Wall clock time and date at job start Tue Mar 31 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47318 * 2 1 4 4 C 1.53005 * 109.46990 * 119.99915 * 2 1 3 5 5 H 1.09002 * 110.69915 * 56.68350 * 4 2 1 6 6 C 1.54255 * 110.78752 * 179.97438 * 4 2 1 7 7 C 1.52330 * 112.58980 * 142.99539 * 6 4 2 8 8 H 1.08995 * 108.87393 * 120.81829 * 7 6 4 9 9 N 1.46499 * 108.86952 * 239.32809 * 7 6 4 10 10 C 1.38857 * 120.00248 * 207.17314 * 9 7 6 11 11 C 1.39560 * 119.83890 * 359.71672 * 10 9 7 12 12 C 1.36341 * 120.16020 * 179.72500 * 11 10 9 13 13 C 1.40880 * 119.83472 * 0.55110 * 12 11 10 14 14 C 1.41141 * 120.15882 * 179.70001 * 13 12 11 15 15 H 1.07994 * 120.00426 * 204.63040 * 14 13 12 16 16 C 1.39870 * 119.99519 * 24.63187 * 14 13 12 17 17 N 1.30896 * 120.00243 * 17.95336 * 16 14 13 18 18 Si 1.86799 * 119.99796 * 197.95539 * 16 14 13 19 19 H 1.48506 * 109.47257 * 89.99805 * 18 16 14 20 20 H 1.48497 * 109.47331 * 209.99961 * 18 16 14 21 21 H 1.48501 * 109.47276 * 330.00017 * 18 16 14 22 22 C 1.40884 * 119.69209 * 359.72411 * 13 12 11 23 23 C 1.36345 * 119.83373 * 359.97438 * 22 13 12 24 24 C 1.54266 * 112.58694 * 359.97438 * 7 6 4 25 25 S 1.83955 * 110.95092 * 293.25479 * 4 2 1 26 26 H 1.08999 * 109.47124 * 300.00234 * 1 2 3 27 27 H 1.09000 * 109.46772 * 59.99890 * 1 2 3 28 28 H 1.08999 * 109.47290 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47124 * 239.99766 * 2 1 3 30 30 H 1.09000 * 109.47289 * 299.99793 * 3 2 1 31 31 H 1.09008 * 109.47205 * 60.00025 * 3 2 1 32 32 H 1.09004 * 109.47167 * 179.97438 * 3 2 1 33 33 H 1.08997 * 108.86790 * 22.17431 * 6 4 2 34 34 H 1.09002 * 108.75317 * 263.73068 * 6 4 2 35 35 H 0.97003 * 119.99988 * 27.16405 * 9 7 6 36 36 H 1.08002 * 119.92554 * 359.97438 * 11 10 9 37 37 H 1.08001 * 120.08465 * 180.27419 * 12 11 10 38 38 H 0.97007 * 120.00118 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.08631 * 179.97438 * 22 13 12 40 40 H 1.07994 * 119.92048 * 180.02562 * 23 22 13 41 41 H 1.08998 * 110.78505 * 93.74447 * 24 7 6 42 42 H 1.08997 * 110.78556 * 217.20428 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6404 -1.7341 1.2995 6 6 3.5821 -0.7396 1.2797 7 6 4.1417 -0.5746 2.6869 8 1 4.7500 -1.4460 2.9288 9 7 4.9903 0.6191 2.7224 10 6 6.0312 0.7040 3.6375 11 6 6.2624 -0.3473 4.5258 12 6 7.2861 -0.2733 5.4232 13 6 8.1042 0.8730 5.4602 14 6 9.1620 0.9595 6.3907 15 1 9.5264 1.9261 6.7057 16 6 9.7382 -0.2066 6.9048 17 7 9.5620 -1.3493 6.2910 18 14 10.7591 -0.1335 8.4674 19 1 9.8788 -0.3463 9.6443 20 1 11.7992 -1.1926 8.4292 21 1 11.4109 1.1969 8.5710 22 6 7.8614 1.9329 4.5643 23 6 6.8379 1.8424 3.6681 24 6 3.0347 -0.4273 3.7512 25 16 1.6198 0.2226 2.7713 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 3.9567 0.0707 0.6542 34 1 3.9295 -1.6886 0.8714 35 1 4.8250 1.3501 2.1066 36 1 5.6313 -1.2234 4.4996 37 1 7.4666 -1.0895 6.1071 38 1 9.9619 -2.1580 6.6474 39 1 8.4844 2.8147 4.5874 40 1 6.6508 2.6539 2.9804 41 1 2.7886 -1.3944 4.1897 42 1 3.3313 0.2840 4.5219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277388172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:01 Heat of formation + Delta-G solvation = 11.278125 kcal Electronic energy + Delta-G solvation = -20735.870535 eV Core-core repulsion = 17805.956502 eV Total energy + Delta-G solvation = -2929.914033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.65 seconds Orbital eigenvalues (eV) -38.61248 -37.31191 -35.57437 -33.49901 -31.51653 -29.53357 -28.68495 -27.96772 -27.29947 -25.19653 -23.89059 -21.70766 -20.72002 -20.19184 -19.48700 -17.24242 -16.89360 -15.87289 -15.70486 -15.30125 -14.93910 -14.64954 -14.23401 -13.84749 -13.52658 -13.04305 -12.73006 -12.55258 -12.40352 -12.22281 -12.05230 -11.97640 -11.77110 -11.66481 -11.56579 -11.20688 -11.05523 -10.99099 -10.93245 -10.70439 -10.61584 -10.48789 -9.76623 -9.69508 -9.30576 -9.22812 -8.60695 -7.55981 -7.51670 -6.66464 -6.42356 -4.05600 1.91846 2.40382 2.89717 3.08070 3.14301 3.17697 3.33368 4.04040 4.12460 4.46730 4.50747 4.73264 4.78980 4.91454 4.99922 5.12647 5.28627 5.41587 5.44439 5.53509 5.54744 5.69351 5.75801 5.80804 5.85261 5.88145 5.96701 6.11502 6.16267 6.25659 6.29380 6.31248 6.89892 6.91647 7.18093 7.33780 7.53006 7.66780 7.81665 8.13240 8.26593 8.46374 8.66822 8.77576 9.04263 9.12943 10.35264 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.039458 B = 0.003181 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.445453 B = 8799.920653 C = 9034.902392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C -0.154 4.154 4 C -0.031 4.031 5 H 0.092 0.908 6 C -0.135 4.135 7 C 0.162 3.838 8 H 0.083 0.917 9 N -0.748 5.748 10 C 0.088 3.912 11 C -0.164 4.164 12 C -0.125 4.125 13 C 0.076 3.924 14 C -0.467 4.467 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.807 5.807 18 Si 0.903 3.097 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.187 4.187 23 C -0.155 4.155 24 C -0.081 4.081 25 S -0.295 6.295 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.386 0.614 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.276 0.724 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.590 -1.012 -10.123 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 C -0.212 4.212 4 C -0.160 4.160 5 H 0.110 0.890 6 C -0.174 4.174 7 C 0.053 3.947 8 H 0.101 0.899 9 N -0.384 5.384 10 C -0.008 4.008 11 C -0.186 4.186 12 C -0.145 4.145 13 C 0.073 3.927 14 C -0.498 4.498 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.434 5.434 18 Si 0.728 3.272 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.189 1.189 22 C -0.207 4.207 23 C -0.177 4.177 24 C -0.231 4.231 25 S -0.068 6.068 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.219 0.781 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.437 -0.644 -9.759 17.438 hybrid contribution 1.394 -0.699 0.304 1.589 sum -13.043 -1.343 -9.455 16.166 Atomic orbital electron populations 1.21863 0.94689 1.01817 1.02156 1.20961 0.96114 0.96875 0.95606 1.22016 1.01382 0.95287 1.02467 1.24014 0.97086 1.00364 0.94509 0.89011 1.22492 0.93139 1.04059 0.97696 1.21013 0.91214 0.91127 0.91384 0.89901 1.44098 1.33785 1.19008 1.41461 1.17336 0.92282 0.96045 0.95151 1.20100 1.01535 0.97006 0.99963 1.20933 0.94155 0.99914 0.99493 1.17498 0.92357 0.91294 0.91584 1.19388 1.15277 0.93169 1.21951 0.90926 1.25794 0.95928 0.95041 0.97284 1.69852 1.37819 0.99990 1.35782 0.86405 0.79510 0.78829 0.82446 1.19535 1.20580 1.18851 1.20551 1.00490 1.00643 0.99025 1.19800 0.99144 0.96427 1.02359 1.24966 0.93771 1.03621 1.00703 1.87772 1.42111 1.63330 1.13600 0.91967 0.92527 0.92716 0.90366 0.92973 0.90777 0.92249 0.89316 0.90448 0.78092 0.89450 0.86425 0.91325 0.89077 0.89605 0.89751 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.06 37.16 0.34 -0.91 16 2 C -0.08 -0.68 2.78 -90.62 -0.25 -0.93 16 3 C -0.15 -1.46 8.63 37.15 0.32 -1.14 16 4 C -0.03 -0.32 3.11 -26.07 -0.08 -0.40 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.13 -1.49 5.55 -26.42 -0.15 -1.63 16 7 C 0.16 2.25 2.66 -67.61 -0.18 2.07 16 8 H 0.08 1.26 6.38 -51.93 -0.33 0.92 16 9 N -0.75 -12.28 5.03 -51.73 -0.26 -12.54 16 10 C 0.09 1.85 6.58 -83.69 -0.55 1.30 16 11 C -0.16 -3.70 9.03 -39.77 -0.36 -4.06 16 12 C -0.12 -3.22 8.64 -39.27 -0.34 -3.56 16 13 C 0.08 2.02 5.57 -106.80 -0.60 1.43 16 14 C -0.47 -12.62 9.03 -37.87 -0.34 -12.96 16 15 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 16 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 17 N -0.81 -21.26 10.96 55.54 0.61 -20.66 16 18 Si 0.90 19.19 29.60 -169.99 -5.03 14.16 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 22 C -0.19 -4.58 9.74 -39.26 -0.38 -4.97 16 23 C -0.16 -3.42 9.82 -39.77 -0.39 -3.81 16 24 C -0.08 -1.12 6.89 37.82 0.26 -0.86 16 25 S -0.29 -3.77 20.10 -107.50 -2.16 -5.93 16 26 H 0.06 0.61 7.33 -51.93 -0.38 0.23 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.82 6.78 -51.92 -0.35 0.46 16 32 H 0.06 0.58 6.12 -51.93 -0.32 0.26 16 33 H 0.09 0.98 5.00 -51.93 -0.26 0.72 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.39 5.86 8.22 -40.82 -0.34 5.53 16 36 H 0.09 1.78 6.10 -52.49 -0.32 1.46 16 37 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 39 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.11 1.80 7.96 -51.93 -0.41 1.39 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -27.18 338.61 -10.92 -38.10 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.39 Total: 10.36 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -2.79 Total: -28.59 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.35 Total: -33.19 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -2.16 Total: -5.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.18 -10.92 -38.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277388172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.375 kcal (2) G-P(sol) polarization free energy of solvation -27.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.65 seconds