Wall clock time and date at job start Tue Mar 31 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47318 * 2 1 4 4 C 1.53005 * 109.46990 * 119.99915 * 2 1 3 5 5 H 1.09002 * 110.69915 * 56.68350 * 4 2 1 6 6 C 1.54255 * 110.78752 * 179.97438 * 4 2 1 7 7 C 1.52330 * 112.58980 * 142.99539 * 6 4 2 8 8 H 1.08995 * 108.87393 * 120.81829 * 7 6 4 9 9 N 1.46499 * 108.86952 * 239.32809 * 7 6 4 10 10 C 1.38857 * 120.00248 * 207.17314 * 9 7 6 11 11 C 1.39560 * 119.83890 * 359.71672 * 10 9 7 12 12 C 1.36341 * 120.16020 * 179.72500 * 11 10 9 13 13 C 1.40880 * 119.83472 * 0.55110 * 12 11 10 14 14 C 1.41141 * 120.15882 * 179.70001 * 13 12 11 15 15 H 1.07994 * 120.00426 * 204.63040 * 14 13 12 16 16 C 1.39870 * 119.99519 * 24.63187 * 14 13 12 17 17 N 1.30896 * 120.00243 * 17.95336 * 16 14 13 18 18 Si 1.86799 * 119.99796 * 197.95539 * 16 14 13 19 19 H 1.48506 * 109.47257 * 89.99805 * 18 16 14 20 20 H 1.48497 * 109.47331 * 209.99961 * 18 16 14 21 21 H 1.48501 * 109.47276 * 330.00017 * 18 16 14 22 22 C 1.40884 * 119.69209 * 359.72411 * 13 12 11 23 23 C 1.36345 * 119.83373 * 359.97438 * 22 13 12 24 24 C 1.54266 * 112.58694 * 359.97438 * 7 6 4 25 25 S 1.83955 * 110.95092 * 293.25479 * 4 2 1 26 26 H 1.08999 * 109.47124 * 300.00234 * 1 2 3 27 27 H 1.09000 * 109.46772 * 59.99890 * 1 2 3 28 28 H 1.08999 * 109.47290 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47124 * 239.99766 * 2 1 3 30 30 H 1.09000 * 109.47289 * 299.99793 * 3 2 1 31 31 H 1.09008 * 109.47205 * 60.00025 * 3 2 1 32 32 H 1.09004 * 109.47167 * 179.97438 * 3 2 1 33 33 H 1.08997 * 108.86790 * 22.17431 * 6 4 2 34 34 H 1.09002 * 108.75317 * 263.73068 * 6 4 2 35 35 H 0.97003 * 119.99988 * 27.16405 * 9 7 6 36 36 H 1.08002 * 119.92554 * 359.97438 * 11 10 9 37 37 H 1.08001 * 120.08465 * 180.27419 * 12 11 10 38 38 H 0.97007 * 120.00118 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.08631 * 179.97438 * 22 13 12 40 40 H 1.07994 * 119.92048 * 180.02562 * 23 22 13 41 41 H 1.08998 * 110.78505 * 93.74447 * 24 7 6 42 42 H 1.08997 * 110.78556 * 217.20428 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6404 -1.7341 1.2995 6 6 3.5821 -0.7396 1.2797 7 6 4.1417 -0.5746 2.6869 8 1 4.7500 -1.4460 2.9288 9 7 4.9903 0.6191 2.7224 10 6 6.0312 0.7040 3.6375 11 6 6.2624 -0.3473 4.5258 12 6 7.2861 -0.2733 5.4232 13 6 8.1042 0.8730 5.4602 14 6 9.1620 0.9595 6.3907 15 1 9.5264 1.9261 6.7057 16 6 9.7382 -0.2066 6.9048 17 7 9.5620 -1.3493 6.2910 18 14 10.7591 -0.1335 8.4674 19 1 9.8788 -0.3463 9.6443 20 1 11.7992 -1.1926 8.4292 21 1 11.4109 1.1969 8.5710 22 6 7.8614 1.9329 4.5643 23 6 6.8379 1.8424 3.6681 24 6 3.0347 -0.4273 3.7512 25 16 1.6198 0.2226 2.7713 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 3.9567 0.0707 0.6542 34 1 3.9295 -1.6886 0.8714 35 1 4.8250 1.3501 2.1066 36 1 5.6313 -1.2234 4.4996 37 1 7.4666 -1.0895 6.1071 38 1 9.9619 -2.1580 6.6474 39 1 8.4844 2.8147 4.5874 40 1 6.6508 2.6539 2.9804 41 1 2.7886 -1.3944 4.1897 42 1 3.3313 0.2840 4.5219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277388172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:00 Heat of formation + Delta-G solvation = -1.034938 kcal Electronic energy + Delta-G solvation = -20736.404470 eV Core-core repulsion = 17805.956502 eV Total energy + Delta-G solvation = -2930.447968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09796 -38.56549 -36.81523 -35.20720 -32.97162 -31.36456 -30.15934 -29.24167 -28.03174 -26.62552 -25.29516 -23.29403 -22.32376 -21.21201 -20.75503 -19.15456 -18.23779 -17.08142 -16.98329 -16.66028 -16.26580 -15.75406 -15.64910 -15.00636 -14.76203 -14.60252 -14.17685 -14.00502 -13.65815 -13.56208 -13.45335 -13.11204 -13.04741 -12.77418 -12.74237 -12.65898 -12.49425 -12.33781 -12.20877 -11.82043 -11.63358 -11.57216 -11.49696 -11.14700 -11.06120 -10.68863 -10.31245 -9.39334 -8.59914 -8.53983 -8.16100 -6.00749 0.94694 1.10424 1.19768 1.39769 1.41670 1.51889 1.59221 2.27032 2.81399 2.84267 3.52950 3.66949 3.85862 3.97332 4.01759 4.12342 4.14630 4.33835 4.44830 4.49440 4.53372 4.66050 4.68464 4.79612 4.86136 4.93777 5.02353 5.04378 5.07896 5.13732 5.18196 5.24378 5.28796 5.43941 5.46284 5.54673 5.70391 5.80942 5.96939 6.19371 6.40091 6.67308 6.87465 7.08939 7.13967 7.30464 8.47891 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.039458 B = 0.003181 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.445453 B = 8799.920653 C = 9034.902392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.153 4.153 4 C -0.018 4.018 5 H 0.105 0.895 6 C -0.129 4.129 7 C 0.160 3.840 8 H 0.074 0.926 9 N -0.737 5.737 10 C 0.114 3.886 11 C -0.171 4.171 12 C -0.144 4.144 13 C 0.036 3.964 14 C -0.506 4.506 15 H 0.066 0.934 16 C 0.033 3.967 17 N -0.840 5.840 18 Si 0.975 3.025 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.262 1.262 22 C -0.197 4.197 23 C -0.164 4.164 24 C -0.079 4.079 25 S -0.316 6.316 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.395 0.605 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.857 -1.462 -11.927 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 C -0.211 4.211 4 C -0.146 4.146 5 H 0.124 0.876 6 C -0.168 4.168 7 C 0.052 3.948 8 H 0.092 0.908 9 N -0.372 5.372 10 C 0.015 3.985 11 C -0.193 4.193 12 C -0.164 4.164 13 C 0.033 3.967 14 C -0.538 4.538 15 H 0.084 0.916 16 C -0.179 4.179 17 N -0.468 5.468 18 Si 0.797 3.203 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.186 1.186 22 C -0.217 4.217 23 C -0.186 4.186 24 C -0.229 4.229 25 S -0.090 6.090 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.231 0.769 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.113 0.887 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.747 -1.088 -11.599 19.588 hybrid contribution 1.592 -0.528 0.682 1.810 sum -14.156 -1.616 -10.917 17.949 Atomic orbital electron populations 1.21840 0.94326 1.02284 1.01861 1.21007 0.96377 0.96440 0.95491 1.21994 1.01223 0.95716 1.02138 1.24131 0.96342 1.00711 0.93416 0.87641 1.22422 0.93640 1.05311 0.95456 1.21215 0.90786 0.89406 0.93411 0.90786 1.44144 1.32597 1.20280 1.40139 1.17402 0.92097 0.94693 0.94288 1.20248 1.01064 0.98327 0.99661 1.20866 0.95548 0.99449 1.00520 1.17808 0.93318 0.92611 0.92965 1.19591 1.16689 0.93574 1.23917 0.91625 1.26576 0.96950 0.94339 1.00062 1.69910 1.39069 1.00637 1.37201 0.85320 0.77962 0.78966 0.78097 1.19025 1.19480 1.18594 1.20741 1.01382 1.00281 0.99264 1.20082 0.98571 0.97666 1.02305 1.24802 0.94371 1.03540 1.00222 1.87936 1.41548 1.64100 1.15368 0.93700 0.91402 0.91887 0.88277 0.91811 0.92639 0.92407 0.88815 0.88528 0.76926 0.87492 0.88386 0.90774 0.88792 0.86702 0.88676 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.06 71.98 0.65 -1.38 16 2 C -0.07 -1.05 2.78 -10.79 -0.03 -1.08 16 3 C -0.15 -2.48 8.63 71.98 0.62 -1.86 16 4 C -0.02 -0.30 3.11 31.02 0.10 -0.21 16 5 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 6 C -0.13 -2.42 5.55 30.80 0.17 -2.25 16 7 C 0.16 4.12 2.66 45.20 0.12 4.24 16 8 H 0.07 2.09 6.38 -2.39 -0.02 2.07 16 9 N -0.74 -22.69 5.03 -317.57 -1.60 -24.28 16 10 C 0.11 4.66 6.58 38.67 0.25 4.91 16 11 C -0.17 -7.73 9.03 22.15 0.20 -7.53 16 12 C -0.14 -7.66 8.64 22.47 0.19 -7.46 16 13 C 0.04 1.99 5.57 -21.27 -0.12 1.87 16 14 C -0.51 -28.57 9.03 23.38 0.21 -28.36 16 15 H 0.07 3.62 7.91 -2.91 -0.02 3.59 16 16 C 0.03 1.73 5.13 85.23 0.44 2.16 16 17 N -0.84 -45.70 10.96 21.82 0.24 -45.47 16 18 Si 0.97 40.30 29.60 68.60 2.03 42.33 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 22 C -0.20 -9.82 9.74 22.48 0.22 -9.60 16 23 C -0.16 -7.09 9.82 22.15 0.22 -6.87 16 24 C -0.08 -2.10 6.89 72.41 0.50 -1.60 16 25 S -0.32 -7.56 20.10 -56.49 -1.14 -8.69 16 26 H 0.04 0.79 7.33 -2.39 -0.02 0.77 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 1.12 6.78 -2.38 -0.02 1.10 16 32 H 0.06 0.95 6.12 -2.38 -0.01 0.93 16 33 H 0.09 1.72 5.00 -2.39 -0.01 1.71 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.40 10.95 8.22 -92.71 -0.76 10.19 16 36 H 0.11 4.31 6.10 -2.91 -0.02 4.30 16 37 H 0.10 5.52 6.16 -2.91 -0.02 5.51 16 38 H 0.28 13.96 8.30 -92.70 -0.77 13.19 16 39 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.09 2.73 7.96 -2.39 -0.02 2.71 16 Total: -1.00 -60.79 338.61 3.53 -57.26 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 0.25 Total: 33.87 kcal Atomic # 6 Polarization: -58.77 SS G_CDS: 3.74 Total: -55.02 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -1.36 Total: -69.75 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.14 Total: -8.69 kcal Total: -60.79 3.53 -57.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277388172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.226 kcal (2) G-P(sol) polarization free energy of solvation -60.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds