Wall clock time and date at job start Tue Mar 31 2020 07:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48498 * 109.47610 * 89.99306 * 3 2 1 5 5 H 1.48511 * 109.47394 * 209.99721 * 3 2 1 6 6 H 1.48501 * 109.46860 * 329.99033 * 3 2 1 7 7 C 1.37885 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99752 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00055 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46670 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46666 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46977 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99786 * 175.16608 * 12 11 10 14 14 C 1.52997 * 109.43757 * 304.72299 * 13 12 11 15 15 O 1.42903 * 109.46912 * 185.53604 * 14 13 12 16 16 C 1.53069 * 109.43334 * 64.59249 * 13 12 11 17 17 C 1.53418 * 108.30332 * 71.86878 * 16 13 12 18 18 O 1.42823 * 108.37198 * 64.70668 * 17 16 13 19 19 C 1.35845 * 117.86130 * 310.79935 * 18 17 16 20 20 C 1.39141 * 118.49795 * 196.97200 * 19 18 17 21 21 C 1.37973 * 120.21754 * 180.43931 * 20 19 18 22 22 C 1.38287 * 119.95428 * 359.96502 * 21 20 19 23 23 C 1.38108 * 119.98458 * 359.93019 * 22 21 20 24 24 C 1.38375 * 121.80523 * 17.26156 * 19 18 17 25 25 H 0.97005 * 119.99953 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46788 * 299.99663 * 9 7 2 27 27 H 1.08994 * 109.47032 * 59.99907 * 9 7 2 28 28 H 1.08999 * 109.47255 * 299.99396 * 10 9 7 29 29 H 1.09003 * 109.46940 * 60.00366 * 10 9 7 30 30 H 1.08996 * 109.47333 * 300.00201 * 11 10 9 31 31 H 1.09003 * 109.46964 * 60.00053 * 11 10 9 32 32 H 1.00900 * 111.00217 * 299.12534 * 12 11 10 33 33 H 1.09003 * 109.46721 * 305.53345 * 14 13 12 34 34 H 1.09000 * 109.47251 * 65.53494 * 14 13 12 35 35 H 0.96696 * 113.99988 * 180.02562 * 15 14 13 36 36 H 1.08999 * 109.69676 * 191.57313 * 16 13 12 37 37 H 1.09000 * 109.69711 * 312.17122 * 16 13 12 38 38 H 1.09004 * 109.67920 * 304.99041 * 17 16 13 39 39 H 1.08999 * 109.68647 * 184.43040 * 17 16 13 40 40 H 1.08004 * 119.89508 * 0.39862 * 20 19 18 41 41 H 1.07997 * 120.02138 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.01061 * 179.91373 * 22 21 20 43 43 H 1.07997 * 119.84029 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 1.4000 5 1 3.5468 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7003 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5515 -2.6365 0.0022 12 7 6.0412 -4.0215 0.0040 13 6 7.5051 -4.0624 -0.1116 14 6 7.9392 -3.2903 -1.3591 15 8 9.3486 -3.4373 -1.5439 16 6 8.1320 -3.4195 1.1280 17 6 7.9313 -4.3685 2.3167 18 8 8.6641 -5.5680 2.0638 19 6 8.5036 -6.1673 0.8553 20 6 8.9069 -7.4912 0.7119 21 6 8.7685 -8.1317 -0.5023 22 6 8.2268 -7.4570 -1.5810 23 6 7.8234 -6.1435 -1.4418 24 6 7.9595 -5.4956 -0.2252 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6805 -0.8889 27 1 3.8745 -0.6800 0.8911 28 1 3.6579 -3.1498 0.8925 29 1 3.6585 -3.1510 -0.8876 30 1 5.9149 -2.1234 -0.8881 31 1 5.9149 -2.1220 0.8918 32 1 5.7295 -4.5143 0.8275 33 1 7.4155 -3.6838 -2.2304 34 1 7.6970 -2.2347 -1.2356 35 1 9.6943 -2.9724 -2.3181 36 1 9.1973 -3.2607 0.9606 37 1 7.6455 -2.4659 1.3331 38 1 6.8720 -4.6015 2.4255 39 1 8.2999 -3.8983 3.2283 40 1 9.3302 -8.0191 1.5537 41 1 9.0830 -9.1592 -0.6101 42 1 8.1193 -7.9570 -2.5322 43 1 7.4002 -5.6190 -2.2856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281650753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:15 Heat of formation + Delta-G solvation = -63.218665 kcal Electronic energy + Delta-G solvation = -23691.423212 eV Core-core repulsion = 20315.525884 eV Total energy + Delta-G solvation = -3375.897328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19511 -38.02591 -37.57473 -36.09465 -34.13040 -32.33876 -30.80741 -30.69521 -29.88219 -27.63655 -26.40906 -24.20916 -23.64595 -22.21157 -21.63312 -20.20279 -19.12087 -18.01822 -17.73251 -16.74673 -16.62378 -16.31226 -15.73659 -15.01073 -14.65530 -14.60256 -14.49335 -14.19771 -13.82375 -13.73455 -13.61620 -13.21999 -12.69611 -12.57533 -12.31879 -12.21422 -11.96339 -11.63798 -11.48926 -11.20364 -11.04047 -10.98452 -10.82258 -10.33714 -10.07928 -9.96062 -9.78073 -9.64950 -9.21252 -8.86158 -8.56326 -8.45147 -8.18296 -6.06231 -4.04278 1.28399 1.41275 3.17994 3.27374 3.35103 3.37632 3.65045 3.82269 4.24705 4.42369 4.44653 4.59843 4.74745 4.75243 4.97742 5.00204 5.15250 5.16630 5.27087 5.27758 5.31852 5.42649 5.48485 5.50456 5.57953 5.64364 5.82179 5.85627 5.96120 6.09244 6.23108 6.43206 6.46766 6.49126 6.53885 6.72409 6.85120 7.04969 7.29063 7.31056 7.37033 7.41076 7.47715 7.77401 8.52580 8.99419 9.56062 11.07344 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.003471 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.513021 B = 8065.141627 C = 8125.608653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.266 1.266 6 H -0.288 1.288 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.098 4.098 11 C 0.047 3.953 12 N -0.671 5.671 13 C 0.162 3.838 14 C 0.089 3.911 15 O -0.567 6.567 16 C -0.192 4.192 17 C 0.062 3.938 18 O -0.317 6.317 19 C 0.135 3.865 20 C -0.157 4.157 21 C -0.087 4.087 22 C -0.159 4.159 23 C -0.053 4.053 24 C -0.127 4.127 25 H 0.263 0.737 26 H 0.015 0.985 27 H 0.008 0.992 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.344 0.656 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.379 0.621 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.202 -11.395 -0.866 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.214 1.214 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.136 4.136 11 C -0.081 4.081 12 N -0.304 5.304 13 C 0.071 3.929 14 C 0.011 3.989 15 O -0.371 6.371 16 C -0.231 4.231 17 C -0.013 4.013 18 O -0.231 6.231 19 C 0.089 3.911 20 C -0.175 4.175 21 C -0.105 4.105 22 C -0.177 4.177 23 C -0.072 4.072 24 C -0.129 4.129 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.164 0.836 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.225 0.775 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 20.980 -11.768 -0.840 24.070 hybrid contribution 0.402 1.817 0.322 1.889 sum 21.383 -9.951 -0.518 23.590 Atomic orbital electron populations 1.69916 1.06302 1.26860 1.51186 1.25046 0.94732 0.99159 0.94635 0.86772 0.80312 0.83687 0.78426 1.20370 1.19108 1.21380 1.21142 0.89476 0.94477 1.50670 0.91001 1.19538 0.97239 0.92171 0.96040 1.21432 0.90663 0.99689 1.01787 1.22350 0.98018 0.87538 1.00163 1.60684 1.06542 1.16518 1.46650 1.19528 0.88344 0.91169 0.93820 1.22129 0.81621 0.98369 0.96797 1.86466 1.22144 1.76994 1.51509 1.22993 1.04027 1.00122 0.95973 1.22957 0.96192 0.83495 0.98646 1.85970 1.65299 1.39997 1.31841 1.18730 0.96456 0.91635 0.84258 1.20508 1.06025 0.92060 0.98938 1.20877 0.98038 0.99470 0.92159 1.21002 1.02531 0.95132 0.99082 1.20846 0.95969 0.94070 0.96282 1.19386 1.04561 0.95048 0.93857 0.92741 0.96692 0.97325 0.92944 0.91814 0.91080 0.95227 0.83559 0.92166 0.92870 0.77451 0.89213 0.89344 0.91893 0.87370 0.85581 0.85731 0.86097 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 10 C -0.10 -1.86 5.45 -26.73 -0.15 -2.01 16 11 C 0.05 0.71 4.92 -3.82 -0.02 0.69 16 12 N -0.67 -9.08 6.04 -101.06 -0.61 -9.69 16 13 C 0.16 2.01 0.41 -132.68 -0.05 1.96 16 14 C 0.09 1.01 4.79 37.16 0.18 1.19 16 15 O -0.57 -6.06 12.42 -35.23 -0.44 -6.50 16 16 C -0.19 -2.23 4.92 -26.48 -0.13 -2.36 16 17 C 0.06 0.69 6.97 37.37 0.26 0.95 16 18 O -0.32 -4.14 10.27 -19.25 -0.20 -4.34 16 19 C 0.13 1.78 6.47 -39.20 -0.25 1.53 16 20 C -0.16 -1.83 9.94 -39.34 -0.39 -2.23 16 21 C -0.09 -0.90 10.04 -39.66 -0.40 -1.30 16 22 C -0.16 -1.71 10.04 -39.61 -0.40 -2.11 16 23 C -0.05 -0.65 9.00 -39.53 -0.36 -1.00 16 24 C -0.13 -1.65 4.51 -104.44 -0.47 -2.13 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 27 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.05 6.07 -51.93 -0.32 0.73 16 31 H 0.03 0.43 6.42 -51.93 -0.33 0.10 16 32 H 0.34 4.62 7.27 -39.29 -0.29 4.33 16 33 H 0.06 0.68 6.79 -51.93 -0.35 0.33 16 34 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 35 H 0.38 2.37 9.12 45.56 0.42 2.79 16 36 H 0.09 1.11 7.59 -51.93 -0.39 0.72 16 37 H 0.09 0.99 6.13 -51.93 -0.32 0.68 16 38 H 0.06 0.68 6.72 -51.93 -0.35 0.33 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.42 6.59 -52.49 -0.35 1.07 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -32.51 336.48 -8.30 -40.81 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.51 Total: 5.37 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -2.72 Total: -20.48 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.16 Total: -36.80 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.64 Total: -10.84 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.51 -8.30 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281650753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.408 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds