Wall clock time and date at job start Tue Mar 31 2020 07:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48498 * 109.47610 * 89.99306 * 3 2 1 5 5 H 1.48511 * 109.47394 * 209.99721 * 3 2 1 6 6 H 1.48501 * 109.46860 * 329.99033 * 3 2 1 7 7 C 1.37885 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99752 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00055 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46670 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46666 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46977 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99786 * 175.16608 * 12 11 10 14 14 C 1.52997 * 109.43757 * 304.72299 * 13 12 11 15 15 O 1.42903 * 109.46912 * 185.53604 * 14 13 12 16 16 C 1.53069 * 109.43334 * 64.59249 * 13 12 11 17 17 C 1.53418 * 108.30332 * 71.86878 * 16 13 12 18 18 O 1.42823 * 108.37198 * 64.70668 * 17 16 13 19 19 C 1.35845 * 117.86130 * 310.79935 * 18 17 16 20 20 C 1.39141 * 118.49795 * 196.97200 * 19 18 17 21 21 C 1.37973 * 120.21754 * 180.43931 * 20 19 18 22 22 C 1.38287 * 119.95428 * 359.96502 * 21 20 19 23 23 C 1.38108 * 119.98458 * 359.93019 * 22 21 20 24 24 C 1.38375 * 121.80523 * 17.26156 * 19 18 17 25 25 H 0.97005 * 119.99953 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46788 * 299.99663 * 9 7 2 27 27 H 1.08994 * 109.47032 * 59.99907 * 9 7 2 28 28 H 1.08999 * 109.47255 * 299.99396 * 10 9 7 29 29 H 1.09003 * 109.46940 * 60.00366 * 10 9 7 30 30 H 1.08996 * 109.47333 * 300.00201 * 11 10 9 31 31 H 1.09003 * 109.46964 * 60.00053 * 11 10 9 32 32 H 1.00900 * 111.00217 * 299.12534 * 12 11 10 33 33 H 1.09003 * 109.46721 * 305.53345 * 14 13 12 34 34 H 1.09000 * 109.47251 * 65.53494 * 14 13 12 35 35 H 0.96696 * 113.99988 * 180.02562 * 15 14 13 36 36 H 1.08999 * 109.69676 * 191.57313 * 16 13 12 37 37 H 1.09000 * 109.69711 * 312.17122 * 16 13 12 38 38 H 1.09004 * 109.67920 * 304.99041 * 17 16 13 39 39 H 1.08999 * 109.68647 * 184.43040 * 17 16 13 40 40 H 1.08004 * 119.89508 * 0.39862 * 20 19 18 41 41 H 1.07997 * 120.02138 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.01061 * 179.91373 * 22 21 20 43 43 H 1.07997 * 119.84029 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 1.4000 5 1 3.5468 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7003 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5515 -2.6365 0.0022 12 7 6.0412 -4.0215 0.0040 13 6 7.5051 -4.0624 -0.1116 14 6 7.9392 -3.2903 -1.3591 15 8 9.3486 -3.4373 -1.5439 16 6 8.1320 -3.4195 1.1280 17 6 7.9313 -4.3685 2.3167 18 8 8.6641 -5.5680 2.0638 19 6 8.5036 -6.1673 0.8553 20 6 8.9069 -7.4912 0.7119 21 6 8.7685 -8.1317 -0.5023 22 6 8.2268 -7.4570 -1.5810 23 6 7.8234 -6.1435 -1.4418 24 6 7.9595 -5.4956 -0.2252 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6805 -0.8889 27 1 3.8745 -0.6800 0.8911 28 1 3.6579 -3.1498 0.8925 29 1 3.6585 -3.1510 -0.8876 30 1 5.9149 -2.1234 -0.8881 31 1 5.9149 -2.1220 0.8918 32 1 5.7295 -4.5143 0.8275 33 1 7.4155 -3.6838 -2.2304 34 1 7.6970 -2.2347 -1.2356 35 1 9.6943 -2.9724 -2.3181 36 1 9.1973 -3.2607 0.9606 37 1 7.6455 -2.4659 1.3331 38 1 6.8720 -4.6015 2.4255 39 1 8.2999 -3.8983 3.2283 40 1 9.3302 -8.0191 1.5537 41 1 9.0830 -9.1592 -0.6101 42 1 8.1193 -7.9570 -2.5322 43 1 7.4002 -5.6190 -2.2856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281650753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:15 Heat of formation + Delta-G solvation = -87.047950 kcal Electronic energy + Delta-G solvation = -23692.456527 eV Core-core repulsion = 20315.525884 eV Total energy + Delta-G solvation = -3376.930643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.09288 -38.97669 -38.43251 -37.11417 -35.73782 -34.10051 -32.02453 -31.65063 -30.90722 -28.69288 -27.90097 -25.07345 -24.88597 -23.47326 -22.60596 -21.84077 -20.05989 -19.01821 -18.81810 -18.51851 -17.52899 -17.23284 -16.78347 -16.35782 -15.91734 -15.67922 -15.51393 -15.47550 -14.85392 -14.75909 -14.68422 -14.53688 -14.17183 -13.72185 -13.57738 -13.41668 -13.16626 -12.83485 -12.72460 -12.45256 -12.26370 -12.11935 -11.87645 -11.79995 -11.55688 -11.49396 -11.28346 -11.16355 -10.84715 -10.75861 -9.74766 -9.48944 -9.08945 -8.28783 -6.33266 0.41960 0.53061 1.36272 1.38555 1.50372 2.33051 2.36743 2.73122 2.97074 3.06676 3.33629 3.55559 3.72341 3.83244 3.90843 4.06432 4.18235 4.23829 4.27404 4.34900 4.40733 4.47700 4.49390 4.58881 4.63122 4.68255 4.75904 4.79491 4.92482 4.98225 5.03329 5.11444 5.12446 5.38455 5.51973 5.58563 5.60851 5.66372 5.67159 5.90398 5.98284 6.25290 6.31350 6.47977 6.75609 6.86093 7.31335 8.88366 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.003471 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.513021 B = 8065.141627 C = 8125.608653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.242 1.242 6 H -0.286 1.286 7 C -0.534 4.534 8 H 0.027 0.973 9 C -0.009 4.009 10 C -0.089 4.089 11 C 0.062 3.938 12 N -0.674 5.674 13 C 0.161 3.839 14 C 0.092 3.908 15 O -0.578 6.578 16 C -0.185 4.185 17 C 0.058 3.942 18 O -0.329 6.329 19 C 0.111 3.889 20 C -0.168 4.168 21 C -0.085 4.085 22 C -0.162 4.162 23 C -0.068 4.068 24 C -0.141 4.141 25 H 0.266 0.734 26 H 0.022 0.978 27 H 0.020 0.980 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.344 0.656 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.397 0.603 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.154 0.846 42 H 0.143 0.857 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.681 -10.986 -1.075 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.165 1.165 6 H -0.212 1.212 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.127 4.127 11 C -0.067 4.067 12 N -0.306 5.306 13 C 0.070 3.930 14 C 0.014 3.986 15 O -0.385 6.385 16 C -0.225 4.225 17 C -0.017 4.017 18 O -0.244 6.244 19 C 0.066 3.934 20 C -0.187 4.187 21 C -0.103 4.103 22 C -0.180 4.180 23 C -0.086 4.086 24 C -0.142 4.142 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.164 0.836 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.247 0.753 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.172 0.828 42 H 0.161 0.839 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 23.487 -11.374 -1.062 26.118 hybrid contribution -0.410 1.546 0.362 1.640 sum 23.077 -9.828 -0.700 25.092 Atomic orbital electron populations 1.70085 1.08473 1.28169 1.52793 1.26094 0.95644 1.03768 0.94120 0.85596 0.79577 0.77861 0.79214 1.19142 1.16539 1.21181 1.21533 0.92420 0.92948 1.50273 0.95422 1.19480 0.93616 0.94948 0.96624 1.21239 0.93789 0.96899 1.00773 1.22088 0.94712 0.88707 1.01152 1.60596 1.07759 1.15490 1.46791 1.19569 0.87224 0.91445 0.94744 1.22043 0.82059 0.98242 0.96249 1.86429 1.21687 1.77555 1.52844 1.22920 1.03418 1.00310 0.95821 1.23124 0.96234 0.83013 0.99324 1.85948 1.65770 1.40670 1.31969 1.19029 0.97452 0.92456 0.84465 1.20823 1.05990 0.91833 1.00023 1.21247 0.96971 1.00720 0.91363 1.21335 1.01669 0.94724 1.00257 1.21019 0.96529 0.94918 0.96180 1.19497 1.05127 0.95377 0.94202 0.92544 0.95949 0.96162 0.93674 0.93293 0.90268 0.94023 0.83613 0.92317 0.92517 0.75327 0.89968 0.88797 0.91979 0.85317 0.84475 0.82794 0.83876 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 2 C 0.00 0.00 5.47 84.66 0.46 0.46 16 3 Si 0.95 43.65 27.47 68.60 1.88 45.53 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 6 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.53 -30.88 9.66 25.60 0.25 -30.63 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.09 -3.34 5.45 30.59 0.17 -3.18 16 11 C 0.06 1.74 4.92 86.30 0.42 2.17 16 12 N -0.67 -17.47 6.04 -473.66 -2.86 -20.33 16 13 C 0.16 3.78 0.41 2.82 0.00 3.78 16 14 C 0.09 1.95 4.79 71.98 0.34 2.29 16 15 O -0.58 -11.39 12.42 -148.98 -1.85 -13.24 16 16 C -0.19 -4.01 4.92 30.76 0.15 -3.86 16 17 C 0.06 1.20 6.97 72.12 0.50 1.70 16 18 O -0.33 -8.32 10.27 -91.81 -0.94 -9.27 16 19 C 0.11 2.85 6.47 22.52 0.15 3.00 16 20 C -0.17 -3.71 9.94 22.42 0.22 -3.49 16 21 C -0.09 -1.57 10.04 22.22 0.22 -1.35 16 22 C -0.16 -3.17 10.04 22.25 0.22 -2.95 16 23 C -0.07 -1.58 9.00 22.30 0.20 -1.38 16 24 C -0.14 -3.52 4.51 -19.75 -0.09 -3.61 16 25 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 26 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 27 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.08 2.14 6.07 -2.39 -0.01 2.12 16 31 H 0.04 1.09 6.42 -2.39 -0.02 1.08 16 32 H 0.34 8.96 7.27 -89.69 -0.65 8.31 16 33 H 0.06 1.24 6.79 -2.39 -0.02 1.22 16 34 H 0.06 1.14 6.56 -2.39 -0.02 1.13 16 35 H 0.40 4.22 9.12 -74.06 -0.68 3.54 16 36 H 0.08 1.92 7.59 -2.39 -0.02 1.90 16 37 H 0.09 1.90 6.13 -2.39 -0.01 1.88 16 38 H 0.06 1.29 6.72 -2.38 -0.02 1.27 16 39 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.12 2.75 6.59 -2.91 -0.02 2.73 16 Total: -1.00 -70.99 336.48 -0.47 -71.46 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.35 Total: 23.20 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 3.35 Total: -37.31 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -2.56 Total: -80.37 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -2.79 Total: -22.51 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Total: -70.99 -0.47 -71.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281650753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.589 kcal (2) G-P(sol) polarization free energy of solvation -70.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds