Wall clock time and date at job start Tue Mar 31 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52989 * 109.47434 * 2 1 4 4 C 1.52999 * 109.46982 * 120.00309 * 2 1 3 5 5 H 1.08998 * 110.70411 * 56.68321 * 4 2 1 6 6 C 1.54257 * 110.79009 * 179.97438 * 4 2 1 7 7 C 1.52331 * 112.59121 * 142.98554 * 6 4 2 8 8 H 1.08994 * 108.87460 * 239.32666 * 7 6 4 9 9 N 1.46498 * 108.86820 * 120.82211 * 7 6 4 10 10 C 1.38857 * 120.00218 * 155.00572 * 9 7 6 11 11 C 1.39568 * 119.84510 * 180.02562 * 10 9 7 12 12 C 1.36333 * 120.16351 * 179.97438 * 11 10 9 13 13 C 1.40884 * 119.83511 * 0.02562 * 12 11 10 14 14 C 1.41143 * 120.15661 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99578 * 334.16068 * 14 13 12 16 16 C 1.39857 * 120.00422 * 154.16603 * 14 13 12 17 17 N 1.30901 * 120.00476 * 161.51593 * 16 14 13 18 18 Si 1.86801 * 119.99979 * 341.23734 * 16 14 13 19 19 H 1.48498 * 109.47253 * 95.24953 * 18 16 14 20 20 H 1.48504 * 109.47525 * 215.25015 * 18 16 14 21 21 H 1.48510 * 109.47077 * 335.25029 * 18 16 14 22 22 C 1.40884 * 119.69213 * 0.24342 * 13 12 11 23 23 C 1.36345 * 119.83121 * 359.47286 * 22 13 12 24 24 C 1.54264 * 112.58579 * 0.02562 * 7 6 4 25 25 S 1.83952 * 102.57976 * 335.46548 * 24 7 6 26 26 H 1.08999 * 109.47595 * 300.00270 * 1 2 3 27 27 H 1.08998 * 109.47215 * 60.00020 * 1 2 3 28 28 H 1.09003 * 109.47744 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47361 * 239.99493 * 2 1 3 30 30 H 1.09007 * 109.47110 * 59.99966 * 3 2 1 31 31 H 1.09001 * 109.47729 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47596 * 299.99921 * 3 2 1 33 33 H 1.09007 * 108.86540 * 22.17205 * 6 4 2 34 34 H 1.08996 * 108.86880 * 263.81090 * 6 4 2 35 35 H 0.97005 * 119.99725 * 334.99978 * 9 7 6 36 36 H 1.08006 * 119.91588 * 359.97047 * 11 10 9 37 37 H 1.08007 * 120.08370 * 180.02562 * 12 11 10 38 38 H 0.97003 * 120.00519 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.08342 * 179.72715 * 22 13 12 40 40 H 1.08001 * 119.91351 * 180.26679 * 23 22 13 41 41 H 1.08992 * 110.78711 * 93.74542 * 24 7 6 42 42 H 1.09008 * 110.78070 * 217.19790 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6403 -1.7342 1.2994 6 6 3.5821 -0.7397 1.2797 7 6 4.1416 -0.5746 2.6869 8 1 4.7730 0.3135 2.7133 9 7 4.9592 -1.7458 3.0120 10 6 5.9714 -1.6453 3.9573 11 6 6.7487 -2.7631 4.2641 12 6 7.7445 -2.6715 5.1908 13 6 7.9876 -1.4448 5.8395 14 6 9.0165 -1.3425 6.8004 15 1 9.3348 -2.2185 7.3459 16 6 9.6236 -0.1067 7.0461 17 7 10.2988 0.0826 8.1514 18 14 9.4774 1.2712 5.7934 19 1 8.3462 2.1590 6.1638 20 1 10.7372 2.0572 5.7727 21 1 9.2327 0.6929 4.4476 22 6 7.1953 -0.3220 5.5289 23 6 6.2067 -0.4268 4.5959 24 6 3.0346 -0.4284 3.7512 25 16 1.6201 0.2221 2.7715 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.9566 0.0707 0.6541 34 1 3.9315 -1.6875 0.8703 35 1 4.7935 -2.5917 2.5670 36 1 6.5609 -3.7030 3.7663 37 1 8.3456 -3.5373 5.4270 38 1 10.7196 0.9398 8.3220 39 1 7.3733 0.6203 6.0256 40 1 5.6013 0.4342 4.3536 41 1 2.7893 -1.3957 4.1896 42 1 3.3308 0.2830 4.5222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277388192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:11 Heat of formation + Delta-G solvation = 12.782082 kcal Electronic energy + Delta-G solvation = -20742.409908 eV Core-core repulsion = 17812.561091 eV Total energy + Delta-G solvation = -2929.848817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.80813 -37.51729 -35.76645 -33.50964 -31.86585 -29.96959 -28.99543 -28.28128 -27.41157 -25.26812 -23.80301 -22.08284 -20.97962 -20.27527 -19.64139 -17.40214 -17.02762 -16.57696 -15.67786 -15.18303 -14.94901 -14.75922 -14.46248 -14.02360 -13.54604 -13.28774 -13.03703 -12.62850 -12.56556 -12.47879 -12.40765 -12.23870 -12.01900 -11.77679 -11.65758 -11.47035 -11.19677 -10.97421 -10.91879 -10.72269 -10.66966 -10.26730 -9.95059 -9.94674 -9.48075 -9.24128 -8.77085 -7.80969 -7.70241 -6.83245 -6.70881 -4.21264 1.79844 2.26052 2.67073 2.75901 3.15855 3.27093 3.37399 4.02423 4.05235 4.28819 4.40520 4.58148 4.72761 4.83962 4.88235 5.08400 5.10958 5.24472 5.36826 5.46241 5.48633 5.52661 5.61133 5.69192 5.79134 5.80212 5.89153 5.93554 5.97174 6.05559 6.09198 6.21195 6.48011 6.64908 6.86628 7.07709 7.18414 7.40819 7.54404 7.89185 8.00196 8.24113 8.42232 8.49595 8.79318 8.93310 10.20556 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028991 B = 0.003570 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.575347 B = 7840.741851 C = 8213.896422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.155 4.155 4 C -0.028 4.028 5 H 0.092 0.908 6 C -0.133 4.133 7 C 0.162 3.838 8 H 0.083 0.917 9 N -0.753 5.753 10 C 0.081 3.919 11 C -0.139 4.139 12 C -0.173 4.173 13 C 0.062 3.938 14 C -0.450 4.450 15 H 0.086 0.914 16 C 0.082 3.918 17 N -0.819 5.819 18 Si 0.912 3.088 19 H -0.274 1.274 20 H -0.295 1.295 21 H -0.246 1.246 22 C -0.206 4.206 23 C -0.139 4.139 24 C -0.078 4.078 25 S -0.297 6.297 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.386 0.614 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.282 0.718 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.121 0.637 -15.240 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.212 4.212 4 C -0.157 4.157 5 H 0.111 0.889 6 C -0.172 4.172 7 C 0.053 3.947 8 H 0.101 0.899 9 N -0.389 5.389 10 C -0.015 4.015 11 C -0.161 4.161 12 C -0.193 4.193 13 C 0.059 3.941 14 C -0.480 4.480 15 H 0.104 0.896 16 C -0.135 4.135 17 N -0.444 5.444 18 Si 0.740 3.260 19 H -0.201 1.201 20 H -0.223 1.223 21 H -0.169 1.169 22 C -0.225 4.225 23 C -0.161 4.161 24 C -0.228 4.228 25 S -0.071 6.071 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.220 0.780 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.867 1.711 -14.732 21.719 hybrid contribution 0.876 -0.454 -0.641 1.177 sum -14.991 1.257 -15.373 21.509 Atomic orbital electron populations 1.21863 0.94615 1.01903 1.02199 1.20971 0.96196 0.96855 0.95587 1.22020 1.01396 0.95295 1.02507 1.23974 0.96998 1.00438 0.94294 0.88949 1.22411 0.93291 1.04206 0.97342 1.21172 0.91537 0.91510 0.90508 0.89883 1.44173 1.37182 1.10460 1.47053 1.17252 0.93667 0.94517 0.96089 1.19942 0.98735 0.95624 1.01812 1.20567 1.00643 0.98192 0.99900 1.17641 0.93050 0.91329 0.92097 1.19331 1.15606 0.95940 1.17084 0.89568 1.26104 0.93038 0.99395 0.94993 1.69735 1.26882 1.25594 1.22228 0.86339 0.76286 0.79909 0.83475 1.20051 1.22291 1.16895 1.20592 0.99511 0.98949 1.03481 1.19957 1.00946 0.94944 1.00257 1.24950 0.93240 1.04279 1.00354 1.87819 1.42601 1.62847 1.13787 0.91952 0.92455 0.92665 0.90257 0.90821 0.92202 0.92875 0.89468 0.90281 0.78026 0.88949 0.88177 0.90774 0.88328 0.88929 0.88915 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.06 37.15 0.34 -0.83 16 2 C -0.08 -0.63 2.78 -90.63 -0.25 -0.88 16 3 C -0.15 -1.33 8.63 37.15 0.32 -1.01 16 4 C -0.03 -0.27 3.11 -26.07 -0.08 -0.35 16 5 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 6 C -0.13 -1.35 5.55 -26.41 -0.15 -1.50 16 7 C 0.16 2.10 2.66 -67.61 -0.18 1.92 16 8 H 0.08 1.21 6.50 -51.93 -0.34 0.87 16 9 N -0.75 -11.23 5.09 -51.73 -0.26 -11.49 16 10 C 0.08 1.57 6.61 -83.69 -0.55 1.02 16 11 C -0.14 -2.82 9.82 -39.77 -0.39 -3.21 16 12 C -0.17 -3.97 9.74 -39.27 -0.38 -4.36 16 13 C 0.06 1.59 5.20 -106.79 -0.56 1.03 16 14 C -0.45 -12.38 9.57 -37.87 -0.36 -12.74 16 15 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 16 C 0.08 2.19 5.41 -17.34 -0.09 2.10 16 17 N -0.82 -22.43 13.93 55.54 0.77 -21.66 16 18 Si 0.91 21.31 24.42 -169.99 -4.15 17.16 16 19 H -0.27 -6.22 6.65 56.52 0.38 -5.85 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.25 -5.85 6.78 56.52 0.38 -5.47 16 22 C -0.21 -4.96 7.08 -39.26 -0.28 -5.23 16 23 C -0.14 -2.94 8.96 -39.77 -0.36 -3.30 16 24 C -0.08 -1.03 6.73 37.82 0.25 -0.78 16 25 S -0.30 -3.56 20.10 -107.50 -2.16 -5.72 16 26 H 0.06 0.57 7.34 -51.93 -0.38 0.19 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.73 6.78 -51.93 -0.35 0.38 16 31 H 0.06 0.52 6.12 -51.93 -0.32 0.20 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.85 5.70 -51.93 -0.30 0.55 16 34 H 0.08 0.74 7.41 -51.93 -0.39 0.36 16 35 H 0.39 5.04 8.17 -40.82 -0.33 4.71 16 36 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 38 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 39 H 0.10 2.41 4.25 -52.49 -0.22 2.19 16 40 H 0.09 1.76 5.77 -52.49 -0.30 1.46 16 41 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 42 H 0.10 1.46 7.78 -51.92 -0.40 1.06 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -27.54 332.08 -9.83 -37.37 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.31 Total: 7.43 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -2.72 Total: -28.10 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.51 Total: -33.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.15 Total: 17.16 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.16 Total: -5.72 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.54 -9.83 -37.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277388192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.155 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds