Wall clock time and date at job start Tue Mar 31 2020 06:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50694 * 120.00461 * 2 1 4 4 C 1.50703 * 119.99677 * 180.02562 * 2 1 3 5 5 C 1.52996 * 109.47472 * 94.99980 * 4 2 1 6 6 N 1.46499 * 109.47207 * 179.97438 * 5 4 2 7 7 C 1.40009 * 120.00183 * 179.97438 * 6 5 4 8 8 C 1.38645 * 120.09567 * 359.97438 * 7 6 5 9 9 C 1.38283 * 120.00346 * 179.97438 * 8 7 6 10 10 C 1.38270 * 120.20436 * 0.05011 * 9 8 7 11 11 C 1.38242 * 120.19694 * 359.97438 * 10 9 8 12 12 C 1.38729 * 119.99416 * 359.67540 * 11 10 9 13 13 S 1.76196 * 120.10405 * 180.32425 * 12 11 10 14 14 C 1.81398 * 103.00079 * 354.36010 * 13 12 11 15 15 H 1.09002 * 109.47130 * 49.52110 * 14 13 12 16 16 C 1.53005 * 109.46894 * 289.52331 * 14 13 12 17 17 C 1.50703 * 109.47326 * 169.52547 * 14 13 12 18 18 H 1.07995 * 119.99674 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99944 * 180.02562 * 17 14 13 20 20 N 1.31513 * 120.00079 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99752 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47467 * 59.99985 * 21 19 17 23 23 H 1.48501 * 109.46996 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47091 * 299.99367 * 21 19 17 25 25 H 1.07995 * 120.00573 * 180.02562 * 1 2 3 26 26 H 1.08010 * 119.99883 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.47141 * 270.00079 * 3 2 1 28 28 H 1.08998 * 109.47132 * 29.99601 * 3 2 1 29 29 H 1.09003 * 109.47717 * 150.00109 * 3 2 1 30 30 H 1.08994 * 109.47179 * 334.99632 * 4 2 1 31 31 H 1.09003 * 109.47073 * 214.99776 * 4 2 1 32 32 H 1.09003 * 109.46806 * 299.99960 * 5 4 2 33 33 H 1.09001 * 109.47200 * 60.00068 * 5 4 2 34 34 H 0.96998 * 120.00317 * 0.02562 * 6 5 4 35 35 H 1.08005 * 119.99607 * 359.97438 * 8 7 6 36 36 H 1.08003 * 119.89969 * 180.02562 * 9 8 7 37 37 H 1.07998 * 119.89938 * 179.97438 * 10 9 8 38 38 H 1.08003 * 120.00384 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.46549 * 173.72783 * 16 14 13 40 40 H 1.08993 * 109.46981 * 293.72952 * 16 14 13 41 41 H 1.08997 * 109.47050 * 53.73506 * 16 14 13 42 42 H 0.96997 * 120.00186 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 7 3.1602 -2.9519 -1.4381 7 6 3.6014 -3.5051 -2.6463 8 6 3.3453 -2.8544 -3.8435 9 6 3.7824 -3.4022 -5.0355 10 6 4.4744 -4.5993 -5.0386 11 6 4.7339 -5.2555 -3.8498 12 6 4.3056 -4.7096 -2.6485 13 16 4.6422 -5.5392 -1.1310 14 6 5.3930 -7.0980 -1.6759 15 1 6.1835 -6.8882 -2.3964 16 6 4.3254 -7.9764 -2.3314 17 6 5.9751 -7.8179 -0.4867 18 1 5.9012 -7.3811 0.4982 19 6 6.6029 -9.0337 -0.6564 20 7 6.6933 -9.5653 -1.8559 21 14 7.3238 -9.9263 0.8176 22 1 6.2463 -10.2128 1.7985 23 1 7.9385 -11.2024 0.3715 24 1 8.3594 -9.0737 1.4547 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 2.2452 1.6197 -1.0277 28 1 1.4745 2.0647 0.5138 29 1 3.0160 1.1747 0.5138 30 1 1.4385 -2.0856 0.4334 31 1 2.9741 -1.1992 0.5889 32 1 1.5165 -1.7894 -2.0272 33 1 3.0523 -0.9030 -1.8717 34 1 3.3393 -3.4089 -0.6015 35 1 2.8043 -1.9196 -3.8450 36 1 3.5823 -2.8937 -5.9671 37 1 4.8131 -5.0229 -5.9725 38 1 5.2743 -6.1905 -3.8559 39 1 4.7957 -8.8627 -2.7574 40 1 3.5931 -8.2781 -1.5825 41 1 3.8271 -7.4143 -3.1212 42 1 7.1347 -10.4208 -1.9753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288659810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:20 Heat of formation + Delta-G solvation = 12.722189 kcal Electronic energy + Delta-G solvation = -20188.359054 eV Core-core repulsion = 17258.507640 eV Total energy + Delta-G solvation = -2929.851414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24980 -38.01002 -36.26485 -35.70942 -32.75706 -31.76620 -31.22701 -28.60756 -28.01295 -27.38125 -24.81653 -23.62758 -23.12664 -22.12831 -19.59044 -18.91139 -18.00292 -17.44475 -17.23748 -16.60943 -16.31659 -15.86784 -15.41129 -15.23919 -14.97275 -14.71959 -14.60950 -14.35875 -14.04830 -13.83186 -13.70134 -13.17708 -12.95457 -12.88316 -12.83223 -12.56273 -12.49280 -12.39088 -12.27275 -12.14201 -11.87334 -11.57500 -11.34527 -10.96054 -10.78214 -10.51420 -10.36917 -9.94622 -8.78065 -8.24842 -7.81967 -6.41302 0.44709 0.71737 0.99428 1.29641 1.41047 1.42487 1.51163 1.95829 2.37442 2.57646 2.94853 3.04846 3.93156 3.96187 4.01333 4.07619 4.26204 4.34231 4.51015 4.57145 4.59447 4.62507 4.70040 4.76617 4.82432 4.84788 4.86472 4.97534 5.02248 5.06331 5.09645 5.16918 5.29767 5.33011 5.50667 5.57039 5.71335 5.73251 5.74537 5.96194 5.98491 6.00724 6.45405 6.60890 6.73274 7.25920 8.81271 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.003743 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.821734 B = 7478.385049 C = 8742.899026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.120 4.120 4 C -0.095 4.095 5 C 0.137 3.863 6 N -0.749 5.749 7 C 0.219 3.781 8 C -0.187 4.187 9 C -0.077 4.077 10 C -0.169 4.169 11 C -0.107 4.107 12 C -0.165 4.165 13 S -0.191 6.191 14 C 0.102 3.898 15 H 0.021 0.979 16 C -0.120 4.120 17 C -0.536 4.536 18 H 0.058 0.942 19 C 0.027 3.973 20 N -0.910 5.910 21 Si 0.968 3.032 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.270 1.270 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 18.573 -1.822 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.131 4.131 3 C -0.177 4.177 4 C -0.132 4.132 5 C 0.014 3.986 6 N -0.379 5.379 7 C 0.110 3.890 8 C -0.212 4.212 9 C -0.098 4.098 10 C -0.190 4.190 11 C -0.131 4.131 12 C -0.281 4.281 13 S 0.053 5.947 14 C -0.026 4.026 15 H 0.039 0.961 16 C -0.180 4.180 17 C -0.575 4.575 18 H 0.076 0.924 19 C -0.175 4.175 20 N -0.548 5.548 21 Si 0.792 3.208 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.195 1.195 25 H 0.114 0.886 26 H 0.130 0.870 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.309 18.906 -0.717 21.546 hybrid contribution 0.915 -1.629 -0.257 1.886 sum -9.395 17.276 -0.974 19.690 Atomic orbital electron populations 1.23880 0.95142 1.02592 1.01226 1.21629 0.95525 0.95187 1.00714 1.20904 1.00136 0.93892 1.02754 1.20814 1.00808 0.95713 0.95887 1.21329 0.95550 0.84441 0.97295 1.44939 1.62465 1.25075 1.05444 1.17531 0.92868 0.90527 0.88073 1.20817 1.07529 1.02474 0.90345 1.21229 0.95677 0.94549 0.98359 1.21056 1.03513 0.97473 0.96974 1.21164 0.99676 0.99707 0.92580 1.21419 1.09292 1.00086 0.97342 1.84562 1.77399 1.21880 1.10812 1.20739 0.94879 0.88866 0.98091 0.96123 1.21865 0.97146 1.00662 0.98338 1.20893 1.38166 1.05207 0.93223 0.92358 1.25699 0.95542 0.97209 0.99071 1.69983 1.43032 1.18856 1.22934 0.85449 0.78726 0.77669 0.78909 1.19417 1.20188 1.19503 0.88621 0.87003 0.90753 0.90874 0.91909 0.91118 0.90743 0.91922 0.91556 0.76716 0.83543 0.82648 0.84724 0.87722 0.91269 0.94840 0.94829 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 13.89 67.79 0.94 -1.79 16 2 C -0.13 -2.00 5.31 -16.48 -0.09 -2.09 16 3 C -0.12 -1.50 10.03 71.23 0.71 -0.78 16 4 C -0.09 -1.73 5.49 29.85 0.16 -1.57 16 5 C 0.14 2.85 4.90 86.38 0.42 3.27 16 6 N -0.75 -21.59 5.68 -338.83 -1.93 -23.52 16 7 C 0.22 7.28 6.66 38.24 0.25 7.54 16 8 C -0.19 -5.09 9.31 22.38 0.21 -4.88 16 9 C -0.08 -1.99 10.04 22.29 0.22 -1.77 16 10 C -0.17 -5.26 10.04 22.28 0.22 -5.04 16 11 C -0.11 -4.21 8.06 22.39 0.18 -4.03 16 12 C -0.16 -6.61 5.99 22.70 0.14 -6.48 16 13 S -0.19 -8.65 19.75 -56.49 -1.12 -9.76 16 14 C 0.10 5.37 1.97 29.85 0.06 5.43 16 15 H 0.02 1.19 6.83 -2.39 -0.02 1.17 16 16 C -0.12 -6.06 8.38 71.98 0.60 -5.46 16 17 C -0.54 -30.15 8.58 25.60 0.22 -29.93 16 18 H 0.06 3.28 7.71 -2.91 -0.02 3.26 16 19 C 0.03 1.46 5.30 84.65 0.45 1.91 16 20 N -0.91 -51.54 11.39 21.45 0.24 -51.29 16 21 Si 0.97 43.27 29.54 68.60 2.03 45.29 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H 0.10 1.40 7.99 -2.91 -0.02 1.37 16 26 H 0.11 1.26 8.04 -2.91 -0.02 1.24 16 27 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.07 0.76 8.06 -2.39 -0.02 0.74 16 29 H 0.06 0.80 8.09 -2.39 -0.02 0.78 16 30 H 0.07 1.36 7.99 -2.39 -0.02 1.34 16 31 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 32 H 0.06 1.24 7.95 -2.39 -0.02 1.22 16 33 H 0.07 1.27 7.96 -2.39 -0.02 1.25 16 34 H 0.40 12.39 7.02 -92.71 -0.65 11.73 16 35 H 0.15 3.06 6.74 -2.91 -0.02 3.04 16 36 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 38 H 0.10 4.64 4.99 -2.91 -0.01 4.62 16 39 H 0.07 3.73 6.27 -2.39 -0.01 3.72 16 40 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.03 1.54 6.16 -2.39 -0.01 1.53 16 42 H 0.27 14.35 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -61.84 352.21 4.29 -57.55 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.35 Total: 27.39 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 4.71 Total: -45.66 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -1.68 Total: -74.81 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.12 Total: -9.76 kcal Total: -61.84 4.29 -57.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288659810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.270 kcal (2) G-P(sol) polarization free energy of solvation -61.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds