Wall clock time and date at job start Tue Mar 31 2020 07:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48506 * 109.47091 * 269.99993 * 3 2 1 5 5 H 1.48505 * 109.47142 * 29.99937 * 3 2 1 6 6 H 1.48504 * 109.47335 * 149.99813 * 3 2 1 7 7 C 1.37875 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00036 * 0.27578 * 7 2 1 9 9 C 1.50694 * 120.00104 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47223 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47381 * 179.97438 * 11 10 9 13 13 C 1.46895 * 111.00324 * 183.62421 * 12 11 10 14 14 C 1.53001 * 109.43761 * 54.95873 * 13 12 11 15 15 O 1.42896 * 109.47669 * 174.48461 * 14 13 12 16 16 C 1.53075 * 109.43432 * 295.09237 * 13 12 11 17 17 C 1.53409 * 108.30176 * 288.07533 * 16 13 12 18 18 O 1.42827 * 108.36849 * 295.26107 * 17 16 13 19 19 C 1.35840 * 117.84460 * 49.21517 * 18 17 16 20 20 C 1.39149 * 118.49005 * 162.91585 * 19 18 17 21 21 C 1.37969 * 120.21373 * 179.76673 * 20 19 18 22 22 C 1.38293 * 119.95553 * 0.02562 * 21 20 19 23 23 C 1.38100 * 119.98518 * 0.06723 * 22 21 20 24 24 C 1.38373 * 121.81208 * 342.82454 * 19 18 17 25 25 H 0.97006 * 119.99963 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47015 * 299.99881 * 9 7 2 27 27 H 1.08999 * 109.47385 * 60.00010 * 9 7 2 28 28 H 1.08997 * 109.47107 * 299.99991 * 10 9 7 29 29 H 1.08999 * 109.46858 * 59.99737 * 10 9 7 30 30 H 1.08997 * 109.47490 * 300.00269 * 11 10 9 31 31 H 1.09007 * 109.46899 * 59.99981 * 11 10 9 32 32 H 1.00900 * 110.99619 * 59.67029 * 12 11 10 33 33 H 1.09001 * 109.47069 * 294.48845 * 14 13 12 34 34 H 1.09001 * 109.46782 * 54.48488 * 14 13 12 35 35 H 0.96692 * 114.00304 * 180.02562 * 15 14 13 36 36 H 1.08994 * 109.69768 * 47.78938 * 16 13 12 37 37 H 1.09001 * 109.69437 * 168.38454 * 16 13 12 38 38 H 1.08999 * 109.68234 * 175.54011 * 17 16 13 39 39 H 1.09000 * 109.71279 * 55.00092 * 17 16 13 40 40 H 1.07993 * 119.89539 * 359.75536 * 20 19 18 41 41 H 1.07999 * 120.02181 * 180.02562 * 21 20 19 42 42 H 1.08005 * 120.00620 * 180.08813 * 22 21 20 43 43 H 1.08007 * 119.83836 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 -0.0035 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6365 0.0023 11 6 5.5514 -2.6366 0.0022 12 7 6.0412 -4.0215 0.0040 13 6 7.5070 -4.0616 0.0907 14 6 7.9663 -3.2709 1.3174 15 8 9.3791 -3.4154 1.4758 16 6 8.1090 -3.4377 -1.1709 17 6 7.8854 -4.4050 -2.3405 18 8 8.6243 -5.6000 -2.0839 19 6 8.4881 -6.1804 -0.8633 20 6 8.8932 -7.5026 -0.7082 21 6 8.7754 -8.1256 0.5171 22 6 8.2527 -7.4353 1.5954 23 6 7.8479 -6.1236 1.4446 24 6 7.9632 -5.4931 0.2168 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6804 -0.8889 27 1 3.8745 -0.6801 0.8911 28 1 3.6578 -3.1498 0.8924 29 1 3.6584 -3.1509 -0.8875 30 1 5.9148 -2.1235 -0.8881 31 1 5.9148 -2.1220 0.8918 32 1 5.7132 -4.5220 -0.8085 33 1 7.7216 -2.2172 1.1830 34 1 7.4604 -3.6510 2.2049 35 1 9.7403 -2.9397 2.2362 36 1 7.6184 -2.4874 -1.3809 37 1 9.1774 -3.2763 -1.0270 38 1 8.2352 -3.9485 -3.2664 39 1 6.8244 -4.6403 -2.4252 40 1 9.3010 -8.0429 -1.5497 41 1 9.0912 -9.1518 0.6342 42 1 8.1614 -7.9217 2.5554 43 1 7.4396 -5.5868 2.2882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281650749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:06 Heat of formation + Delta-G solvation = -87.143840 kcal Electronic energy + Delta-G solvation = -23692.308859 eV Core-core repulsion = 20315.374058 eV Total energy + Delta-G solvation = -3376.934801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.09291 -38.97819 -38.43203 -37.11637 -35.73879 -34.10151 -32.02459 -31.65003 -30.90794 -28.69345 -27.89799 -25.07353 -24.88650 -23.47428 -22.60614 -21.84550 -20.05970 -19.01696 -18.81873 -18.51415 -17.52905 -17.23948 -16.77640 -16.35802 -15.91949 -15.68167 -15.51351 -15.47720 -14.85462 -14.75866 -14.68297 -14.53509 -14.17157 -13.72061 -13.58132 -13.41783 -13.16678 -12.83336 -12.72528 -12.45186 -12.26453 -12.11897 -11.87651 -11.80030 -11.55857 -11.49414 -11.28370 -11.16357 -10.85037 -10.75855 -9.74690 -9.48964 -9.08942 -8.28802 -6.33316 0.42006 0.53072 1.36254 1.38540 1.50388 2.33095 2.36742 2.73226 2.97160 3.06659 3.33632 3.55548 3.72370 3.83274 3.90909 4.06575 4.18206 4.23712 4.27200 4.34704 4.40609 4.47689 4.49365 4.58844 4.63186 4.68080 4.75807 4.79336 4.92532 4.98353 5.03427 5.11328 5.12490 5.38472 5.51820 5.58558 5.60740 5.66403 5.67155 5.90420 5.98258 6.25174 6.31280 6.47991 6.75584 6.86168 7.31324 8.88347 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.003471 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.619485 B = 8065.890951 C = 8124.905341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.534 4.534 8 H 0.027 0.973 9 C -0.009 4.009 10 C -0.089 4.089 11 C 0.062 3.938 12 N -0.673 5.673 13 C 0.161 3.839 14 C 0.092 3.908 15 O -0.578 6.578 16 C -0.185 4.185 17 C 0.058 3.942 18 O -0.329 6.329 19 C 0.111 3.889 20 C -0.168 4.168 21 C -0.085 4.085 22 C -0.162 4.162 23 C -0.068 4.068 24 C -0.141 4.141 25 H 0.266 0.734 26 H 0.020 0.980 27 H 0.022 0.978 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.344 0.656 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.397 0.603 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.062 0.938 40 H 0.137 0.863 41 H 0.154 0.846 42 H 0.143 0.857 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.688 -10.971 1.031 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.127 4.127 11 C -0.067 4.067 12 N -0.306 5.306 13 C 0.070 3.930 14 C 0.014 3.986 15 O -0.385 6.385 16 C -0.225 4.225 17 C -0.017 4.017 18 O -0.244 6.244 19 C 0.066 3.934 20 C -0.187 4.187 21 C -0.103 4.103 22 C -0.180 4.180 23 C -0.086 4.086 24 C -0.142 4.142 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.164 0.836 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.247 0.753 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.147 0.853 39 H 0.080 0.920 40 H 0.155 0.845 41 H 0.172 0.828 42 H 0.161 0.839 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 23.494 -11.363 1.026 26.117 hybrid contribution -0.415 1.546 -0.381 1.645 sum 23.078 -9.817 0.644 25.088 Atomic orbital electron populations 1.70087 1.08470 1.28169 1.52798 1.26092 0.95646 1.03770 0.94121 0.85597 0.79577 0.77860 0.79212 1.19145 1.21181 1.16537 1.21527 0.92421 0.92953 1.50266 0.95417 1.19479 0.93617 0.94940 0.96627 1.21241 0.93783 0.96925 1.00780 1.22088 0.94699 0.88733 1.01135 1.60607 1.07088 1.15084 1.47842 1.19571 0.87258 0.91474 0.94686 1.22041 0.81927 0.98149 0.96469 1.86426 1.21132 1.76758 1.54204 1.22918 1.03477 1.00273 0.95802 1.23120 0.96032 0.83046 0.99501 1.85949 1.66205 1.41394 1.30809 1.19031 0.97541 0.92578 0.84259 1.20823 1.06030 0.91943 0.99877 1.21248 0.97020 1.00730 0.91307 1.21335 1.01736 0.94650 1.00263 1.21018 0.96486 0.95037 0.96104 1.19496 1.05236 0.95357 0.94106 0.92546 0.96163 0.95946 0.93270 0.93673 0.94015 0.90286 0.83620 0.92522 0.92306 0.75325 0.88799 0.89963 0.85330 0.91979 0.84481 0.82796 0.83871 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 2 C 0.00 0.00 5.47 84.65 0.46 0.46 16 3 Si 0.95 43.64 27.47 68.60 1.88 45.53 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 7 C -0.53 -30.86 9.66 25.60 0.25 -30.62 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.09 -3.35 5.44 30.59 0.17 -3.19 16 11 C 0.06 1.74 4.92 86.30 0.42 2.17 16 12 N -0.67 -17.47 6.05 -473.66 -2.86 -20.33 16 13 C 0.16 3.77 0.41 2.83 0.00 3.78 16 14 C 0.09 1.95 4.77 71.98 0.34 2.29 16 15 O -0.58 -11.38 12.43 -148.98 -1.85 -13.24 16 16 C -0.19 -4.02 4.93 30.76 0.15 -3.87 16 17 C 0.06 1.20 6.97 72.12 0.50 1.71 16 18 O -0.33 -8.34 10.27 -91.75 -0.94 -9.28 16 19 C 0.11 2.85 6.47 22.52 0.15 3.00 16 20 C -0.17 -3.72 9.94 22.42 0.22 -3.49 16 21 C -0.09 -1.58 10.04 22.22 0.22 -1.35 16 22 C -0.16 -3.17 10.04 22.25 0.22 -2.94 16 23 C -0.07 -1.57 9.00 22.30 0.20 -1.37 16 24 C -0.14 -3.52 4.51 -19.75 -0.09 -3.61 16 25 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 26 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 27 H 0.02 0.98 7.20 -2.39 -0.02 0.97 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.10 6.38 -2.39 -0.02 1.08 16 31 H 0.08 2.13 6.13 -2.38 -0.01 2.12 16 32 H 0.34 8.97 7.26 -89.69 -0.65 8.32 16 33 H 0.06 1.14 6.59 -2.39 -0.02 1.12 16 34 H 0.06 1.24 6.79 -2.39 -0.02 1.22 16 35 H 0.40 4.21 9.12 -74.06 -0.68 3.53 16 36 H 0.09 1.90 6.12 -2.39 -0.01 1.89 16 37 H 0.08 1.92 7.58 -2.39 -0.02 1.90 16 38 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 1.29 6.72 -2.39 -0.02 1.27 16 40 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.12 2.74 6.59 -2.91 -0.02 2.72 16 Total: -1.00 -70.97 336.49 -0.48 -71.44 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.35 Total: 23.22 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 3.35 Total: -37.31 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -2.56 Total: -80.36 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -2.79 Total: -22.51 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.53 kcal Total: -70.97 -0.48 -71.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281650749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.701 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds