Wall clock time and date at job start Tue Mar 31 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50694 * 120.00461 * 2 1 4 4 C 1.50703 * 119.99677 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47472 * 94.99980 * 4 2 1 6 6 N 1.46499 * 109.47207 * 179.97438 * 5 4 2 7 7 C 1.40009 * 120.00183 * 179.97438 * 6 5 4 8 8 C 1.38645 * 120.09567 * 359.97438 * 7 6 5 9 9 C 1.38283 * 120.00346 * 179.97438 * 8 7 6 10 10 C 1.38270 * 120.20436 * 0.05011 * 9 8 7 11 11 C 1.38242 * 120.19694 * 359.97438 * 10 9 8 12 12 C 1.38729 * 119.99416 * 359.67540 * 11 10 9 13 13 S 1.76196 * 120.10405 * 180.32425 * 12 11 10 14 14 C 1.81398 * 103.00079 * 354.36010 * 13 12 11 15 15 H 1.09002 * 109.47130 * 49.52110 * 14 13 12 16 16 C 1.53005 * 109.46894 * 289.52331 * 14 13 12 17 17 C 1.50703 * 109.47326 * 169.52547 * 14 13 12 18 18 H 1.07995 * 119.99674 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99944 * 180.02562 * 17 14 13 20 20 N 1.31513 * 120.00079 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99752 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47467 * 59.99985 * 21 19 17 23 23 H 1.48501 * 109.46996 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47091 * 299.99367 * 21 19 17 25 25 H 1.07995 * 120.00573 * 180.02562 * 1 2 3 26 26 H 1.08010 * 119.99883 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.47141 * 270.00079 * 3 2 1 28 28 H 1.08998 * 109.47132 * 29.99601 * 3 2 1 29 29 H 1.09003 * 109.47717 * 150.00109 * 3 2 1 30 30 H 1.08994 * 109.47179 * 334.99632 * 4 2 1 31 31 H 1.09003 * 109.47073 * 214.99776 * 4 2 1 32 32 H 1.09003 * 109.46806 * 299.99960 * 5 4 2 33 33 H 1.09001 * 109.47200 * 60.00068 * 5 4 2 34 34 H 0.96998 * 120.00317 * 0.02562 * 6 5 4 35 35 H 1.08005 * 119.99607 * 359.97438 * 8 7 6 36 36 H 1.08003 * 119.89969 * 180.02562 * 9 8 7 37 37 H 1.07998 * 119.89938 * 179.97438 * 10 9 8 38 38 H 1.08003 * 120.00384 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.46549 * 173.72783 * 16 14 13 40 40 H 1.08993 * 109.46981 * 293.72952 * 16 14 13 41 41 H 1.08997 * 109.47050 * 53.73506 * 16 14 13 42 42 H 0.96997 * 120.00186 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 7 3.1602 -2.9519 -1.4381 7 6 3.6014 -3.5051 -2.6463 8 6 3.3453 -2.8544 -3.8435 9 6 3.7824 -3.4022 -5.0355 10 6 4.4744 -4.5993 -5.0386 11 6 4.7339 -5.2555 -3.8498 12 6 4.3056 -4.7096 -2.6485 13 16 4.6422 -5.5392 -1.1310 14 6 5.3930 -7.0980 -1.6759 15 1 6.1835 -6.8882 -2.3964 16 6 4.3254 -7.9764 -2.3314 17 6 5.9751 -7.8179 -0.4867 18 1 5.9012 -7.3811 0.4982 19 6 6.6029 -9.0337 -0.6564 20 7 6.6933 -9.5653 -1.8559 21 14 7.3238 -9.9263 0.8176 22 1 6.2463 -10.2128 1.7985 23 1 7.9385 -11.2024 0.3715 24 1 8.3594 -9.0737 1.4547 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 2.2452 1.6197 -1.0277 28 1 1.4745 2.0647 0.5138 29 1 3.0160 1.1747 0.5138 30 1 1.4385 -2.0856 0.4334 31 1 2.9741 -1.1992 0.5889 32 1 1.5165 -1.7894 -2.0272 33 1 3.0523 -0.9030 -1.8717 34 1 3.3393 -3.4089 -0.6015 35 1 2.8043 -1.9196 -3.8450 36 1 3.5823 -2.8937 -5.9671 37 1 4.8131 -5.0229 -5.9725 38 1 5.2743 -6.1905 -3.8559 39 1 4.7957 -8.8627 -2.7574 40 1 3.5931 -8.2781 -1.5825 41 1 3.8271 -7.4143 -3.1212 42 1 7.1347 -10.4208 -1.9753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288659810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:21 Heat of formation + Delta-G solvation = 25.417296 kcal Electronic energy + Delta-G solvation = -20187.808553 eV Core-core repulsion = 17258.507640 eV Total energy + Delta-G solvation = -2929.300913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.99132 -37.14577 -34.89202 -34.04937 -31.00650 -30.57619 -29.77699 -27.68111 -27.26170 -25.32028 -23.76083 -22.20372 -21.40412 -20.80493 -18.74476 -17.50267 -16.26038 -16.10379 -15.78519 -15.48710 -14.97723 -14.74376 -14.11390 -13.86252 -13.77395 -13.54081 -13.34828 -13.25616 -12.71988 -12.51296 -12.02605 -11.94037 -11.84951 -11.62807 -11.41123 -11.29414 -11.06360 -10.98361 -10.87943 -10.55428 -10.38336 -9.93219 -9.78791 -9.38423 -9.29896 -8.98486 -8.85127 -8.47615 -7.42742 -6.27606 -6.19127 -4.27692 1.79247 1.94666 2.02980 2.63109 3.25278 3.29093 3.32968 3.58897 3.83963 4.26713 4.31894 4.62082 4.69755 4.93763 5.08105 5.13125 5.26936 5.29672 5.39046 5.43357 5.45373 5.65010 5.68783 5.70535 5.80939 5.85416 5.93390 6.12352 6.35114 6.37732 6.58060 6.60947 6.63736 6.78028 6.79909 6.83790 7.03291 7.23035 7.38225 7.63237 7.64986 7.79816 8.00042 8.03713 8.70774 9.36018 10.87220 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.003743 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.821734 B = 7478.385049 C = 8742.899026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 C -0.121 4.121 4 C -0.099 4.099 5 C 0.137 3.863 6 N -0.747 5.747 7 C 0.222 3.778 8 C -0.190 4.190 9 C -0.094 4.094 10 C -0.161 4.161 11 C -0.088 4.088 12 C -0.132 4.132 13 S -0.185 6.185 14 C 0.103 3.897 15 H 0.050 0.950 16 C -0.139 4.139 17 C -0.511 4.511 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.887 5.887 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.404 0.596 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.020 0.980 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 16.403 -1.314 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.121 4.121 3 C -0.177 4.177 4 C -0.137 4.137 5 C 0.012 3.988 6 N -0.380 5.380 7 C 0.115 3.885 8 C -0.215 4.215 9 C -0.116 4.116 10 C -0.183 4.183 11 C -0.113 4.113 12 C -0.249 4.249 13 S 0.061 5.939 14 C -0.025 4.025 15 H 0.068 0.932 16 C -0.198 4.198 17 C -0.551 4.551 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.524 5.524 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.179 16.703 -0.196 19.060 hybrid contribution 0.645 -1.098 -0.321 1.313 sum -8.534 15.605 -0.518 17.794 Atomic orbital electron populations 1.23732 0.95213 1.01968 1.02207 1.21599 0.95317 0.95334 0.99847 1.20887 1.00235 0.94383 1.02244 1.20875 1.00831 0.95040 0.96932 1.21156 0.95649 0.85925 0.96062 1.44727 1.62697 1.24170 1.06364 1.17301 0.93502 0.91321 0.86418 1.20410 1.08133 1.01725 0.91195 1.20749 0.98288 0.95799 0.96785 1.20794 1.03277 0.96757 0.97431 1.21240 0.98853 1.00011 0.91197 1.21429 1.06251 0.98478 0.98725 1.84867 1.77082 1.23308 1.08693 1.21022 0.95275 0.86884 0.99290 0.93228 1.22084 0.97760 1.01493 0.98481 1.20609 1.37236 1.04349 0.92898 0.91623 1.24883 0.95431 0.96620 0.96381 1.69869 1.42737 1.18574 1.21239 0.86426 0.79410 0.78732 0.82171 1.19980 1.21043 1.19951 0.88352 0.88440 0.91343 0.91888 0.91693 0.90536 0.90446 0.92591 0.92555 0.75948 0.86669 0.86825 0.86737 0.84974 0.89238 0.94100 0.96150 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 13.89 29.02 0.40 -1.20 16 2 C -0.12 -1.05 5.31 -101.07 -0.54 -1.59 16 3 C -0.12 -0.89 10.03 36.00 0.36 -0.53 16 4 C -0.10 -0.98 5.49 -27.88 -0.15 -1.13 16 5 C 0.14 1.57 4.90 -4.04 -0.02 1.55 16 6 N -0.75 -11.18 5.68 -58.45 -0.33 -11.51 16 7 C 0.22 3.84 6.66 -83.49 -0.56 3.28 16 8 C -0.19 -2.90 9.31 -39.41 -0.37 -3.26 16 9 C -0.09 -1.40 10.04 -39.55 -0.40 -1.79 16 10 C -0.16 -2.64 10.04 -39.57 -0.40 -3.04 16 11 C -0.09 -1.70 8.06 -39.40 -0.32 -2.02 16 12 C -0.13 -2.62 5.99 -38.92 -0.23 -2.85 16 13 S -0.19 -4.05 19.75 -107.50 -2.12 -6.17 16 14 C 0.10 2.57 1.97 -27.88 -0.06 2.51 16 15 H 0.05 1.33 6.83 -51.92 -0.35 0.97 16 16 C -0.14 -3.33 8.38 37.16 0.31 -3.02 16 17 C -0.51 -13.88 8.58 -34.44 -0.30 -14.18 16 18 H 0.07 1.79 7.71 -52.49 -0.40 1.38 16 19 C 0.07 1.91 5.30 -17.82 -0.09 1.81 16 20 N -0.89 -24.40 11.39 55.43 0.63 -23.77 16 21 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 25 H 0.10 0.81 7.99 -52.49 -0.42 0.39 16 26 H 0.10 0.68 8.04 -52.48 -0.42 0.26 16 27 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 29 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.08 0.77 7.99 -51.93 -0.41 0.35 16 31 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.06 0.64 7.95 -51.93 -0.41 0.22 16 33 H 0.06 0.62 7.96 -51.93 -0.41 0.21 16 34 H 0.40 6.30 7.02 -40.82 -0.29 6.02 16 35 H 0.12 1.48 6.74 -52.48 -0.35 1.13 16 36 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.13 2.75 4.99 -52.48 -0.26 2.49 16 39 H 0.09 2.30 6.27 -51.93 -0.33 1.98 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.44 6.16 -51.93 -0.32 0.12 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -27.94 352.21 -10.36 -38.30 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.47 Total: 7.46 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -2.35 Total: -25.45 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.30 Total: -35.28 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -2.12 Total: -6.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.94 -10.36 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288659810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.718 kcal (2) G-P(sol) polarization free energy of solvation -27.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds