 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.23 Total: 33.34 kcal Atomic # 6 Polarization: -57.37 SS G_CDS: 3.74 Total: -53.63 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -1.35 Total: -69.77 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.25 Total: -9.43 kcal Total: -60.77 3.40 -57.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277388158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.406 kcal (2) G-P(sol) polarization free energy of solvation -60.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds